Some results on more flexible versions of Graph Motif

The problems studied in this paper originate from Graph Motif, a problem introduced in 2006 in the context of biological networks. Informally speaking, it consists in deciding if a multiset of colors occurs in a connected subgraph of a vertex-colored graph. Due to the high rate of noise in the biological data, more flexible definitions of the problem have been outlined. We present in this paper two inapproximability results for two different optimization variants of Graph Motif: one where the size of the solution is maximized, the other when the number of substitutions of colors to obtain the motif from the solution is minimized. We also study a decision version of Graph Motif where the connectivity constraint is replaced by the well known notion of graph modularity. While the problem remains NP-complete, it allows algorithms in FPT for biologically relevant parameterizations

The future of computing beyond Moore's Law.

Moore's Law is a techno-economic model that has enabled the information technology industry to double the performance and functionality of digital electronics roughly every 2 years within a fixed cost, power and area. Advances in silicon lithography have enabled this exponential miniaturization of electronics, but, as transistors reach atomic scale and fabrication costs continue to rise, the classical technological driver that has underpinned Moore's Law for 50 years is failing and is anticipated to flatten by 2025. This article provides an updated view of what a post-exascale system will look like and the challenges ahead, based on our most recent understanding of technology roadmaps. It also discusses the tapering of historical improvements, and how it affects options available to continue scaling of successors to the first exascale machine. Lastly, this article covers the many different opportunities and strategies available to continue computing performance improvements in the absence of historical technology drivers. This article is part of a discussion meeting issue 'Numerical algorithms for high-performance computational science'

Compositions created with constraint programming

This chapter surveys music constraint programming systems, and how composers have used them. The chapter motivates and explains how users of such systems describe intended musical results with constraints. This approach to algorithmic composition is similar to the way declarative and modular compositional rules have successfully been used in music theory for centuries as a device to describe composition techniques. In a systematic overview, this survey highlights the respective strengths of different approaches and systems from a composer's point of view, complementing other more technical surveys of this field. This text describes the music constraint systems PMC, Score-PMC, PWMC (and its successor Cluster Engine), Strasheela and Orchidée -- most are libraries of the composition systems PWGL or OpenMusic. These systems are shown in action by discussing the composition process of specific works by Jacopo Baboni-Schilingi, Magnus Lindberg, Örjan Sandred, Torsten Anders, Johannes Kretz and Jonathan Harvey

Compositions created with constraint programming

This chapter surveys music constraint programming systems, and how composers have used them. The chapter motivates and explains how users of such systems describe intended musical results with constraints. This approach to algorithmic composition is similar to the way declarative and modular compositional rules have successfully been used in music theory for centuries as a device to describe composition techniques. In a systematic overview, this survey highlights the respective strengths of different approaches and systems from a composer's point of view, complementing other more technical surveys of this field. This text describes the music constraint systems PMC, Score-PMC, PWMC (and its successor Cluster Engine), Strasheela and Orchidée -- most are libraries of the composition systems PWGL or OpenMusic. These systems are shown in action by discussing the composition process of specific works by Jacopo Baboni-Schilingi, Magnus Lindberg, Örjan Sandred, Torsten Anders, Johannes Kretz and Jonathan Harvey

Motifs in Temporal Networks

Networks are a fundamental tool for modeling complex systems in a variety of domains including social and communication networks as well as biology and neuroscience. Small subgraph patterns in networks, called network motifs, are crucial to understanding the structure and function of these systems. However, the role of network motifs in temporal networks, which contain many timestamped links between the nodes, is not yet well understood. Here we develop a notion of a temporal network motif as an elementary unit of temporal networks and provide a general methodology for counting such motifs. We define temporal network motifs as induced subgraphs on sequences of temporal edges, design fast algorithms for counting temporal motifs, and prove their runtime complexity. Our fast algorithms achieve up to 56.5x speedup compared to a baseline method. Furthermore, we use our algorithms to count temporal motifs in a variety of networks. Results show that networks from different domains have significantly different motif counts, whereas networks from the same domain tend to have similar motif counts. We also find that different motifs occur at different time scales, which provides further insights into structure and function of temporal networks

The ESCAPE project : Energy-efficient Scalable Algorithms for Weather Prediction at Exascale

In the simulation of complex multi-scale flows arising in weather and climate modelling, one of the biggest challenges is to satisfy strict service requirements in terms of time to solution and to satisfy budgetary constraints in terms of energy to solution, without compromising the accuracy and stability of the application. These simulations require algorithms that minimise the energy footprint along with the time required to produce a solution, maintain the physically required level of accuracy, are numerically stable, and are resilient in case of hardware failure. The European Centre for Medium-Range Weather Forecasts (ECMWF) led the ESCAPE (Energy-efficient Scalable Algorithms for Weather Prediction at Exascale) project, funded by Horizon 2020 (H2020) under the FET-HPC (Future and Emerging Technologies in High Performance Computing) initiative. The goal of ESCAPE was to develop a sustainable strategy to evolve weather and climate prediction models to next-generation computing technologies. The project partners incorporate the expertise of leading European regional forecasting consortia, university research, experienced high-performance computing centres, and hardware vendors. This paper presents an overview of the ESCAPE strategy: (i) identify domain-specific key algorithmic motifs in weather prediction and climate models (which we term Weather & Climate Dwarfs), (ii) categorise them in terms of computational and communication patterns while (iii) adapting them to different hardware architectures with alternative programming models, (iv) analyse the challenges in optimising, and (v) find alternative algorithms for the same scheme. The participating weather prediction models are the following: IFS (Integrated Forecasting System); ALARO, a combination of AROME (Application de la Recherche a l'Operationnel a Meso-Echelle) and ALADIN (Aire Limitee Adaptation Dynamique Developpement International); and COSMO-EULAG, a combination of COSMO (Consortium for Small-scale Modeling) and EULAG (Eulerian and semi-Lagrangian fluid solver). For many of the weather and climate dwarfs ESCAPE provides prototype implementations on different hardware architectures (mainly Intel Skylake CPUs, NVIDIA GPUs, Intel Xeon Phi, Optalysys optical processor) with different programming models. The spectral transform dwarf represents a detailed example of the co-design cycle of an ESCAPE dwarf. The dwarf concept has proven to be extremely useful for the rapid prototyping of alternative algorithms and their interaction with hardware; e.g. the use of a domain-specific language (DSL). Manual adaptations have led to substantial accelerations of key algorithms in numerical weather prediction (NWP) but are not a general recipe for the performance portability of complex NWP models. Existing DSLs are found to require further evolution but are promising tools for achieving the latter. Measurements of energy and time to solution suggest that a future focus needs to be on exploiting the simultaneous use of all available resources in hybrid CPU-GPU arrangements

A constraint-based framework to model harmony for algorithmic composition

Music constraint systems provide a rule-based approach to composition. Existing systems allow users to constrain the harmony, but the constrainable harmonic information is restricted to pitches and intervals between pitches. More abstract analytical information such as chord or scale types, their root, scale degrees, enharmonic note representations, whether a note is the third or fifth of a chord and so forth are not supported. However, such information is important for modelling various music theories. This research proposes a framework for modelling harmony at a high level of abstraction. It explicitly represents various analytical information to allow for complex theories of harmony. It is designed for efficient propagation-based constraint solvers. The framework supports the common 12-tone equal temperament, and arbitrary other equal temperaments. Users develop harmony models by applying user-defined constraints to its music representation. Three examples demonstrate the expressive power of the framework: (1) an automatic melody harmonisation with a simple harmony model; (2) a more complex model implementing large parts of Schoenberg’s tonal theory of harmony; and (3) a composition in extended tonality. Schoenberg’s comprehensive theory of harmony has not been computationally modelled before, neither with constraints programming nor in any other way.

Linear Time Subgraph Counting, Graph Degeneracy, and the Chasm at Size Six

We consider the problem of counting all k-vertex subgraphs in an input graph, for any constant k. This problem (denoted SUB-CNT_k) has been studied extensively in both theory and practice. In a classic result, Chiba and Nishizeki (SICOMP 85) gave linear time algorithms for clique and 4-cycle counting for bounded degeneracy graphs. This is a rich class of sparse graphs that contains, for example, all minor-free families and preferential attachment graphs. The techniques from this result have inspired a number of recent practical algorithms for SUB-CNT_k. Towards a better understanding of the limits of these techniques, we ask: for what values of k can SUB_CNT_k be solved in linear time? We discover a chasm at k=6. Specifically, we prove that for k < 6, SUB_CNT_k can be solved in linear time. Assuming a standard conjecture in fine-grained complexity, we prove that for all k ? 6, SUB-CNT_k cannot be solved even in near-linear time