High-Throughput System for the Early Quantification of Major Architectural Traits in Olive Breeding Trials Using UAV Images and OBIA Techniques

The need for the olive farm modernization have encouraged the research of more efficient crop management strategies through cross-breeding programs to release new olive cultivars more suitable for mechanization and use in intensive orchards, with high quality production and resistance to biotic and abiotic stresses. The advancement of breeding programs are hampered by the lack of efficient phenotyping methods to quickly and accurately acquire crop traits such as morphological attributes (tree vigor and vegetative growth habits), which are key to identify desirable genotypes as early as possible. In this context, an UAV-based high-throughput system for olive breeding program applications was developed to extract tree traits in large-scale phenotyping studies under field conditions. The system consisted of UAV-flight configurations, in terms of flight altitude and image overlaps, and a novel, automatic, and accurate object-based image analysis (OBIA) algorithm based on point clouds, which was evaluated in two experimental trials in the framework of a table olive breeding program, with the aim to determine the earliest date for suitable quantifying of tree architectural traits. Two training systems (intensive and hedgerow) were evaluated at two very early stages of tree growth: 15 and 27 months after planting. Digital Terrain Models (DTMs) were automatically and accurately generated by the algorithm as well as every olive tree identified, independently of the training system and tree age. The architectural traits, specially tree height and crown area, were estimated with high accuracy in the second flight campaign, i.e. 27 months after planting. Differences in the quality of 3D crown reconstruction were found for the growth patterns derived from each training system. These key phenotyping traits could be used in several olive breeding programs, as well as to address some agronomical goals. In addition, this system is cost and time optimized, so that requested architectural traits could be provided in the same day as UAV flights. This high-throughput system may solve the actual bottleneck of plant phenotyping of "linking genotype and phenotype," considered a major challenge for crop research in the 21st century, and bring forward the crucial time of decision making for breeders

Detection of irrigation inhomogeneities in an olive grove using the NDRE vegetation index obtained from UAV images

We have developed a simple photogrammetric method to identify heterogeneous areas of irrigated olive groves and vineyard crops using a commercial multispectral camera mounted on an unmanned aerial vehicle (UAV). By comparing NDVI, GNDVI, SAVI, and NDRE vegetation indices, we find that the latter shows irrigation irregularities in an olive grove not discernible with the other indices. This may render the NDRE as particularly useful to identify growth inhomogeneities in crops. Given the fact that few satellite detectors are sensible in the red-edge (RE) band and none with the spatial resolution offered by UAVs, this finding has the potential of turning UAVs into a local farmer’s favourite aid tool.Peer ReviewedPostprint (published version

Mapping olive varieties and within-field spatial variability using high resolution QuickBird imagery

[Abstract]: The growth of the Australian olive (Olea europaea L.) industry requires support from research to ensure its profitability and sustainability. To contribute to this goal, our project tested the ability of remote sensing imagery to map olive groves and their attributes. Specifically, this study aimed to: (a) discriminate olives varieties; and to (b) detect and interpret within-field spatial variability. Using high spatial resolution (2.8m) QuickBird multispectral imagery acquired over Yallamundi (southeast Queensland) on 24 December 2003, both visual interpretation and statistical (divergence) measures were employed to discriminate olive varieties. Similarly, the detection and interpretation of within-field spatial variability was conducted on enhanced false colour composite imagery, and confirmed by the use of statistical methods. Results showed that the two olive varieties (i.e. Kalamata and Frantoio) can be visually differentiated and mapped on the enhanced image based on texture. The spectral signature plots showed little difference in the mean spectral reflectance values, indicating that the two varieties have a very low spectral separability. In terms of within-field spatial variability, the presence or absence of Rhodes grass (Chloris gayana) was detected using visual interpretation, corroborated by the results of quantitative statistical measures. Spatial variability in soil properties, caused by the presence of a patch of sandy soil, was also detected visually. Finally, the “imprint” of former cover-type or land-use prior to olive plantation establishment in 1998 was identified. More work is being done to develop image classification techniques for mapping within-field spatial variability in olive varieties, biomass and condition using hyperspectral image data, as well as interpreting the cause of observed variability

Automated Mobile System for Accurate Outdoor Tree Crop Enumeration Using an Uncalibrated Camera.

This paper demonstrates an automated computer vision system for outdoor tree crop enumeration in a seedling nursery. The complete system incorporates both hardware components (including an embedded microcontroller, an odometry encoder, and an uncalibrated digital color camera) and software algorithms (including microcontroller algorithms and the proposed algorithm for tree crop enumeration) required to obtain robust performance in a natural outdoor environment. The enumeration system uses a three-step image analysis process based upon: (1) an orthographic plant projection method integrating a perspective transform with automatic parameter estimation; (2) a plant counting method based on projection histograms; and (3) a double-counting avoidance method based on a homography transform. Experimental results demonstrate the ability to count large numbers of plants automatically with no human effort. Results show that, for tree seedlings having a height up to 40 cm and a within-row tree spacing of approximately 10 cm, the algorithms successfully estimated the number of plants with an average accuracy of 95.2% for trees within a single image and 98% for counting of the whole plant population in a large sequence of images

Evaluation of pre/post-fire differenced spectral indices for assessing burn severity in a Mediterranean environment with landsat thematic mapper

In this study several pre/post-fire differenced spectral indices for assessing burn severity in a Mediterranean environment are evaluated. GeoCBI (Geo Composite Burn Index) field data of burn severity were correlated with remotely sensed measures, based on the NBR (Normalized Burn Ratio), the NDMI (Normalized Difference Moisture Index) and the NDVI (Normalized Difference Vegetation Index). In addition, the strength of the correlation was evaluated for specific fuel types and the influence of the regression model type is pointed out. The NBR was the best remotely sensed index for assessing burn severity, followed by the NDMI and the NDVI. For this case study of the 2007 Peloponnese fires, results show that the GeoCBI-dNBR (differenced NBR) approach yields a moderate-high R(2) = 0.65. Absolute indices outperformed their relative equivalents, which accounted for pre-fire vegetation state. The GeoCBI-dNBR relationship was stronger for forested ecotypes than for shrub lands. The relationship between the field data and the dNBR and dNDMI (differenced NDMI) was nonlinear, while the GeoCBI-dNDVI (differenced NDVI) relationship appeared linear

Automatic detection and segmentation of orchards using very high-resolution imagery

Cataloged from PDF version of article.Spectral information alone is often not sufficient to distinguish certain terrain classes such as permanent crops like orchards, vineyards, and olive groves from other types of vegetation. However, instances of these classes possess distinctive spatial structures that can be observable in detail in very high spatial resolution images. This paper proposes a novel unsupervised algorithm for the detection and segmentation of orchards. The detection step uses a texture model that is based on the idea that textures are made up of primitives (trees) appearing in a near-regular repetitive arrangement (planting patterns). The algorithm starts with the enhancement of potential tree locations by using multi-granularity isotropic filters. Then, the regularity of the planting patterns is quantified using projection profiles of the filter responses at multiple orientations. The result is a regularity score at each pixel for each granularity and orientation. Finally, the segmentation step iteratively merges neighboring pixels and regions belonging to similar planting patterns according to the similarities of their regularity scores and obtains the boundaries of individual orchards along with estimates of their granularities and orientations. Extensive experiments using Ikonos and QuickBird imagery as well as images taken from Google Earth show that the proposed algorithm provides good localization of the target objects even when no sharp boundaries exist in the image data. © 2012 IEEE

Assessment of the Accuracy of a Multi-Beam LED Scanner Sensor for Measuring Olive Canopies

MDPI. CC BYCanopy characterization has become important when trying to optimize any kind of agricultural operation in high-growing crops, such as olive. Many sensors and techniques have reported satisfactory results in these approaches and in this work a 2D laser scanner was explored for measuring canopy trees in real-time conditions. The sensor was tested in both laboratory and field conditions to check its accuracy, its cone width, and its ability to characterize olive canopies in situ. The sensor was mounted on a mast and tested in laboratory conditions to check: (i) its accuracy at different measurement distances; (ii) its measurement cone width with different reflectivity targets; and (iii) the influence of the target’s density on its accuracy. The field tests involved both isolated and hedgerow orchards, in which the measurements were taken manually and with the sensor. The canopy volume was estimated with a methodology consisting of revolving or extruding the canopy contour. The sensor showed high accuracy in the laboratory test, except for the measurements performed at 1.0 m distance, with 60 mm error (6%). Otherwise, error remained below 20 mm (1% relative error). The cone width depended on the target reflectivity. The accuracy decreased with the target density