Safety and EEG data quality of concurrent high-density EEG and high-speed fMRI at 3 Tesla

Concurrent EEG and fMRI is increasingly used to characterize the spatial-temporal dynamics of brain activity. However, most studies to date have been limited to conventional echo-planar imaging (EPI). There is considerable interest in integrating recently developed high-speed fMRI methods with high-density EEG to increase temporal resolution and sensitivity for task-based and resting state fMRI, and for detecting interictal spikes in epilepsy. In the present study using concurrent high-density EEG and recently developed high-speed fMRI methods, we investigate safety of radiofrequency (RF) related heating, the effect of EEG on cortical signal-to-noise ratio (SNR) in fMRI, and assess EEG data quality.The study compared EPI, multi-echo EPI, multi-band EPI and multi-slab echo-volumar imaging pulse sequences, using clinical 3 Tesla MR scanners from two different vendors that were equipped with 64- and 256-channel MR-compatible EEG systems, respectively, and receive only array head coils. Data were collected in 11 healthy controls (3 males, age range 18-70 years) and 13 patients with epilepsy (8 males, age range 21-67 years). Three of the healthy controls were scanned with the 256-channel EEG system, the other subjects were scanned with the 64-channel EEG system. Scalp surface temperature, SNR in occipital cortex and head movement were measured with and without the EEG cap. The degree of artifacts and the ability to identify background activity was assessed by visual analysis by a trained expert in the 64 channel EEG data (7 healthy controls, 13 patients).RF induced heating at the surface of the EEG electrodes during a 30-minute scan period with stable temperature prior to scanning did not exceed 1.0° C with either EEG system and any of the pulse sequences used in this study. There was no significant decrease in cortical SNR due to the presence of the EEG cap (p > 0.05). No significant differences in the visually analyzed EEG data quality were found between EEG recorded during high-speed fMRI and during conventional EPI (p = 0.78). Residual ballistocardiographic artifacts resulted in 58% of EEG data being rated as poor quality.This study demonstrates that high-density EEG can be safely implemented in conjunction with high-speed fMRI and that high-speed fMRI does not adversely affect EEG data quality. However, the deterioration of the EEG quality due to residual ballistocardiographic artifacts remains a significant constraint for routine clinical applications of concurrent EEG-fMRI

A comparative study of electrical potential sensors and Ag/AgCl electrodes for characterising spontaneous and event related electroencephalagram signals

For exactly 90 years researchers have used electroencephalography (EEG) as a window into the activities of the brain. Even now its high temporal resolution coupled with relatively low cost compares favourably to other neuroimaging techniques such as magnetoencephalography (MEG) and functional magnetic resonance imaging (fMRI). For the majority of this time the standard electrodes used for non-invasive monitoring of electrical activities of the brain have been Ag/AgCl metal electrodes. Although these electrodes provide a reliable method for recording EEG they suffer from noise, such as offset potential drift, and usability issues, for example, difficult skin preparation and cross-coupling of adjacent electrodes. In order to tackle these issues a prototype Electric Potential Sensor (EPS) device based on an auto-zero operational amplifier has been developed and evaluated. The absence of 1/f noise in these devices makes them ideal for use with signal frequencies of ~10 Hz or less. The EPS is a novel active ultrahigh impedance capacitively coupled sensor. The active electrodes are designed to be physically and electrically robust and chemically and biochemically inert. They are electrically insulated (anodized) and scalable. A comprehensive study was undertaken to compare the results of neural signals recorded by the EPS with a standard commercial EEG system. These studies comprised measurements of both free running EEG and Event Related Potentials (ERPs). Results demonstrate that the EPS provides a promising alternative, with many added benefits compared to standard EEG sensors, including reduced setup time, elimination of sensor cross-coupling, lack of a ground electrode and distortion of electrical potentials encountered when using standard gel electrodes. Quantitatively, highly similar signals were observed between the EPS and EEG sensors for both free running and evoked brain activity with cross correlations of higher than 0.9 between the EPS and a standard benchmark EEG system. Future developments of EPS-based neuroimaging include the implementation of a whole head ultra-dense EPS array, and the mapping of distributions of scalp recorded electrical potentials remotely

Interpretable Machine Learning for Electro-encephalography

While behavioral, genetic and psychological markers can provide important information about brain health, research in that area over the last decades has much focused on imaging devices such as magnetic resonance tomography (MRI) to provide non-invasive information about cognitive processes. Unfortunately, MRI based approaches, able to capture the slow changes in blood oxygenation levels, cannot capture electrical brain activity which plays out on a time scale up to three orders of magnitude faster. Electroencephalography (EEG), which has been available in clinical settings for over 60 years, is able to measure brain activity based on rapidly changing electrical potentials measured non-invasively on the scalp. Compared to MRI based research into neurodegeneration, EEG based research has, over the last decade, received much less interest from the machine learning community. But generally, EEG in combination with sophisticated machine learning offers great potential such that neglecting this source of information, compared to MRI or genetics, is not warranted. In collaborating with clinical experts, the ability to link any results provided by machine learning to the existing body of research is especially important as it ultimately provides an intuitive or interpretable understanding. Here, interpretable means the possibility for medical experts to translate the insights provided by a statistical model into a working hypothesis relating to brain function. To this end, we propose in our first contribution a method allowing for ultra-sparse regression which is applied on EEG data in order to identify a small subset of important diagnostic markers highlighting the main differences between healthy brains and brains affected by Parkinson's disease. Our second contribution builds on the idea that in Parkinson's disease impaired functioning of the thalamus causes changes in the complexity of the EEG waveforms. The thalamus is a small region in the center of the brain affected early in the course of the disease. Furthermore, it is believed that the thalamus functions as a pacemaker - akin to a conductor of an orchestra - such that changes in complexity are expressed and quantifiable based on EEG. We use these changes in complexity to show their association with future cognitive decline. In our third contribution we propose an extension of archetypal analysis embedded into a deep neural network. This generative version of archetypal analysis allows to learn an appropriate representation where every sample of a data set can be decomposed into a weighted sum of extreme representatives, the so-called archetypes. This opens up an interesting possibility of interpreting a data set relative to its most extreme representatives. In contrast, clustering algorithms describe a data set relative to its most average representatives. For Parkinson's disease, we show based on deep archetypal analysis, that healthy brains produce archetypes which are different from those produced by brains affected by neurodegeneration

Intelligent Biosignal Analysis Methods

This book describes recent efforts in improving intelligent systems for automatic biosignal analysis. It focuses on machine learning and deep learning methods used for classification of different organism states and disorders based on biomedical signals such as EEG, ECG, HRV, and others

Electroencephalogram signal acquisition in unshielded noisy environment

Researchers have used electroencephalography (EEG) as a window into the activities of the brain. High temporal resolution coupled with relatively low cost compares favourably to other neuroimaging techniques such as magnetoencephalography (MEG). For many years silver metal electrodes have been used for non-invasive monitoring electrical activities of the brain. Although these electrodes provide a reliable method for recording EEG they suffer from noise, such as offset potentials and drifts, and usability issues, e.g. skin prepa- ration and short circuiting of adjacent electrodes due to gel running. Low frequency noise performance is the key indicator in determining the signal to noise ratio of an EEG sensor. In order to tackle these issues a prototype Electric Potential Sensor (EPS) device based on an auto-zero operational amplifier has been developed and evaluated. The absence of 1/f noise in these devices makes them ideal for use with signal frequencies ~10Hz or less. The EPS is a novel active electrode electric potential sensor with ultrahigh input impedance. The active electrodes are designed to be physically and electrically robust and chemically and biochemically inert. They are electrically insulated (anodized) and scalable. These sensors are designed to be immersed in alcohol for sterilization purposes. A comprehensive study was undertaken to compare the results of EEG signals recorded by the EPS with different commercial systems. These studies comprised measurements of both free running EEG and Event Related Potentials. Strictly comparable signals were observed with cross correlations of higher than 0.9 between the EPS and other systems

Nonlinear brain dynamics as macroscopic manifestation of underlying many-body field dynamics

Neural activity patterns related to behavior occur at many scales in time and space from the atomic and molecular to the whole brain. Here we explore the feasibility of interpreting neurophysiological data in the context of many-body physics by using tools that physicists have devised to analyze comparable hierarchies in other fields of science. We focus on a mesoscopic level that offers a multi-step pathway between the microscopic functions of neurons and the macroscopic functions of brain systems revealed by hemodynamic imaging. We use electroencephalographic (EEG) records collected from high-density electrode arrays fixed on the epidural surfaces of primary sensory and limbic areas in rabbits and cats trained to discriminate conditioned stimuli (CS) in the various modalities. High temporal resolution of EEG signals with the Hilbert transform gives evidence for diverse intermittent spatial patterns of amplitude (AM) and phase modulations (PM) of carrier waves that repeatedly re-synchronize in the beta and gamma ranges at near zero time lags over long distances. The dominant mechanism for neural interactions by axodendritic synaptic transmission should impose distance-dependent delays on the EEG oscillations owing to finite propagation velocities. It does not. EEGs instead show evidence for anomalous dispersion: the existence in neural populations of a low velocity range of information and energy transfers, and a high velocity range of the spread of phase transitions. This distinction labels the phenomenon but does not explain it. In this report we explore the analysis of these phenomena using concepts of energy dissipation, the maintenance by cortex of multiple ground states corresponding to AM patterns, and the exclusive selection by spontaneous breakdown of symmetry (SBS) of single states in sequences.Comment: 31 page

In vitro Cortical Network Firing is Homeostatically Regulated: A Model for Sleep Regulation.

Prolonged wakefulness leads to a homeostatic response manifested in increased amplitude and number of electroencephalogram (EEG) slow waves during recovery sleep. Cortical networks show a slow oscillation when the excitatory inputs are reduced (during slow wave sleep, anesthesia), or absent (in vitro preparations). It was recently shown that a homeostatic response to electrical stimulation can be induced in cortical cultures. Here we used cortical cultures grown on microelectrode arrays and stimulated them with a cocktail of waking neuromodulators. We found that recovery from stimulation resulted in a dose-dependent homeostatic response. Specifically, the inter-burst intervals decreased, the burst duration increased, the network showed higher cross-correlation and strong phasic synchronized burst activity. Spectral power below <1.75 Hz significantly increased and the increase was related to steeper slopes of bursts. Computer simulation suggested that a small number of clustered neurons could potently drive the behavior of the network both at baseline and during recovery. Thus, this in vitro model appears valuable for dissecting network mechanisms of sleep homeostasis