Detection of genetically modified plant products by protein strip testing: an evaluation of real-life samples

The determination of the presence of genetically modified plant material by the detection of expressed genetically engineered proteins using lateral flow protein strip tests has been evaluated in different matrices. The presence of five major genetically engineered proteins (CP4-EPSPS, CryIAb, Cry9C, PAT/pat and PAT/bar protein) was detected at low levels in seeds, seed/leaf powder and leaf tissue from genetically modified soy, maize or oilseed rape. A comparison between &quot;protein strip test&quot; (PST) and &quot;polymerase chain reaction&quot; (PCR) analysis of genetically modified food/feed samples demonstrates complementarities of both techniques. -® Springer-Verlag 2007</p

Compositional Genome Contexts Affect Gene Expression Control in Sea Urchin Embryo

Gene expression is widely perceived as exclusively controlled by the information contained in cis-regulatory regions. These are built in a modular way, each module being a cluster of binding sites for the transcription factors that control the level, the location and the time at which gene transcription takes place. On the other hand, results from our laboratory have shown that gene expression is affected by the compositional properties (GC levels) of the isochores in which genes are embedded, i.e. the genome context. To clarify how compositional genomic properties affect the way cis-regulatory information is utilized, we have changed the genome context of a GFP-reporter gene containing the complete cis-regulatory region of the gene spdeadringer (spdri), expressed during sea urchin embryogenesis. We have observed that GC levels higher or lower than those found in the natural genome context can alter the reporter expression pattern. We explain this as the result of an interference with the functionality of specific modules in the gene's cis-regulatory region. From these observations we derive the notion that the compositional properties of the genome context can affect cis-regulatory control of gene expression. Therefore although the way a gene works depends on the information contained in its cis-regulatory region, availability of such information depends on the compositional properties of the genomic context

The LOFAR ling baseline snapshot calibrator survey

Aims:\ud An efficient means of locating calibrator sources for international LOw Frequency ARray (LOFAR) is developed and used to determine the average density of usable calibrator sources on the sky for subarcsecond observations at 140 MHz.\ud \ud Methods\ud We used the multi-beaming capability of LOFAR to conduct a fast and computationally inexpensive survey with the full international LOFAR array. Sources were preselected on the basis of 325 MHz arcminute-scale flux density using existing catalogues. By observing 30 different sources in each of the 12 sets of pointings per hour, we were able to inspect 630 sources in two hours to determine if they possess a sufficiently bright compact component to be usable as LOFAR delay calibrators.\ud \ud Results:\ud More than 40% of the observed sources are detected on multiple baselines between international stations and 86 are classified as satisfactory calibrators. We show that a flat low-frequency spectrum (from 74 to 325 MHz) is the best predictor of compactness at 140 MHz. We extrapolate from our sample to show that the sky density of calibrators that are sufficiently bright to calibrate dispersive and non-dispersive delays for the international LOFAR using existing methods is 1.0 per square degree.\ud \ud Conclusions:\ud The observed density of satisfactory delay calibrator sources means that observations with international LOFAR should be possible at virtually any point in the sky provided that a fast and efficient search, using the methodology described here, is conducted prior to the observation to identify the best calibrator

On energy consumption of switch-centric data center networks

Data center network (DCN) is the core of cloud computing and accounts for 40% energy spend when compared to cooling system, power distribution and conversion of the whole data center (DC) facility. It is essential to reduce the energy consumption of DCN to esnure energy-efficient (green) data center can be achieved. An analysis of DC performance and efficiency emphasizing the effect of bandwidth provisioning and throughput on energy proportionality of two most common switch-centric DCN topologies: three-tier (3T) and fat tree (FT) based on the amount of actual energy that is turned into computing power are presented. Energy consumption of switch-centric DCNs by realistic simulations is analyzed using GreenCloud simulator. Power related metrics were derived and adapted for the information technology equipment (ITE) processes within the DCN. These metrics are acknowledged as subset of the major metrics of power usage effectiveness (PUE) and data center infrastructure efficiency (DCIE), known to DCs. This study suggests that despite in overall FT consumes more energy, it spends less energy for transmission of a single bit of information, outperforming 3T

Microscopic evaluation of tongue dorsum biofilm from halitosis patients: an ex vivo study using confocal laser scanning microscopy (CLSM)

A category of oral biofilm which is still not well understood is the one coating the tongue, although various reports have associated its presence with halitosis in patients (1). The aim of the study was to visualize the three-dimensional bacteria distribution within the biofilm in order to better understand the ecological balance which regulates it. Tongue plaque samples from four halitosis-diagnosed patients and four healthy volunteers were analysed and compared. The biofilm was collected using a 0.1ml sterile inoculating loop. The visualization of the tongue dorsum biofilm was performed combining fluorescence in situ hybridization (FISH) and confocal laser scanning microscopy (CLSM) (2). Eubacteria, Streptococcus spp. and Fusobacterium nucleatum were stained using specific fluorescent genetic probes. Morphological analysis by CLSM illustrated the different distribution of the species which were tracked: Streptococcus spp. appeared immerged within the samples, while F. nucleatum was found in the peripheral areas of the samples. Furthermore, F. nucleatum appeared to exist without the presence of the Streptococcus spp. in the halitosis group. This study showed the architecture of tongue dorsum biofilm by means of imaging techniques, highlighting the distribution of the tracked bacterial species within the biofilm sample of the plaque.The authors are grateful to Dr. A. Zurcher and to Mr. G. Heuzeroth, University of Basel, for their help in the recruiting and sampling procedures

Certain subclasses of multivalent functions defined by new multiplier transformations

In the present paper the new multiplier transformations \mathrm{{\mathcal{J}% }}_{p}^{\delta }(\lambda ,\mu ,l) (\delta ,l\geq 0,\;\lambda \geq \mu \geq 0;\;p\in \mathrm{% }%\mathbb{N} )} of multivalent functions is defined. Making use of the operator $\mathrm{{\mathcal{J}}}_{p}^{\delta }(\lambda ,\mu ,l),$ two new subclasses $\mathcal{P}_{\lambda ,\mu ,l}^{\delta }(A,B;\sigma ,p)$ and $\widetilde{\mathcal{P}}_{\lambda ,\mu ,l}^{\delta }(A,B;\sigma ,p)$\textbf{\ }of multivalent analytic functions are introduced and investigated in the open unit disk. Some interesting relations and characteristics such as inclusion relationships, neighborhoods, partial sums, some applications of fractional calculus and quasi-convolution properties of functions belonging to each of these subclasses $\mathcal{P}_{\lambda ,\mu ,l}^{\delta }(A,B;\sigma ,p)$ and $\widetilde{\mathcal{P}}_{\lambda ,\mu ,l}^{\delta }(A,B;\sigma ,p)$ are investigated. Relevant connections of the definitions and results presented in this paper with those obtained in several earlier works on the subject are also pointed out

Kinetics of extraction and in situ transesterification of oils from spent coffee grounds

Resource limits, environmental concerns and unstable petroleum costs have led to an increased effort to develop alternative liquid fuels. Purpose grown feedstocks are expensive and demand additional resources such as land and water. Spent coffee grounds (SCGs) are a good potential low-cost feedstock, however, processing times and costs must be lowered in order to be cost competitive with fossil fuels. In this work, we investigated the kinetics of oil extraction from SCGs to explore if current methods of oil extraction could be hastened and if an integrated process which couples oil extraction and conversion to biodiesel stages in one single step (in situ transesterification) was viable. Kinetics of oil extraction from SCGs using n-hexane as solvent was studied as a function of temperature, solvent to solid ratio and water content. We have found that oil extraction times could be as low as 10 min due to higher diffusion coefficients of oils from SCGs. Further, we demonstrate, for the first time, the successful in situ transesterification of SCGs using different concentrations of sodium hydroxide as a catalyst and methanol to oil mole ratios. Both of these outcomes show promise for lowering biodiesel production costs from SCGs, a ubiquitous waste product around the world