Topology-aware equipartitioning with coscheduling on multicore systems

Over the last decade, multicore architectures have become omnipresent. Today, they are used in the whole product range from server systems to handheld computers. The deployed software still undergoes the slow transition from sequential to parallel. This transition, however, is gaining more and more momentum due to the increased availability of more sophisticated parallel programming environments, which replace the some-times crude results of ad-hoc parallelization. Combined with the ever increasing complexity of multicore architectures, this results in a scheduling problem that is different from what it has been, because features such as non-uniform memory access, shared caches, or simultaneous multithreading have to be considered. In this paper, we compare different ways of scheduling multiple parallel applications. Due to emerging parallel programming environments, we only consider malleable applications, i. e., applications where the parallelism degree can be changed on the fly. We propose a topology-aware scheduling scheme that combines equipartitioning and coscheduling. It does not suffer from the drawbacks of the individual concepts and also allows to run applications at different degrees of parallelisms without compromising fairness. We find that topology-awareness increases performance for all evaluated workloads. The combination with coscheduling is more sensitive towards the executed workloads. However, the gained versatility allows new use cases to be explored, which were not possible before

Efficient Scalable Computing through Flexible Applications and Adaptive Workloads

In this paper we introduce a methodology for dynamic job reconfiguration driven by the programming model runtime in collaboration with the global resource manager. We improve the system throughput by exploiting malleability techniques (in terms of number of MPI ranks) through the reallocation of resources assigned to a job during its execution. In our proposal, the OmpSs runtime reconfigures the number of MPI ranks during the execution of an application in cooperation with the Slurm workload manager. In addition, we take advantage of OmpSs offload semantics to allow application developers deal with data redistribution. By combining these elements a job is able to expand itself in order to exploit idle nodes or be shrunk if other queued jobs could be initiated. This novel approach adapts the system workload in order to increase the throughput as well as make a smarter use of the underlying resources. Our experiments demonstrate that this approach can reduce the total execution time of a practical workload by more than 40% while reducing the amount of resources by 30%.This work is supported by the Project TIN2014-53495-R and TIN2015-65316-P from MINECO and FEDER. Antonio J. Peña is cofinanced by MINECO under Juan de la Cierva fellowship number IJCI-2015-23266. Special thanks to José I. Aliaga for the conjugate gradient code.Peer ReviewedPostprint (author's final draft

Enhancing the performance of malleable MPI applications by using performance-aware dynamic reconfiguration

The work in this paper focuses on providing malleability to MPI applications by using a novel performance-aware dynamic reconfiguration technique. This paper describes the design and implementation of Flex-MPI, an MPI library extension which can automatically monitor and predict the performance of applications, balance and redistribute the workload, and reconfigure the application at runtime by changing the number of processes. Unlike existent approaches, our reconfiguring policy is guided by user-defined performance criteria. We focus on iterative SPMD programs, a class of applications with critical mass within the scientific community. Extensive experiments show that Flex-MPI can improve the performance, parallel efficiency, and cost-efficiency of MPI programs with a minimal effort from the programmer.This work has been partially supported by the Spanish Ministry of Economy and Competitiveness under the project TIN2013- 41350-P, Scalable Data Management Techniques for High-End Computing Systems, and EU under the COST Program Action IC1305, Network for Sustainable Ultrascale Computing (NESUS)Peer ReviewedPostprint (author's final draft

"Virtual malleability" applied to MPI jobs to improve their execution in a multiprogrammed environment"

This work focuses on scheduling of MPI jobs when executing in shared-memory multiprocessors (SMPs). The objective was to obtain the best performance in response time in multiprogrammed multiprocessors systems using batch systems, assuming all the jobs have the same priority. To achieve that purpose, the benefits of supporting malleability on MPI jobs to reduce fragmentation and consequently improve the performance of the system were studied. The contributions made in this work can be summarized as follows:· Virtual malleability: A mechanism where a job is assigned a dynamic processor partition, where the number of processes is greater than the number of processors. The partition size is modified at runtime, according to external requirements such as the load of the system, by varying the multiprogramming level, making the job contend for resources with itself. In addition to this, a mechanism which decides at runtime if applying local or global process queues to an application depending on the load balancing between processes of it. · A job scheduling policy, that takes decisions such as how many processes to start with and the maximum multiprogramming degree based on the type and number of applications running and queued. Moreover, as soon as a job finishes execution and where there are queued jobs, this algorithm analyzes whether it is better to start execution of another job immediately or just wait until there are more resources available. · A new alternative to backfilling strategies for the problema of window execution time expiring. Virtual malleability is applied to the backfilled job, reducing its partition size but without aborting or suspending it as in traditional backfilling. The evaluation of this thesis has been done using a practical approach. All the proposals were implemented, modifying the three scheduling levels: queuing system, processor scheduler and runtime library. The impact of the contributions were studied under several types of workloads, varying machine utilization, communication and, balance degree of the applications, multiprogramming level, and job size. Results showed that it is possible to offer malleability over MPI jobs. An application obtained better performance when contending for the resources with itself than with other applications, especially in workloads with high machine utilization. Load imbalance was taken into account obtaining better performance if applying the right queue type to each application independently.The job scheduling policy proposed exploited virtual malleability by choosing at the beginning of execution some parameters like the number of processes and maximum multiprogramming level. It performed well under bursty workloads with low to medium machine utilizations. However as the load increases, virtual malleability was not enough. That is because, when the machine is heavily loaded, the jobs, once shrunk are not able to expand, so they must be executed all the time with a partition smaller than the job size, thus degrading performance. Thus, at this point the job scheduling policy concentrated just in moldability.Fragmentation was alleviated also by applying backfilling techniques to the job scheduling algorithm. Virtual malleability showed to be an interesting improvement in the window expiring problem. Backfilled jobs even on a smaller partition, can continue execution reducing memory swapping generated by aborts/suspensions In this way the queueing system is prevented from reinserting the backfilled job in the queue and re-executing it in the future.Postprint (published version

Adaptive space-time sharing with SCOJO.

Coscheduling is a technique used to improve the performance of parallel computer applications under time sharing, i.e., to provide better response times than standard time sharing or space sharing. Dynamic coscheduling and gang scheduling are two main forms of coscheduling. In SCOJO (Share-based Job Coscheduling), we have introduced our own original framework to employ loosely coordinated dynamic coscheduling and a dynamic directory service in support of scheduling cross-site jobs in grid scheduling. SCOJO guarantees effective CPU shares by taking coscheduling effects into consideration and supports both time and CPU share reservation for cross-site job. However, coscheduling leads to high memory pressure and still involves problems like fragmentation and context-switch overhead, especially when applying higher multiprogramming levels. As main part of this thesis, we employ gang scheduling as more directly suitable approach for combined space-time sharing and extend SCOJO for clusters to incorporate adaptive space sharing into gang scheduling. We focus on taking advantage of moldable and malleable characteristics of realistic job mixes to dynamically adapt to varying system workloads and flexibly reduce fragmentation. In addition, our adaptive scheduling approach applies standard job-scheduling techniques like a priority and aging system, backfilling or easy backfilling. We demonstrate by the results of a discrete-event simulation that this dynamic adaptive space-time sharing approach can deliver better response times and bounded relative response times even with a lower multiprogramming level than traditional gang scheduling.Dept. of Computer Science. Paper copy at Leddy Library: Theses & Major Papers - Basement, West Bldg. / Call Number: Thesis2004 .H825. Source: Masters Abstracts International, Volume: 43-01, page: 0237. Adviser: A. Sodan. Thesis (M.Sc.)--University of Windsor (Canada), 2004

Processor Allocation Policies for Message-Passing Parallel Computers

When multiple jobs compete for processing resources on a parallel computer, the operating system kernel's processor allocation policy determines how many and which processors to allocate to each. This dissertation investigates the issues involved in constructing a processor allocation policy for large scale, message-passing parallel computers supporting a scientific workload. First, the issues that affect the performance of scheduling policies for message-passing parallel systems are examined. We argue that reasonable policies must provide nearly equal resource allocation to all runnable jobs and allocate, to a single job, processors that are in close proximity to one another. Second, the concept of efficiency preservation is defined as a characteristic of processor allocation policie..

"Virtual malleability" applied to MPI jobs to improve their execution in a multiprogrammed environment"

This work focuses on scheduling of MPI jobs when executing in shared-memory multiprocessors (SMPs). The objective was to obtain the best performance in response time in multiprogrammed multiprocessors systems using batch systems, assuming all the jobs have the same priority. To achieve that purpose, the benefits of supporting malleability on MPI jobs to reduce fragmentation and consequently improve the performance of the system were studied. The contributions made in this work can be summarized as follows:· Virtual malleability: A mechanism where a job is assigned a dynamic processor partition, where the number of processes is greater than the number of processors. The partition size is modified at runtime, according to external requirements such as the load of the system, by varying the multiprogramming level, making the job contend for resources with itself. In addition to this, a mechanism which decides at runtime if applying local or global process queues to an application depending on the load balancing between processes of it. · A job scheduling policy, that takes decisions such as how many processes to start with and the maximum multiprogramming degree based on the type and number of applications running and queued. Moreover, as soon as a job finishes execution and where there are queued jobs, this algorithm analyzes whether it is better to start execution of another job immediately or just wait until there are more resources available. · A new alternative to backfilling strategies for the problema of window execution time expiring. Virtual malleability is applied to the backfilled job, reducing its partition size but without aborting or suspending it as in traditional backfilling. The evaluation of this thesis has been done using a practical approach. All the proposals were implemented, modifying the three scheduling levels: queuing system, processor scheduler and runtime library. The impact of the contributions were studied under several types of workloads, varying machine utilization, communication and, balance degree of the applications, multiprogramming level, and job size. Results showed that it is possible to offer malleability over MPI jobs. An application obtained better performance when contending for the resources with itself than with other applications, especially in workloads with high machine utilization. Load imbalance was taken into account obtaining better performance if applying the right queue type to each application independently.The job scheduling policy proposed exploited virtual malleability by choosing at the beginning of execution some parameters like the number of processes and maximum multiprogramming level. It performed well under bursty workloads with low to medium machine utilizations. However as the load increases, virtual malleability was not enough. That is because, when the machine is heavily loaded, the jobs, once shrunk are not able to expand, so they must be executed all the time with a partition smaller than the job size, thus degrading performance. Thus, at this point the job scheduling policy concentrated just in moldability.Fragmentation was alleviated also by applying backfilling techniques to the job scheduling algorithm. Virtual malleability showed to be an interesting improvement in the window expiring problem. Backfilled jobs even on a smaller partition, can continue execution reducing memory swapping generated by aborts/suspensions In this way the queueing system is prevented from reinserting the backfilled job in the queue and re-executing it in the future

Processor Allocation Policies for Message-Passing Parallel Computers

When multiple jobs compete for processing resources on a parallel computer, the operating system kernel's processor allocation policy determines how many and which processors to allocate to each. In this paper we investigate the issues involved in constructing a processor allocation policy for large scale, message-passing parallel computers supporting a scientific workload. We make four specific contributions: ffl We define the concept of efficiency preservation as a characteristic of processor allocation policies . Efficiency preservation is the degree to which the decisions of the processor allocator degrade the processor efficiencies experienced by individual applications relative to their efficiencies when run alone. ffl We identify the interplay between the kernel processor allocation policy and the application load distribution policy as a determinant of efficiency preservation. ffl We specify the details of two families of processor allocation policies, called Equipartition a..