High-performance simulation and simulation methodologies

types: Editorial CommentThe realization of high performance simulation necessitates sophisticated simulation experimentation and optimization; this often requires non-trivial amounts of computing power. Distributed computing techniques and systems found in areas such as High Performance Computing (HPC), High Throughput Computing (HTC), e-infrastructures, grid and cloud computing can provide the required computing capacity for the execution of large and complex simulations. This extends the long tradition of adopting advances in distributed computing in simulation as evidenced by contributions from the parallel and distributed simulation community. There has arguably been a recent acceleration of innovation in distributed computing tools and techniques. This special issue presents the opportunity to showcase recent research that is assimilating these new advances in simulation. This special issue brings together a contemporary collection of work showcasing original research in the advancement of simulation theory and practice with distributed computing. This special issue has two parts. The first part (published in the preceding issue of the journal) included seven studies in high performance simulation that support applications including the study of epidemics, social networks, urban mobility and real-time embedded and cyber-physical systems. This second part focuses on original research in high performance simulation that supports a range of methods including DEVS, Petri nets and DES. Of the four papers for this issue, the manuscript by Bergero, et al. (2013), which was submitted, reviewed and accepted for the special issue, was published in an earlier issue of SIMULATION as the author requested early publication.Research Councils U

Application and support for high-performance simulation

types: Editorial CommentHigh performance simulation that supports sophisticated simulation experimentation and optimization can require non-trivial amounts of computing power. Advanced distributed computing techniques and systems found in areas such as High Performance Computing (HPC), High Throughput Computing (HTC), grid computing, cloud computing and e-Infrastructures are needed to provide effectively the computing power needed for the high performance simulation of large and complex models. In simulation there has been a long tradition of translating and adopting advances in distributed computing as shown by contributions from the parallel and distributed simulation community. This special issue brings together a contemporary collection of work showcasing original research in the advancement of simulation theory and practice with distributed computing. This special issue is divided into two parts. This first part focuses on research pertaining to high performance simulation that support a range of applications including the study of epidemics, social networks, urban mobility and real-time embedded and cyber-physical systems. Compared to other simulation techniques agent-based modeling and simulation is relatively new; however, it is increasingly being used to study large-scale problems. Agent-based simulations present challenges for high performance simulation as they can be complex and computationally demanding, and it is therefore not surprising that this special issue includes several articles on the high performance simulation of such systems.Research Councils U

Performance Evaluation of Parallel Computing on Agent-Based Models: The Minority Game Case

Simulations of agent-based models developed for topics of learning and inductive reasoning in artificial intelligence, social behavior, decision making, etc., are progressively requiring higher power processes while they increase their participation as management and political decisions support. In this work we develop the implementation of the Minority Game Model for HPC platforms in order to analyze the performance of simulations related to contexts of agent-based models for large scales. We compare times to parallel and sequential processes for several instances and get the corresponding speedup. For this work we use the MPI system with a hardware configuration of Master-Worker (Slave) paradigm with a cluster of upto 10 processors as workers. In order to improve efficiency, we evaluate performances for several sizes of clusters varying the size of the instances of the problem and detect optimum configurations for some instances of simulation.Eje: XIV Workshop de Procesamiento Distribuido y ParaleloRed de Universidades con Carreras de Informática (RedUNCI

The normative underpinnings of population-level alcohol use: An individual-level simulation model

Background. By defining what is “normal,” appropriate, expected, and unacceptable, social norms shape human behavior. However, the individual-level mechanisms through which social norms impact population-level trends in health-relevant behaviors are not well understood. Aims. To test the ability of social norms mechanisms to predict changes in population-level drinking patterns. Method. An individual-level model was developed to simulate dynamic normative mechanisms and behavioral rules underlying drinking behavior over time. The model encompassed descriptive and injunctive drinking norms and their impact on frequency and quantity of alcohol use. A microsynthesis initialized in 1979 was used as a demographically representative synthetic U.S. population. Three experiments were performed in order to test the modelled normative mechanisms. Results. Overall, the experiments showed limited influence of normative interventions on population-level alcohol use. An increase in the desire to drink led to the most meaningful changes in the population’s drinking behavior. The findings of the experiments underline the importance of autonomy, that is, the degree to which an individual is susceptible to normative influence. Conclusion. The model was able to predict theoretically plausible changes in drinking patterns at the population level through the impact of social mechanisms. Future applications of the model could be used to plan norms interventions pertaining to alcohol use as well as other health behaviors

High Performance Computing for Tumor Propagation Agent-based Model

Agent based modeling (ABM) and High Performance Computing (HPC) techniques are very popular in investigation and understanding cellular and molecular systems. The complex nature of these systems and the demand for emulation and comprehension at different levels in these models creates the expectation for new effective simulation strategies and tools. The present paper peruses the foresaid demands and the approaches for developing simulation in tumor model and its interactions using ABM and HPC. ABM allows the analysis of the actions and interactions of autonomous agents (cells in this case) to evaluate their effects on the system as a whole in order to re-create and predict the appearance of a complex phenomenon. This is a parametric model and it is necessary to explore the data model space to determine which combinations of adjustments cause the behaviors which are of interest. In this case, HPC is a useful tool to perform experiments in acceptable time.XVIII Workshop de Procesamiento Distribuido y Paralelo (WPDP).Red de Universidades con Carreras en Informática (RedUNCI

An Agent-Based Simulation API for Speculative PDES Runtime Environments

Agent-Based Modeling and Simulation (ABMS) is an effective paradigm to model systems exhibiting complex interactions, also with the goal of studying the emergent behavior of these systems. While ABMS has been effectively used in many disciplines, many successful models are still run only sequentially. Relying on simple and easy-to-use languages such as NetLogo limits the possibility to benefit from more effective runtime paradigms, such as speculative Parallel Discrete Event Simulation (PDES). In this paper, we discuss a semantically-rich API allowing to implement Agent-Based Models in a simple and effective way. We also describe the critical points which should be taken into account to implement this API in a speculative PDES environment, to scale up simulations on distributed massively-parallel clusters. We present an experimental assessment showing how our proposal allows to implement complicated interactions with a reduced complexity, while delivering a non-negligible performance increase

Agent-based modelling in synthetic biology

Biological systems exhibit complex behaviours that emerge at many different levels of organization. These span the regulation of gene expression within single cells to the use of quorum sensing to co-ordinate the action of entire bacterial colonies. Synthetic biology aims to make the engineering of biology easier, offering an opportunity to control natural systems and develop new synthetic systems with useful prescribed behaviours. However, in many cases, it is not understood how individual cells should be programmed to ensure the emergence of a required collective behaviour. Agent-based modelling aims to tackle this problem, offering a framework in which to simulate such systems and explore cellular design rules. In this article, I review the use of agent-based models in synthetic biology, outline the available computational tools, and provide details on recently engineered biological systems that are amenable to this approach. I further highlight the challenges facing this methodology and some of the potential future directions

A survey on factors that impact industrial agent acceptance

Although the agent technology has been with us some decades now, its acceptance in industry is still limited. As such, we conducted a survey and investigated the main factors that impact it. Thus, key industrial agent aspects are investigated-i.e., design, technology, intelligence/algorithms, standardization, hardware, challenges, applications, and cost. The results are analyzed and discussed, confirming that a decision on agent utilization in productive industrial systems is a complex undertaking, and there are still many issues to be resolved in order to lead to a wider acceptance of industrial agents.info:eu-repo/semantics/publishedVersio

Distributed Hybrid Simulation of the Internet of Things and Smart Territories

This paper deals with the use of hybrid simulation to build and compose heterogeneous simulation scenarios that can be proficiently exploited to model and represent the Internet of Things (IoT). Hybrid simulation is a methodology that combines multiple modalities of modeling/simulation. Complex scenarios are decomposed into simpler ones, each one being simulated through a specific simulation strategy. All these simulation building blocks are then synchronized and coordinated. This simulation methodology is an ideal one to represent IoT setups, which are usually very demanding, due to the heterogeneity of possible scenarios arising from the massive deployment of an enormous amount of sensors and devices. We present a use case concerned with the distributed simulation of smart territories, a novel view of decentralized geographical spaces that, thanks to the use of IoT, builds ICT services to manage resources in a way that is sustainable and not harmful to the environment. Three different simulation models are combined together, namely, an adaptive agent-based parallel and distributed simulator, an OMNeT++ based discrete event simulator and a script-language simulator based on MATLAB. Results from a performance analysis confirm the viability of using hybrid simulation to model complex IoT scenarios.Comment: arXiv admin note: substantial text overlap with arXiv:1605.0487