Seabird diet analysis suggests sudden shift in the pelagic communities of the subtropical Northeast Atlantic

The dynamics of the subtropical pelagic ecosystems of the Northeast Atlantic are still poorly known due to the high costs associated with sampling large oceanic areas. Top predators can be used as alternative low-cost samplers and indicators of the temporal variability of such systems. To study the variation in the composition of pelagic species through time in the broad Canary current region, we analysed foraging trips and regurgitations of Cory's shearwaters Calonectris borealis nesting on Selvagens islands, in 2008-2011 and 2016-2018. Fisheries data, oceanographic variables and the North Atlantic Oscillation were explored as possible explanatory variables for trends in behaviour and diet. Cory's shearwaters' diet, complemented by fisheries data, revealed marked changes in the composition of the pelagic fish communities. In 2016 there was a peak in the abundance of the Atlantic chub mackerel Scomber colias, followed by an explosive increase in the abundance of the Longspine snipefish Macroramphosus scolopax in 2017 and 2018, as deduced from the diet composition of the Cory's shearwater, and supported by fisheries data, in the broad oceanic area surrounding the Selvagens islands. Oceanographic variables did not show fluctuations correlated with these marked shifts in pelagic fish availability, the causes of which remain largely unknown. This study highlights the importance of the Atlantic chub mackerel and of the Longspine snipefish in the Madeira/Canary region and exemplifies the efficiency of avian predators in revealing rapid changes in pelagic communities of oceanic domains. Such trends and variations need to be better monitored and understood to measure the impact of ongoing global changes and to sustainably manage the marine environment and resources.Fundação para a Ciência e Tecnologia - FCTinfo:eu-repo/semantics/publishedVersio

Male post‐breeding movements and stopover habitat selection of an endangered short‐distance migrant, the Little Bustard Tetrax tetrax

Migratory decisions, such as the selection of stopover sites, are critical for the success of post‐breeding migratory movements and subsequent survival. Recent advances in bio‐logging have revealed the stopover strategies of many long‐distance migrants, but far less attention has been given to short‐distance migrants. We investigated the stopover ecology of an endangered grassland bird, the Little Bustard Tetrax tetrax, a short‐distance migrant in Iberia. Using high‐resolution spatial GPS/GSM data, 27 male Little Bustards breeding in southern Portugal were tracked between 2009 and 2011. We studied post‐breeding movements using Dynamic Brownian Bridge models to identify the main stopover sites, and generalized linear mixed models to examine habitat selection in stopovers. During their post‐breeding movements, males were essentially nocturnal migrants, making frequent stopovers while maintaining a relatively fast pace to reach more productive agricultural post‐breeding areas. Stopovers occurred in most post‐breeding movements (83%) regardless of the total distance covered (average 64.3 km), and most stopovers (84%) lasted less than 24 h. Birds used mostly agricultural non‐irrigated and irrigated croplands as stopover sites and avoided other land uses and rugged terrain. There was a negative relationship between stopovers and the proximity to roads, but not to power lines. The high frequency of stopovers during post‐breeding movements, despite the short distances travelled, together with the nocturnal migratory behaviour of bustards, may impose additional risks to a bird mainly threatened by collision with power lines in non‐breeding areas. We also conclude that even for short‐distance migrants, habitat connectivity between breeding and post‐breeding areas is likely to be a key conservation concern.info:eu-repo/semantics/publishedVersio

Gradient-based estimation of Manning's friction coefficient from noisy data

We study the numerical recovery of Manning's roughness coefficient for the diffusive wave approximation of the shallow water equation. We describe a conjugate gradient method for the numerical inversion. Numerical results for one-dimensional model are presented to illustrate the feasibility of the approach. Also we provide a proof of the differentiability of the weak form with respect to the coefficient as well as the continuity and boundedness of the linearized operator under reasonable assumptions using the maximal parabolic regularity theory.Comment: 19 pages, 3 figure

Moult strategies of Cory’s Shearwaters Calonectris diomedea borealis: The influence of colony location, sex and individual breeding status

The replacement of old feathers is essential for birds, but it is also an energy-demanding task. As moult usually does not coincide with other stressful events in its annual cycle, such as reproduction and migration, the bird can optimise its use of time and energy allocated to different activities. There are very few studies comparing the moult strategies of populations with similar breeding calendars but occurring in areas of different habitat quality. Cory’s Shearwaters Calonectris diomedea have a partial moult–breeding overlap, an unusual phenomenon among pelagic seabirds. We have compared the moult schedules in Cory’s Shearwater colonies located in distinct environments (pelagic vs. coastal) and show that moult–breeding overlap is less extensive on Selvagem Grande, situated in deep oceanic waters, than on Berlenga, situated on the continental shelf. Colony attendance of failed breeders, most of which were moulting, was lower at Selvagem Grande than at Berlenga, which suggests that the feeding areas of birds from the former site are more distant from the colony. Failed breeders started to moult earlier than individuals still raising a chick, and breeding status had a stronger influence on determining the onset of wing-feather moult than colony location. Despite published evidence that internal circannual rhythms and external cues, such as variation in daylength, are important factors regulating moult schedules, it is clear that birds retain a considerable flexibility that allows them to respond to external factors in order to strategically manage time and energy in a way that is thought to maximise their fitness

Parent-offspring dietary segregation of Cory's shearwaters breeding in contrasting environments

Abstract In pelagic seabirds, who often explore distant food resources, information is usually scarce on the level of trophic segregation between parents and their offspring. To investigate this issue, we used GPS tracking, stable isotopes and dietary information of Cory's shearwaters Calonectris diomedea breeding in contrasting environments. Foraging trips at Selvagem Grande (an oceanic island) mainly targeted the distant African coast, while at Berlenga island (located on the continental shelf), shearwaters foraged mainly over nearby shelf waters. The degree of isotopic segregation between adults and chicks, based on d 13 C, differed markedly between the two sites, indicating that adult birds at Selvagem fed their chicks with a mixture of shelf and offshore pelagic prey but assimilated more prey captured on coastal shelf waters. Isotopic differences between age classes at Berlenga were much smaller and may have resulted from limited dietary segregation or from age-related metabolic differences. The diet of shearwaters was also very different between the two colonies, with offshore pelagic prey only being detected at Selvagem Grande. Our findings suggest that spatial foraging constraints influence resource partitioning between pelagic seabirds and their offspring and can lead to a parent-offspring dietary segregation

An holistic ecological analysis of the diet of Cory's shearwaters using prey morphological characters and DNA barcoding

wledge of the dietary choices and trophic niches of organisms is the key to understanding their roles in ecosystems. In seabird diet studies, prey identification is a difficult challenge, often yielding results with technique-specific biases. Additionally, sampling efforts are often not extensive enough to reveal intrapopulational variation. Immature animals, which may constitute up to 50% of a population, may occupy a significantly different trophic niche to more experienced birds, but this remains largely unexplored. We investigated the diet of Cory's shearwater (Calonectris diomedea) from Selvagem Grande, an island located off the northwest African coast, collecting a total of 698 regurgitate samples over three consecutive breeding seasons. The diet was assessed using two complementary approaches for prey identification: conventional morphological analysis (using fish vertebrae, otoliths and cephalopod beaks) and DNA barcoding of the 16S rRNA mitochondrial gene, in cases where a positive identification could not be retrieved. Species assignments employed BLAST and distance-based methods, as well as direct optimization of the tree length based on unaligned sequences in POY. This method resulted in robust tree estimates and species assignments, showing its potential for DNA barcoding of stomach contents using hypervariable markers such as the 16S. The molecular approach increased taxonomic resolution and revealed an additional 17 taxa. Diet differed significantly according to breeding status, sex, breeding phase (prelaying and chick rearing) and year. Such direct evidence of trophic segregation within the same population has rarely been shown in seabirds and highlights the importance of including such variables in ecosystem-based management approaches

Mapping of QTL for Resistance against the Crucifer Specialist Herbivore Pieris brassicae in a New Arabidopsis Inbred Line Population, Da(1)-12×Ei-2

In Arabidopsis thaliana and other crucifers, the glucosinolate-myrosinase system contributes to resistance against herbivory by generalist insects. As yet, it is unclear how crucifers defend themselves against crucifer-specialist insect herbivores.We analyzed natural variation for resistance against two crucifer specialist lepidopteran herbivores, Pieris brassicae and Plutella xylostella, among Arabidopsis thaliana accessions and in a new Arabidopsis recombinant inbred line (RIL) population generated from the parental accessions Da(1)-12 and Ei-2. This RIL population consists of 201 individual F(8) lines genotyped with 84 PCR-based markers. We identified six QTL for resistance against Pieris herbivory, but found only one weak QTL for Plutella resistance. To elucidate potential factors causing these resistance QTL, we investigated leaf hair (trichome) density, glucosinolates and myrosinase activity, traits known to influence herbivory by generalist insects. We identified several previously unknown QTL for these traits, some of which display a complex pattern of epistatic interactions.Although some trichome, glucosinolate or myrosinase QTL co-localize with Pieris QTL, none of these traits explained the resistance QTL convincingly, indicating that resistance against specialist insect herbivores is influenced by other traits than resistance against generalists

Long-term and large-scale multispecies dataset tracking population changes of common European breeding birds

Around fifteen thousand fieldworkers annually count breeding birds using standardized protocols in 28 European countries. The observations are collected by using country-specific and standardized protocols, validated, summarized and finally used for the production of continent-wide annual and long-term indices of population size changes of 170 species. Here, we present the database and provide a detailed summary of the methodology used for fieldwork and calculation of the relative population size change estimates. We also provide a brief overview of how the data are used in research, conservation and policy. We believe this unique database, based on decades of bird monitoring alongside the comprehensive summary of its methodology, will facilitate and encourage further use of the Pan-European Common Bird Monitoring Scheme results.publishedVersio

A proposed new bacteriophage subfamily: “Jerseyvirinae”

© 2015, Springer-Verlag Wien. Based on morphology and comparative nucleotide and protein sequence analysis, a new subfamily of the family Siphoviridae is proposed, named “Jerseyvirinae” and consisting of three genera, “Jerseylikevirus”, “Sp3unalikevirus” and “K1glikevirus”. To date, this subfamily consists of 18 phages for which the genomes have been sequenced. Salmonella phages Jersey, vB_SenS_AG11, vB_SenS-Ent1, vB_SenS-Ent2, vB_SenS-Ent3, FSL SP-101, SETP3, SETP7, SETP13, SE2, SS3e and wksl3 form the proposed genus “Jerseylikevirus”. The proposed genus “K1glikevirus” consists of Escherichia phages K1G, K1H, K1ind1, K1ind2 and K1ind3. The proposed genus “Sp3unalikevirus” contains one member so far. Jersey-like phages appear to be widely distributed, as the above phages were isolated in the UK, Canada, the USA and South Korea between 1970 and the present day. The distinguishing features of this subfamily include a distinct siphovirus morphotype, genomes of 40.7-43.6kb (49.6-51.4mol% G+C), a syntenic genome organisation, and a high degree of nucleotide sequence identity and shared proteins. All known members of the proposed subfamily are strictly lytic

Fifth European Dirofilaria and Angiostrongylus Days (FiEDAD) 2016

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