New Fisheries-related data from the Mediterranean Sea (November, 2016)

In this fourth Collective Article, with fisheries-related data from the Mediterranean, we present weight-length relationships for eight deep-sea fish species (Brama brama, Conger conger, Etmopterus spinax, Molva macrophthalma, Mora moro, Pagellus bogaraveo, Phycis blennoides) from the Eastern Ionian Sea; Scyliorhinus canicula from various locations in the Mediterranean Sea and weight-length relationships and condition factor of five Mugilidae species (Liza aurata, Liza saliens, Liza ramada, Mugil cephalus, Chelon labrosus) from a Mediterranean lagoon in the Ionian Sea. Moreover, we present otolith weight, fish length and otolith length relationships of the red mullet (Mullus barbatus) in the Aegean and Ionian Sea and otolith weight relationships in European hake (Merluccius merluccius) from the Greek Seas

DeepOtolith v1.0: An Open-Source AI Platform for Automating Fish Age Reading from Otolith or Scale Images

Every year, marine scientists around the world read thousands of otolith or scale images to determine the age structure of commercial fish stocks. This knowledge is important for fisheries and conservation management. However, the age-reading procedure is time-consuming and costly to perform due to the specialized expertise and labor needed to identify annual growth zones in otoliths. Effective automated systems are needed to increase throughput and reduce cost. DeepOtolith is an open-source artificial intelligence (AI) platform that addresses this issue by providing a web system with a simple interface that automatically estimates fish age by combining otolith images with convolutional neural networks (CNNs), a class of deep neural networks that has been a dominant method in computer vision tasks. Users can upload otolith image data for selective fish species, and the platform returns age estimates. The estimates of multiple images can be exported to conduct conclusions or further age-related research. DeepOtolith currently contains classifiers/regressors for three fish species; however, more species will be included as related work on ageing will be tested and published soon. Herein, the architecture and functionality of the platform are presented. Current limitations and future directions are also discussed. Overall, DeepOtolith should be considered as the first step towards building a community of marine ecologists, machine learning experts, and stakeholders that will collaborate to support the conservation of fishery resources.publishedVersio

Understanding How Microplastics Affect Marine Biota on the Cellular Level Is Important for Assessing Ecosystem Function: A Review

Plastic has become indispensable for human life. When plastic debris is discarded into waterways, these items can interact with organisms. Of particular concern are microscopic plastic particles (microplastics) which are subject to ingestion by several taxa. This review summarizes the results of cutting-edge research about the interactions between a range of aquatic species and microplastics, including effects on biota physiology and secondary ingestion. Uptake pathways via digestive or ventilatory systems are discussed, including (1) the physical penetration of microplastic particles into cellular structures, (2) leaching of chemical additives or adsorbed persistent organic pollutants (POPs), and (3) consequences of bacterial or viral microbiota contamination associated with microplastic ingestion. Following uptake, a number of individual-level effects have been observed, including reduction of feeding activities, reduced growth and reproduction through cellular modifications, and oxidative stress. Microplastic-associated effects on marine biota have become increasingly investigated with growing concerns regarding human health through trophic transfer. We argue that research on the cellular interactions with microplastics provide an understanding of their impact to the organisms’ fitness and, therefore, its ability to sustain their functional role in the ecosystem. The review summarizes information from 236 scientific publications. Of those, only 4.6% extrapolate their research of microplastic intake on individual species to the impact on ecosystem functioning. We emphasize the need for risk evaluation from organismal effects to an ecosystem level to effectively evaluate the effect of microplastic pollution on marine environments. Further studies are encouraged to investigate sublethal effects in the context of environmentally relevant microplastic pollution conditions

EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Westerlund 1 and 2 Open Clusters Survey

Context. With a mass exceeding several 104 M and a rich and dense population of massive stars, supermassive young star clusters represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions among stars.Aims. In this paper we present the "Extended Westerlund 1 and 2 Open Clusters Survey" (EWOCS) project, which aims to investigate the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars. The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun.Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically, the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec. Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation were carried out using the ACIS-Extract software.Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a photon flux threshold of approximately 2 × 10−8 photons cm−2 s−1. The X-ray sources exhibit a highly concentrated spatial distribution, with 1075 sources located within the central 1 arcminute. We have successfully detected X-ray emissions from 126 out of the 166 known massive stars of the cluster, and we have collected over 71000 photons from the magnetar CXO J164710.20-455217

EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Westerlund 1 and 2 Open Clusters Survey

Context. With a mass exceeding several 104M⊙ and a rich and dense population of massive stars, supermassive young star clusters represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions among stars. Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars. The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun. Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically, the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec. Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation were carried out using the ACIS-Extract software. Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a photon flux threshold of approximately 2 × 10−8 photons cm−2s−1. The X-ray sources exhibit a highly concentrated spatial distribution, with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217