Context-Dependent Dual Role of SKI8 Homologs in mRNA Synthesis and Turnover

Eukaryotic mRNA transcription and turnover is controlled by an enzymatic machinery that includes RNA polymerase II and the 3′ to 5′ exosome. The activity of these protein complexes is modulated by additional factors, such as the nuclear RNA polymerase II-associated factor 1 (Paf1c) and the cytoplasmic Superkiller (SKI) complex, respectively. Their components are conserved across uni- as well as multi-cellular organisms, including yeast, Arabidopsis, and humans. Among them, SKI8 displays multiple facets on top of its cytoplasmic role in the SKI complex. For instance, nuclear yeast ScSKI8 has an additional function in meiotic recombination, whereas nuclear human hSKI8 (unlike ScSKI8) associates with Paf1c. The Arabidopsis SKI8 homolog VERNALIZATION INDEPENDENT 3 (VIP3) has been found in Paf1c as well; however, whether it also has a role in the SKI complex remains obscure so far. We found that transgenic VIP3-GFP, which complements a novel vip3 mutant allele, localizes to both nucleus and cytoplasm. Consistently, biochemical analyses suggest that VIP3–GFP associates with the SKI complex. A role of VIP3 in the turnover of nuclear encoded mRNAs is supported by random-primed RNA sequencing of wild-type and vip3 seedlings, which indicates mRNA stabilization in vip3. Another SKI subunit homolog mutant, ski2, displays a dwarf phenotype similar to vip3. However, unlike vip3, it displays neither early flowering nor flower development phenotypes, suggesting that the latter reflect VIP3's role in Paf1c. Surprisingly then, transgenic ScSKI8 rescued all aspects of the vip3 phenotype, suggesting that the dual role of SKI8 depends on species-specific cellular context

High spatial resolution mid-infrared spectroscopy of the starburst galaxies NGC 3256, IIZw40 and Henize 2-10

In order to show the importance of high spatial resolution observations of extra-galactic sources when compared to observations obtained with larger apertures such as ISO, we present N-band spectra (8-13 um) of some locations in three starburst galaxies. In particular, the two galactic nuclei of the spiral galaxy NGC3256, the compact IR supernebula in the dwarf galaxy IIZw40 and the two brightest IR knots in the central starburst of the WR galaxy He2-10. The spectra have been obtained with TIMMI2 on the ESO 3.6m telescope. An inventory of the spectra in terms of atomic fine-structure lines and molecular bands is presented. We show the great value of these high spatial resolution data at constraining properties such as the extinction in the mid-IR, metallicity or stellar content (age, IMF, etc.). Regarding this, we have constrained the stellar content of the IR compact knot in IIZw40 by using the mid-IR fine-structure lines and setting restrictions on the nebular geometry. Considering the PAH bands, we have constructed a new mid-/far-IR diagnostic diagram based on the 11.2 um PAH and continuum, accessible to ground-based observations. Finally, we find a dependence between the presence or non-presence of PAHs and the hardness of the radiation field as measured by the [SIV]/[NeII] ratio. In particular, sources with PAH emission have in general a [SIV]/[NeII] ratio < 0.35. We investigate possible origins for this relation and conclude that it does not necessarily imply PAH destruction, but could also be explained by the PAH-dust competition for FUV photons.Comment: 22 pages, 10 figures, accepted for publication in A&

Remineralization of particulate organic carbon in an ocean oxygen minimum zone

This work was funded by a NERC standard grant NE/E01559X/1

Electro-optical and temperature tunable WDM filter

We present a new concept of a tuneable WDM filter. With this device we demonstrate that tuning over the complete C or L band is feasible by using either Temperature or the Electro-Optic effect. We have simulated and designed a device in the InP-based material system with capacity for two channels spaced 15 nm. Design, simulation, and the preliminary experimental results are presented in this paper

QoS-based resource management for ambient intelligence

Future homes will probably be equipped with in-home networks, combining a backbone of wired networks and a large number of devices connected through wireless links, to provide a responsive and supportive environment, known as Ambient Intelligence. Many of the applications provided to the user lean heavily on media processing and streaming data. Therefore it is expected that consumer terminals will play an important role in providing new experiences to the users. Most of the devices have to be very cost and power effective, while digital media processing is able to consume all the resources a device can offer, and more. Typically, the number of applications and the resource needs of the applications change over time. To adapt to these variations, applications have the ability to trade resource usage for quality of service (QoS). QoS based resource management enables these tradeoffs in resource-constrained systems. In this paper we present our QoS approach, and we explore an integrated approach that addresses terminal and network resources, and takes power issues into account

The relative contribution of fast and slow sinking particles to ocean carbon export

Particulate organic carbon (POC) generated by primary production and exported to depth, is an important pathway for carbon transfer to the abyss, where it is stored over climatically significant timescales. These processes constitute the biological carbon pump. A spectrum of particulate sinking velocities exists throughout the water column, however numerical models often simplify this spectrum into suspended, fast and slow sinking particles. Observational studies suggest the spectrum of sinking speeds in the ocean is strongly bimodal with &gt;85% POC flux contained within two pools with sinking speeds of &lt;10 m day?1 and &gt;350 m day?1. We deployed a Marine Snow Catcher (MSC) to estimate the magnitudes of the suspended, fast and slow sinking pools and their fluxes at the Porcupine Abyssal Plain site (48°N, 16.5°W) in summer 2009. The POC concentrations and fluxes determined were 0.2 ?g C L?1 and 54 mg C m?2 day?1 for fast sinking particles, 5 ?g C L?1 and 92 mg C m?2 day?1 for slow sinking particles and 97 ?g C L?1 for suspended particles. Our flux estimates were comparable with radiochemical tracer methods and neutrally buoyant sediment traps. Our observations imply: (1) biomineralising protists, on occasion, act as nucleation points for aggregate formation and accelerate particle sinking; (2) fast sinking particles alone were sufficient to explain the abyssal POC flux; and (3) there is no evidence for ballasting of the slow sinking flux and the slow sinking particles were probably entirely remineralised in the twilight zone

Confirmation of the topology of the Wendelstein 7-X magnetic field to better than 1:100,000

\u3cp\u3eFusion energy research has in the past 40 years focused primarily on the tokamak concept, but recent advances in plasma theory and computational power have led to renewed interest in stellarators. The largest and most sophisticated stellarator in the world, Wendelstein 7-X (W7-X), has just started operation, with the aim to show that the earlier weaknesses of this concept have been addressed successfully, and that the intrinsic advantages of the concept persist, also at plasma parameters approaching those of a future fusion power plant. Here we show the first physics results, obtained before plasma operation: that the carefully tailored topology of nested magnetic surfaces needed for good confinement is realized, and that the measured deviations are smaller than one part in 100,000. This is a significant step forward in stellarator research, since it shows that the complicated and delicate magnetic topology can be created and verified with the required accuracy.\u3c/p\u3