Visually significant dynamics for watershed segmentation

Abstrac

Dense Motion Estimation for Smoke

Motion estimation for highly dynamic phenomena such as smoke is an open challenge for Computer Vision. Traditional dense motion estimation algorithms have difficulties with non-rigid and large motions, both of which are frequently observed in smoke motion. We propose an algorithm for dense motion estimation of smoke. Our algorithm is robust, fast, and has better performance over different types of smoke compared to other dense motion estimation algorithms, including state of the art and neural network approaches. The key to our contribution is to use skeletal flow, without explicit point matching, to provide a sparse flow. This sparse flow is upgraded to a dense flow. In this paper we describe our algorithm in greater detail, and provide experimental evidence to support our claims.Comment: ACCV201

Dynamic spot analysis in the 2D electrophoresis gels images

Práce shrnuje faktory a parametry, které ovlivňují výsledky 2D elektroforézy, se zaměřením na zpracování obrazu jako jeden ze způsobů snížení nesprávné interpretace jejích výstupů. Proces zpracování obrazu využívá jako zdroj dat především obrazů z opakovaných provedení téhož pokusu, neboli víceplik. Pomocí analýzy obrazů víceplik je možno pozorovat nebo korigovat změny jednoho pokusu a také porovnávat je s výstupy jiných pokusů. Cílem práce je poskytnout podporu specialistovi, který má na starosti popsat vlastnosti struktur nacházejících se v elektroforetických obrazech.The text briefly describes factors and parameters which influence the results of 2D electrophoresis focusing on image processing as one manner to reduce incorrect interpretation of its outputs. As dataset, image processing performance uses images from repeated execution of one experiment also known as multiplicates. Using multiplicates analysis it is possible to observe or lower the changes of one experiment and to compare them with outputs of other experiments. The aim of this work is to provide support for specialist who takes care about describing the character patterns located in electrophoretic images.

Orally active antischistosomal early leads identified from the open access malaria box.

BACKGROUND: Worldwide hundreds of millions of schistosomiasis patients rely on treatment with a single drug, praziquantel. Therapeutic limitations and the threat of praziquantel resistance underline the need to discover and develop next generation drugs. METHODOLOGY: We studied the antischistosomal properties of the Medicines for Malaria Venture (MMV) malaria box containing 200 diverse drug-like and 200 probe-like compounds with confirmed in vitro activity against Plasmodium falciparum. Compounds were tested against schistosomula and adult Schistosoma mansoni in vitro. Based on in vitro performance, available pharmacokinetic profiles and toxicity data, selected compounds were investigated in vivo. PRINCIPAL FINDINGS: Promising antischistosomal activity (IC50: 1.4-9.5 µM) was observed for 34 compounds against schistosomula. Three compounds presented IC50 values between 0.8 and 1.3 µM against adult S. mansoni. Two promising early leads were identified, namely a N,N'-diarylurea and a 2,3-dianilinoquinoxaline. Treatment of S. mansoni infected mice with a single oral 400 mg/kg dose of these drugs resulted in significant worm burden reductions of 52.5% and 40.8%, respectively. CONCLUSIONS/SIGNIFICANCE: The two candidates identified by investigating the MMV malaria box are characterized by good pharmacokinetic profiles, low cytotoxic potential and easy chemistry and therefore offer an excellent starting point for antischistosomal drug discovery and development

Automatic Dti-based Parcellation Of The Corpus Callosum Through The Watershed Transform

Introduction: Parcellation of the corpus callosum (CC) in the midsagittal cross-section of the brain is of utmost importance for the study of diffusion properties within this structure. The complexity of this operation comes from the absence of macroscopic anatomical landmarks to help in dividing the CC into different callosal areas. In this paper we propose a completely automatic method for CC parcellation using diffusion tensor imaging (DTI). Methods: A dataset of 15 diffusion MRI volumes from normal subjects was used. For each subject, the midsagital slice was automatically detected based on the Fractional Anisotropy (FA) map. Then, segmentation of the CC in the midsgital slice was performed using the hierarchical watershed transform over a weighted FA-map. Finally, parcellation of the CC was obtained through the application of the watershed transform from chosen markers. Results: Parcellation results obtained were consistent for fourteen of the fifteen subjects tested. Results were similar to the ones obtained from tractography-based methods. Tractography confirmed that the cortical regions associated with each obtained CC region were consistent with the literature. Conclusions: A completely automatic DTI-based parcellation method for the CC was designed and presented. It is not based on tractography, which makes it fast and computationally inexpensive. While most of the existing methods for parcellation of the CC determine an average behavior for the subjects based on population studies, the proposed method reflects the diffusion properties specific for each subject. 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Automatic DTI-based parcellation of the corpus callosum through the watershed transform

Parcellation of the corpus callosum (CC) in the midsagittal cross-section of the brain is of utmost importance for the study of diffusion properties within this structure. The complexity of this operation comes from the absence of macroscopic anatomical landmarks to help in dividing the CC into different callosal areas. In this paper we propose a completely automatic method for CC parcellation using diffusion tensor imaging (DTI). A dataset of 15 diffusion MRI volumes from normal subjects was used. For each subject, the midsagital slice was automatically detected based on the Fractional Anisotropy (FA) map. Then, segmentation of the CC in the midsgital slice was performed using the hierarchical watershed transform over a weighted FA-map. Finally, parcellation of the CC was obtained through the application of the watershed transform from chosen markers. Parcellation results obtained were consistent for fourteen of the fifteen subjects tested. Results were similar to the ones obtained from tractography-based methods. Tractography confirmed that the cortical regions associated with each obtained CC region were consistent with the literature. A completely automatic DTI-based parcellation method for the CC was designed and presented. It is not based on tractography, which makes it fast and computationally inexpensive. While most of the existing methods for parcellation of the CC determine an average behavior for the subjects based on population studies, the proposed method reflects the diffusion properties specific for each subject. Parcellation boundaries are found based on the diffusion properties within each individual CC, which makes it more reliable and less affected by differences in size and shape among subjects302132143CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO - CNPQCOORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIOR - CAPESFUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO - FAPESPnão temnão temnão te

A multi-plot assessment of vegetation structure using a micro-unmanned aerial system (UAS) in a semi-arid savanna environment.

Unmanned Aerial Systems (UAS) have emerged as a capable platform for measuring vegetation health, structure and productivity. Products derived from UAS imagery typically have much finer spatial resolutions than traditional satellite or aircraft imagery, allowing the spectral and structural heterogeneity of vegetation to be mapped and monitored with more detail. This study uses UAS-captured imagery from the Chobe Enclave of northern Botswana. Flights were conducted across a gradient of savanna sites classified as grass-, shrub-, or tree-dominated. We compare multiple approaches for extracting woody vegetation structure from UAS imagery and assess correlations between in situ field measurements and UAS estimates. Sensor types were also compared, to determine whether multispectral data improves estimates of vegetation structure at the expense of spatial resolution. We found that leveraging multispectral reflectance information aids in crown delineation, areal estimates, and fractional cover of woody and non-woody vegetation within the study area. Comparisons are made between two crown delineation techniques, and the efficacy of each technique within savanna environments is discussed. The methods presented hold potential to inform field sampling protocols and UAS-based techniques for autonomous crown delineation in future dryland systems research. These findings advance research for field and remote sensing analyses assessing degradation in heterogeneous landscapes where varying vegetation structure has implications on land use and land functions

The darkness that shaped the void: dark energy and cosmic voids

Aims: We assess the sensitivity of void shapes to the nature of dark energy that was pointed out in recent studies. We investigate whether or not void shapes are useable as an observational probe in galaxy redshift surveys. We focus on the evolution of the mean void ellipticity and its underlying physical cause. Methods: We analyse the morphological properties of voids in five sets of cosmological N-body simulations, each with a different nature of dark energy. Comparing voids in the dark matter distribution to those in the halo population, we address the question of whether galaxy redshift surveys yield sufficiently accurate void morphologies. Voids are identified using the parameter free Watershed Void Finder. The effect of redshift distortions is investigated as well. Results: We confirm the statistically significant sensitivity of voids in the dark matter distribution. We identify the level of clustering as measured by \sigma_8(z) as the main cause of differences in mean void shape . We find that in the halo and/or galaxy distribution it is practically unfeasible to distinguish at a statistically significant level between the various cosmologies due to the sparsity and spatial bias of the sample.Comment: 22 pages, 23 figures, 3 tables; v2: added references and short comparison of void size results; accepted for publication by MNRA