Effect of Phosphate on Nodule Primordia of Soybean (Glycine Max Merrill) in Acid Soils in Rhizotron Experiments

To clarify whether P had a direct or indirect effect on the nodulation process of soybean grown in acid soils from Sitiung, West Sumatra, Indonesia, a series of rhizotron experiments, with special attention given to formation of nodule primordia, was conducted at Laboratory of Microbiology, Wageningen University in 1998-2000. It was shown that Ca and P were essential nutrients for root growth, nodule formation, and growth of soybean in the acid soils (Oxisols). Ca increased root growth, number of nodule primordia, nodules, and growth of the soybean plant. This positive effect of Ca was increased considerably by the application of P. Ca and P have a synergistic effect on biological nitrogen fixation (BNF) of soybean in acid soils. Ca is important for the establishment of nodules, whilst P is essential for the development and function of the formed nodules. P increased number of nodule primordia, thus it also has an important role in the initiation of nodule formation. From this study, it can be concluded that Ca and P are the most limiting nutrients for BNF of soybean in the acid soils of Sitiung, West Sumatra, Indonesia

Agrobiodiversity and Its Conservation in Nepal

Nepal is a part of the world\u27s biodiversity hotspot and ranks the 49th in the world for biodiversity. Agrobiodiversity and its conservation status were studied through literature review, field survey, key informant survey and focus group discussion. Results of field implementation of some good practices and action research were also documented. Among 24,300 total species in the country, 28% are agricultural genetic resources (AGRs), termed as agrobiodiversity. Agrobiodiversity has six components (crops, forages, livestock, aquatic, insects and microorganisms) and four sub-components (domesticated, semi-domesticated, wild relatives and wild edible) in Nepal. Agrobiodiversity on each component exists at agroecosystem, species, variety/breed/biotype/race/strain, genotype and allele levels, within an altitude range from 60 to 5,000 masl. There are 12 agroecosystems supporting 1026 species under crop component, 510 under forage, 35 under livestock, 250 under the aquatic animal, 17 under aquatic plant, 3,500 under insect and 800 under microorganism. An estimated loss of agrobiodiversity is 40%, however, farmers have reported up to 100% loss of AGRs in some areas for a particular species. Conservation of agrobiodiversity has been initiated since 1986. Four strategies namely ex-situ, on-farm, in-situ and breeding have been adopted for conservation and sustainable utilization of AGRs. Eighty good practices including process, methods and actions for managing agrobiodiversity have been in practice and these practices come under five conservation components (sensitization, method and approach, accelerator, value and enabling environment). Within the country, 18,765 accessions of AGRs have been conserved in different kinds of banks. A total of 24,683 accessions of Nepalese crops, forages and microbes have been conserved in different International and foreign genebanks. Some collections are conserved as safety duplication and safety backup in different CGIARs\u27 banks and World Seed Vault, Korea. Two global databases (GENESYS and EURISCO) have maintained 19,200 Nepalese accessions. Geographical Information System, Climate Analog Tool and biotechnological tools have been applied for better managing AGRs. Many stakeholders need to further concentrate on the conservation and utilization of AGRs. Global marketing of some native AGRs is necessary for sustaining agriculture and attracting young generations as well as conserving them through use

Characterisation of Soybean Rhizobial Strains From Java and Sumatra

To get insight in the structure of soybean rhizobial population native to Indonesian soils, a thorough survey of the occurrence of the soybean rhizobia were conducted in several locations in Java and Sumatra. A total of 51 different isolates of rhizobial strains were characterised phenotypically based on their symbiotic properties, and genetically using amplified ribosomal DNA restriction analysis (ARDRA). Based on their nodulation capacity on both soybean and the native legume mungbean, these rhizobial strains could be divided into a group of 16 strains specific for soybean only and another group of 35 promiscuous strains that nodulated both leguminous plants. Based on ARDRA of PCRamplified 16S rDNA and 16S-23S rDNA spacer fragments, the rhizobial strains isolated from Java differed with those from Sumatra. Six Java isolates and only one Sumatra isolate were classified as Bradyrhizobium japonicum and these similar to that of B. japonicum strain USDA 110. All these B. japonicum strains were highly specific for soybean. One isolate from Java showed a rather unique position. The remaining strains from Java (20), which were symbiotically promiscuous strains, were clustered in another group. This group and another group containing most Sumatra isolates were distinct from B. japonicum USDA 110 and therefore it is tempting to speculate that these represent indigenous soybean rhizobial bacteria. Application of agricultural practices, such as enhancement of rhizobial population, to increase soybean production is still essential and noteworthy in Sumatra

Assessment of algorithms for mitosis detection in breast cancer histopathology images

The proliferative activity of breast tumors, which is routinely estimated by counting of mitotic figures in hematoxylin and eosin stained histology sections, is considered to be one of the most important prognostic markers. However, mitosis counting is laborious, subjective and may suffer from low inter-observer agreement. With the wider acceptance of whole slide images in pathology labs, automatic image analysis has been proposed as a potential solution for these issues. In this paper, the results from the Assessment of Mitosis Detection Algorithms 2013 (AMIDA13) challenge are described. The challenge was based on a data set consisting of 12 training and 11 testing subjects, with more than one thousand annotated mitotic figures by multiple observers. Short descriptions and results from the evaluation of eleven methods are presented. The top performing method has an error rate that is comparable to the inter-observer agreement among pathologists

Re-assessing Nitrous Oxide Emissions from Croplands Across Mainland China

Reliable quantification of nitrous oxide emission is a key to assessing efficiency of use and environmental impacts of N fertilizers in crop production. In this study, N2O emission and yield were quantified with a database of 853 field measurements in 104 reported studies and a regression model was fitted to the associated environmental attributes and management practices from China’s croplands. The fitted emission model explained 48% of the variance in N2O emissions as a function of fertilizer rate, crop type, temperature, soil clay content, and the interaction between N rate and fertilizer type. With all other variables fixed, N2O emissions were lower with rice than with legumes and then other upland crops, lower with organic fertilizers than with mineral fertilizers. We used the subset of the dataset for rice - covering a full range of different typical water regimes, and estimated emissions from China’s rice cultivation to be 31.1 Gg N2O-N per year. The fitted yield model explained 35% of the variance in crop yield as a function of fertilizer rate, temperature, crop type, and soil clay content. Finally, the empirical models for N2O emission and crop yield were coupled to explore the optimum N rates (N rate with minimum N2O emission per unit yield) for combinations of crop and fertilizer types. Consequently, the optimum N application rate ranged between 100 kg N ha−1 and 190 kg N ha−1 respectively with organic and mineral fertilizers, and different crop types. This study therefore improved on existing empirical methods to estimate N2O emissions from China’s croplands and suggests how N rate may be optimized for different crops, fertilizers and site conditions

Distributed Medical Image Analysis and Diagnosis through Crowd-Sourced Games: A Malaria Case Study

In this work we investigate whether the innate visual recognition and learning capabilities of untrained humans can be used in conducting reliable microscopic analysis of biomedical samples toward diagnosis. For this purpose, we designed entertaining digital games that are interfaced with artificial learning and processing back-ends to demonstrate that in the case of binary medical diagnostics decisions (e.g., infected vs. uninfected), with the use of crowd-sourced games it is possible to approach the accuracy of medical experts in making such diagnoses. Specifically, using non-expert gamers we report diagnosis of malaria infected red blood cells with an accuracy that is within 1.25% of the diagnostics decisions made by a trained medical professional

Adaptive Introgression across Semipermeable Species Boundaries between Local Helicoverpa zea and Invasive Helicoverpa armigera Moths.

Hybridization between invasive and native species has raised global concern, given the dramatic increase in species range shifts and pest outbreaks due to anthropogenic dispersal. Nevertheless, secondary contact between sister lineages of local and invasive species provides a natural laboratory to understand the factors that determine introgression and the maintenance or loss of species barriers. Here, we characterize the early evolutionary outcomes following secondary contact between invasive Helicoverpa armigera and native H. zea in Brazil. We carried out whole-genome resequencing of Helicoverpa moths from Brazil in two temporal samples: during the outbreak of H. armigera in 2013 and 2017. There is evidence for a burst of hybridization and widespread introgression from local H. zea into invasive H. armigera coinciding with H. armigera expansion in 2013. However, in H. armigera, the admixture proportion and the length of introgressed blocks were significantly reduced between 2013 and 2017, suggesting selection against admixture. In contrast to the genome-wide pattern, there was striking evidence for adaptive introgression of a single region from the invasive H. armigera into local H. zea, including an insecticide resistance allele that increased in frequency over time. In summary, despite extensive gene flow after secondary contact, the species boundaries are largely maintained except for the single introgressed region containing the insecticide-resistant locus. We document the worst-case scenario for an invasive species, in which there are now two pest species instead of one, and the native species has acquired resistance to pyrethroid insecticides through introgression

Spectral discrimination of bulloak (Allocasuarina luehmannii) and associated woodland for habitat mapping of the endangered bulloak jewel butterfly (Hypochrysops piceata) in southern Queensland

The bulloak jewel butterfly (Hypochrysops piceata) is an endangered species due to a highly restricted distribution and complex life history, yet little is known of the availability of suitable habitat for future conservation. The aim of this study was to examine the potential of hyperspectral reflectance data for the discrimination of woodland species in support of bulloak jewel butterfly’s habitat mapping. Sites from known butterfly sightings in Leyburn, Southern Queensland, Australia, were examined using hyperspectral scanning and vegetation species discrimination. Reflectance data of eight woodland vegetation species (Allocasuarina luehmannii, Eucalyptus crebra, Eucalyptus populnea, Callitris glauca, Corymbia maculata, Angophora leicarpa, Acacia sparsiflora, and Jacksonia scoparia) were collected at the leaf and canopy levels using a full-range (350 to 2500 nm) hand-held nonimaging spectroradiometer. Partial least square (PLS) regression was used to interpret the bulloak tree spectra against other vegetation species. The PLS results indicated high-prediction accuracies ranging from 78% to 95% and 52% to 5% for canopy and leaf levels, respectively. The highest spectral separability was observed at the near-infrared bands (approximately at 700 to 1355 nm), followed by selected ranges in the short-wave infrared band where separability peaked at 1670 and 2210 nm. The results confirmed the feasible use of hyperspectral sensing for discriminating vegetation species and its potential use for habitat mapping of the endangered bulloak jewel butterfly