Development of a 16S Reference Library for eDNA Metabarcoding the Freshwater Fishes of Western Ecuador.

This project examines the use of the 16S locus to amplify neotropical freshwater fishes native to Western Ecuador in a newly created 16S reference library for DNA barcoding and eDNA metabarcoding applications. Among the orders Characiformes, Siluriformes, Cichliformes, Gobiiformes, Cryprinodontiformes, Gymnotiformes, and Perciformes, a compendium of 105 specimens were sequenced, with 43 representing new 16S sequences previously unavailable on Genbank

Frequency of Ectodysplasin alleles and limited introgression between sympatric threespine stickleback populations. Environ

Abstract The threespine stickleback (Gasterosteus aculeatus) is primitively an anadromous or resident marine species but has repeatedly colonized fresh water, where predictable phenotypic divergence usually occurs rapidly. A conspicuous element of this divergence is change of the number and position of lateral armor plates from about 33 that cover the entire flank (complete) to <10 anterior plates (low). This difference is caused primarily by variation at the Ectodysplasin (Eda) locus. The low Eda allele appears to be rarer in two geographically adjacent anadromous populations from Cook Inlet, Alaska than in most marine or anadromous populations reported from elsewhere, and there is no evidence of elevated gene flow for Eda between anadromous and resident lake threespine stickleback populations that breed in sympatry. However, the two anadromous populations are divergent for the frequencies of two complete Eda alleles. It is not clear how monomorphic low-plated freshwater populations in Cook Inlet have almost invariably acquired ancestral low Eda alleles from anadromous ancestors in which this allele appears to be extremely rare

Evolutionary diversification of body form and the axial skeleton in the Gasterosteoidei: the sticklebacks and their closest relatives

ABSTRACT Background: Many fishes have evolved long bodies. Decades of research have uncovered substantial variability in body form within the threespine stickleback (Gasterosteus aculeatus) and among its relatives in the Gasterosteoidei, including the evolution of extremely long bodies. Elongation is likely to be associated with the evolution of the axial skeleton but we need studies linking variation in length and the axial skeleton. Objectives: Examine the relationship between body form and vertebral variation in the Gasterosteoidei (the sticklebacks and their closest relatives). Methods: We examined samples of all genera of the Gasterosteidae, Aulorhynchidae, and Hypoptychidae, collected throughout their ranges. We examined body form variation using geometric morphometric methods and the fineness ratio. We obtained total vertebral number and the proportion of precaudal to caudal vertebrae from X-rays of the same specimens. Results: Mean total vertebral number varied from 26.8 in Gasterosteus wheatlandi to 54.5 in Hypoptychus dybowskii. Body shape was significantly related to total vertebral number across taxa, with longer bodied species having more vertebrae. Hypoptychus dybowskii, which has more vertebrae than predicted from its relative body length, is an outlier. The number of precaudal and caudal vertebrae covary linearly across taxa. Again, Hypoptychus dybowskii was an exception, having an excess of precaudal vertebrae for the number of caudal vertebrae that it possesses. Apeltes quadracus was a second exception, having an excess of caudal vertebrae for the number of precaudal vertebrae that it possesses. In summary, changes in the relative proportions of the body are typically accompanied by corresponding changes in vertebral number. Differences in the number of caudal vertebrae appear to be particularly important among some of the morphologically more similar genera like Gasterosteus, Culaea, and Pungitius. Consistent with the hypothesis of pleomerism, vertebral number was also associated with body size, such that larger species have more vertebrae

Global overview of the management of acute cholecystitis during the COVID-19 pandemic (CHOLECOVID study)

Background: This study provides a global overview of the management of patients with acute cholecystitis during the initial phase of the COVID-19 pandemic. Methods: CHOLECOVID is an international, multicentre, observational comparative study of patients admitted to hospital with acute cholecystitis during the COVID-19 pandemic. Data on management were collected for a 2-month study interval coincident with the WHO declaration of the SARS-CoV-2 pandemic and compared with an equivalent pre-pandemic time interval. Mediation analysis examined the influence of SARS-COV-2 infection on 30-day mortality. Results: This study collected data on 9783 patients with acute cholecystitis admitted to 247 hospitals across the world. The pandemic was associated with reduced availability of surgical workforce and operating facilities globally, a significant shift to worse severity of disease, and increased use of conservative management. There was a reduction (both absolute and proportionate) in the number of patients undergoing cholecystectomy from 3095 patients (56.2 per cent) pre-pandemic to 1998 patients (46.2 per cent) during the pandemic but there was no difference in 30-day all-cause mortality after cholecystectomy comparing the pre-pandemic interval with the pandemic (13 patients (0.4 per cent) pre-pandemic to 13 patients (0.6 per cent) pandemic; P = 0.355). In mediation analysis, an admission with acute cholecystitis during the pandemic was associated with a non-significant increased risk of death (OR 1.29, 95 per cent c.i. 0.93 to 1.79, P = 0.121). Conclusion: CHOLECOVID provides a unique overview of the treatment of patients with cholecystitis across the globe during the first months of the SARS-CoV-2 pandemic. The study highlights the need for system resilience in retention of elective surgical activity. Cholecystectomy was associated with a low risk of mortality and deferral of treatment results in an increase in avoidable morbidity that represents the non-COVID cost of this pandemic

Effects of hospital facilities on patient outcomes after cancer surgery: an international, prospective, observational study

Background Early death after cancer surgery is higher in low-income and middle-income countries (LMICs) compared with in high-income countries, yet the impact of facility characteristics on early postoperative outcomes is unknown. The aim of this study was to examine the association between hospital infrastructure, resource availability, and processes on early outcomes after cancer surgery worldwide.Methods A multimethods analysis was performed as part of the GlobalSurg 3 study-a multicentre, international, prospective cohort study of patients who had surgery for breast, colorectal, or gastric cancer. The primary outcomes were 30-day mortality and 30-day major complication rates. Potentially beneficial hospital facilities were identified by variable selection to select those associated with 30-day mortality. Adjusted outcomes were determined using generalised estimating equations to account for patient characteristics and country-income group, with population stratification by hospital.Findings Between April 1, 2018, and April 23, 2019, facility-level data were collected for 9685 patients across 238 hospitals in 66 countries (91 hospitals in 20 high-income countries; 57 hospitals in 19 upper-middle-income countries; and 90 hospitals in 27 low-income to lower-middle-income countries). The availability of five hospital facilities was inversely associated with mortality: ultrasound, CT scanner, critical care unit, opioid analgesia, and oncologist. After adjustment for case-mix and country income group, hospitals with three or fewer of these facilities (62 hospitals, 1294 patients) had higher mortality compared with those with four or five (adjusted odds ratio [OR] 3.85 [95% CI 2.58-5.75]; p<0.0001), with excess mortality predominantly explained by a limited capacity to rescue following the development of major complications (63.0% vs 82.7%; OR 0.35 [0.23-0.53]; p<0.0001). Across LMICs, improvements in hospital facilities would prevent one to three deaths for every 100 patients undergoing surgery for cancer.Interpretation Hospitals with higher levels of infrastructure and resources have better outcomes after cancer surgery, independent of country income. Without urgent strengthening of hospital infrastructure and resources, the reductions in cancer-associated mortality associated with improved access will not be realised

Global urban environmental change drives adaptation in white clover

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural clines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale

Microgeographical diversification of threespine stickleback: body shape–habitat correlations in a small, ecologically diverse Alaskan drainage

Adaptive radiations are a major source of evolutionary diversity in nature, and understanding how they originate and how organisms diversify during the early stages of adaptive radiation is a major problem in evolutionary biology. The relationship between habitat type and body shape variation was investigated in a postglacial radiation of threespine stickleback in the upper Fish Creek drainage of Cook Inlet, Alaska. Although small, the upper Fish Creek drainage includes ecologically diverse lakes and streams in close proximity to one another that harbour abundant stickleback. Specimens from ancestral anadromous and derived resident freshwater populations differed substantially and could be distinguished by body shape alone, suggesting that the initial stages of adaptation contribute disproportionately to evolutionary divergence. Body shape divergence among resident freshwater populations was also considerable, and phenotypic distances among samples from freshwater populations were associated with habitat type but not geographical distance. As expected, stream stickleback from slow-moving, structurally complex environments tended to have the deepest bodies, stickleback from lakes with a mostly benthic habitat were similar but less extreme, and stickleback from lakes with a mostly limnetic habitat were the most shallow-bodied, elongate fish. Beyond adapting rapidly to conditions in freshwater environments, stickleback can diversify rapidly over small geographical scales in freshwater systems despite opportunities for gene flow. This study highlights the importance of ecological heterogeneity over small geographical scales for evolutionary diversification during the early stages of adaptive radiation, and lays the foundation for future research on this ecologically diverse, postglacial system

Morphological Diversity of the Cynoscion Group (Perciformes: Sciaenidae) in the Gulf of Guayaquil Region, Ecuador: A Comparative Approach

We assess morphological diversity of species of the Cynoscion group in the Gulf of Guayaquil (GOG) using traditional morphometric methods. Five species from the GOG assemblage (C. albus, C. analis, C. phoxocephalus, C. squamipinnis, and Isopisthus remifer) are compared to four species from a relatively well-studied assemblage in the western Atlantic (C. arenarius, C. nebulosus, C. nothus, and C. regalis). The two regional species assemblages broadly overlap in morphology, but sympatric species segregate relatively well within each assemblage. The GOG species segregate primarily along the major axis of shape variation in the study, which is associated with variation in the anal, second dorsal, and caudal fins. The western Atlantic species segregate primarily along the second major axis of shape variation, which is most strongly associated with variation in gill raker length, and less strongly with pectoral fin length, eye diameter, and length of the third dorsal spine. Patterns of morphological divergence among the western Atlantic species support the hypothesis that morphological divergence is associated with ecological divergence. Comparisons across assemblages indicate that morphological divergence among species in the GOG is substantial. Consequently, Cynoscion species in the GOG may be highly divergent in ecological habits, which would have important management implications, but further ecological research is needed. This study provides a first glimpse into the major patterns of morphological diversification in the Cynoscion group

Effects of temperature and water turbulence on vertebral number and body shape in Astyanax mexicanus (Teleostei: Characidae).

Environmental changes can modify the phenotypic characteristics of populations, which in turn can influence their evolutionary trajectories. In ectotherms like fishes, temperature is a particularly important environmental variable that is known to have significant impacts on the phenotype. Here, we raised specimens of the surface ecomorph of Astyanax mexicanus at temperatures of 20°C, 23°C, 25°C, and 28°C to examine how temperature influenced vertebral number and body shape. To increase biological realism, specimens were also subjected to two water turbulence regimes. Vertebral number was counted from x-rays and body shape variation was analysed using geometric morphometric methods. Temperature significantly impacted mean total vertebral number, which increased at the lowest and highest temperatures. Fish reared at lower temperatures had relatively more precaudal vertebrae while fish reared at higher temperatures had relatively more caudal vertebrae. Vertebral anomalies, especially vertebral fusions, were most frequent at the extreme temperature treatments. Temperature significantly impacted body shape as well, with fish reared at 20°C being particularly divergent. Water turbulence also impacted body shape in a generally predictable manner, with specimens reared in high turbulence environments being more streamlined and having extended dorsal and anal fin bases. Variation in environmental variables thus resulted in significant changes in morphological traits known to impact fish fitness, indicating that A. mexicanus has the capacity to exhibit a range of phenotypic plasticity when challenged by environmental change. Understanding the biochemical mechanisms underlying this plasticity and whether adaptive plasticity has influenced the evolutionary radiation of the Characidae, are major directions for future research