Multiscale fluctuation-based dispersion entropy and its applications to neurological diseases

Fluctuation-based dispersion entropy (FDispEn) is a new approach to estimate the dynamical variability of the fluctuations of signals. It is based on Shannon entropy and fluctuation-based dispersion patterns. To quantify the physiological dynamics over multiple time scales, multiscale FDispEn (MFDE) is developed in this paper. MFDE is robust to the presence of baseline wanders or trends in the data. We evaluate MFDE, compared with popular multiscale sample entropy (MSE), multiscale fuzzy entropy (MFE), and the recently introduced multiscale dispersion entropy (MDE), on selected synthetic data and five neurological diseases’ datasets: 1) focal and non-focal electroencephalograms (EEGs); 2) walking stride interval signals for young, elderly, and Parkinson’s subjects; 3) stride interval fluctuations for Huntington’s disease and amyotrophic lateral sclerosis; 4) EEGs for controls and Alzheimer’s disease patients; and 5) eye movement data for Parkinson’s disease and ataxia. The MFDE avoids the problem of the undefined MSE values and, compared with the MFE and MSE, leads to more stable entropy values over the scale factors for white and pink noises. Overall, the MFDE is the fastest and most consistent method for the discrimination of different states of neurological data, especially where the mean value of a time series considerably changes along with the signal (e.g., eye movement data). This paper shows that MFDE is a relevant new metric to gain further insights into the dynamics of neurological diseases’ recordings. The MATLAB codes for the MFDE and its refined composite form are available in Xplore

Multiscale Fluctuation Dispersion Entropy of EEG as a Physiological Biomarker of Schizotypy

Altered electroencephalography (EEG) activity in schizotypal individuals is a powerful indicator of proneness towards psychosis. This alteration is beyond decreased alpha power often measured in resting state EEG. Multiscale fluctuation dispersion entropy (MFDE) measures the non-linear complexity of the fluctuations of EEGs and is a more effective approach compared to the traditional linear power spectral density (PSD) measures of EEG activity in patients with neurodegenerative disorders. In this study, we applied MFDE to EEG signals to distinguish high schizotypy (HS) and low schizotypy (LS) individuals. The study includes several trials from 29 participants psychometrically classified as HS (n=19) and LS (n=10). After preprocessing, MFDE was computed in frontal, parietal, central, temporal and occipital regions for each participant at multiple time scales. Statistical analysis and machine learning algorithms were used to calculate the differences in MFDE measures between the HS and LS groups. Our findings revealed significant differences in MFDE measures between LS and HS individuals in the delta frequency band (at time scale 100 ms). HS individuals exhibited increased complexity and irregularity compared to LS individuals in the delta frequency band particularly in the occipital region. Furthermore, the MFDE measures resulted in high accuracy (96.55%) in discriminating between HS and LS individuals and outperformed the models based on power spectrum, demonstrating the potential of MFDE as a neurophysiological marker for schizotypy traits. The increased non-linear fluctuation in delta frequency band in the occipital region of HS individuals implies the changes in cognitive functions, such as memory and attention, and has significant potential as a biomarker for schizotypy and proneness towards psychosis

Classification of ECG signal-based cardiac abnormalities using fluctuation-based dispersion entropy and first-order statistics

The heart is one of the most important organs in the human body. The presence of abnormalities in the heart can be fatal for a person. One way to detect heart abnormalities is an Electrocardiogram (EKG) signal examination. To facilitate the detection of ECG signal abnormalities, an automatic classification method is needed. Therefore, in this study, a method for classifying ECG signals using FdispEn (Fluctuation-based dispersion Entropy) and first-order statistics is proposed. FdispEn measures the uncertainty in the signal and is expected to be able to distinguish the physiological state of the ECG signal time series. In this study FdispEn and statistical computing were used as feature extraction of the ECG signal and combined with the Support Vector Machine (SVM) for the classification process of Normal ECG, AFIB (Atrial Fibrilation), and CHF (Congestive Heart Failure). The method proposed in this study generates an accuracy of 91.5%. The system proposed in this study is expected to assist in the clinical diagnosis of abnormalities in the heart. &nbsp

Entropy Analysis of Univariate Biomedical Signals:Review and Comparison of Methods

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A Fault Diagnosis Scheme for Gearbox Based on Improved Entropy and Optimized Regularized Extreme Learning Machine

The performance of a gearbox is sensitive to failures, especially in the long-term high speed and heavy load field. However, the multi-fault diagnosis in gearboxes is a challenging problem because of the complex and non-stationary measured signal. To obtain fault information more fully and improve the accuracy of gearbox fault diagnosis, this paper proposes a feature extraction method, hierarchical refined composite multiscale fluctuation dispersion entropy (HRCMFDE) to extract the fault features of rolling bearing and the gear vibration signals at different layers and scales. On this basis, a novel fault diagnosis scheme for the gearbox based on HRCMFDE, ReliefF and grey wolf optimizer regularized extreme learning machine is proposed. Firstly, HRCMFDE is employed to extract the original features, the multi-frequency time information can be evaluated simultaneously, and the fault feature information can be extracted more fully. After that, ReliefF is used to screen the sensitive features from the high-dimensional fault features. Finally, the sensitive features are inputted into the optimized regularized extreme learning machine to identify the fault states of the gearbox. Through three different types of gearbox experiments, the experimental results confirm that the proposed method has better diagnostic performance and generalization, which can effectively and accurately identify the different fault categories of the gearbox and outperforms other contrastive methods.</p

Entropy Measures in Machine Fault Diagnosis: Insights and Applications

Entropy, as a complexity measure, has been widely applied for time series analysis. One preeminent example is the design of machine condition monitoring and industrial fault diagnostic systems. The occurrence of failures in a machine will typically lead to non-linear characteristics in the measurements, caused by instantaneous variations, which can increase the complexity in the system response. Entropy measures are suitable to quantify such dynamic changes in the underlying process, distinguishing between different system conditions. However, notions of entropy are defined differently in various contexts (e.g., information theory and dynamical systems theory), which may confound researchers in the applied sciences. In this paper, we have systematically reviewed the theoretical development of some fundamental entropy measures and clarified the relations among them. Then, typical entropy-based applications of machine fault diagnostic systems are summarized. Further, insights into possible applications of the entropy measures are explained, as to where and how these measures can be useful towards future data-driven fault diagnosis methodologies. Finally, potential research trends in this area are discussed, with the intent of improving online entropy estimation and expanding its applicability to a wider range of intelligent fault diagnostic systems

QUANTIFYING GAIT ADAPTABILITY: FRACTALITY, COMPLEXITY, AND STABILITY DURING ASYMMETRIC WALKING

Successful walking necessitates modifying locomotor patterns when encountering organism, task, or environmental constraints. The structure of stride-to-stride variance (fractal dynamics) may represent the adaptive capacity of the locomotor system. To date, however, fractal dynamics have been assessed during unperturbed walking. Quantifying gait adaptability requires tasks that compel locomotor patterns to adapt. The purpose of this dissertation was to determine the potential relationship between fractal dynamics and gait adaptability. The studies presented herein represent a necessary endeavor to incorporate both an analysis of gait fractal dynamics and a task requiring adaptation of locomotor patterns. The adaptation task involved walking asymmetrically on a split-belt treadmill, whereby individuals adapted the relative phasing between legs. This experimental design provided a better understanding of the prospective relationship between fractal dynamics and adaptive capacity. Results from the first study indicated there was no association between unperturbed walking fractal dynamics and gait adaptability in young, healthy adults. However, there was an emergent relationship between asymmetric walking fractal dynamics and gait adaptability. Moreover, fractal dynamics increased during asymmetric walking. The second study investigated fractal dynamics and gait adaptability in healthy, active young and older adults. The findings from study 2 showed no differences between young and older adults regarding unperturbed or asymmetric walking fractal dynamics, or gait adaptability performance. The second study provided further evidence for the lack of association between unperturbed fractal dynamics and gait adaptability. Furthermore, study 2 delivered additional support that asymmetric walking not only yields increased fractal scaling values, but also associates with adaptive gait performance in older adults. Finally, while the first two studies explored stride time monofractality during various walking tasks, the third study aimed to understand the potential multifractality, i.e. temporal evolution of fractal dynamics, of unperturbed and asymmetric walking. The results suggest that unperturbed walking is monofractal in nature, while more challenging asymmetric walking reveals multifractal characteristics, and that multifractality does not associate with adaptive gait performance. This dissertation provides preliminary evidence for the lack of relationship between gait adaptability and unperturbed fractal dynamics, and the emergent association between adaptive gait and asymmetric walking fractality

Human Gait Analysis using Spatiotemporal Data Obtained from Gait Videos

Mit der Entwicklung von Deep-Learning-Techniken sind Deep-acNN-basierte Methoden zum Standard für Bildverarbeitungsaufgaben geworden, wie z. B. die Verfolgung menschlicher Bewegungen und Posenschätzung, die Erkennung menschlicher Aktivitäten und die Erkennung von Gesichtern. Deep-Learning-Techniken haben den Entwurf, die Implementierung und den Einsatz komplexer und vielfältiger Anwendungen verbessert, die nun in einer Vielzahl von Bereichen, einschließlich der Biomedizintechnik, eingesetzt werden. Die Anwendung von Computer-Vision-Techniken auf die medizinische Bild- und Videoanalyse hat zu bemerkenswerten Ergebnissen bei der Erkennung von Ereignissen geführt. Die eingebaute Fähigkeit von convolutional neural network (CNN), Merkmale aus komplexen medizinischen Bildern zu extrahieren, hat in Verbindung mit der Fähigkeit von long short term memory network (LSTM), die zeitlichen Informationen zwischen Ereignissen zu erhalten, viele neue Horizonte für die medizinische Forschung geschaffen. Der Gang ist einer der kritischen physiologischen Bereiche, der viele Störungen im Zusammenhang mit Alterung und Neurodegeneration widerspiegeln kann. Eine umfassende und genaue Ganganalyse kann Einblicke in die physiologischen Bedingungen des Menschen geben. Bestehende Ganganalyseverfahren erfordern eine spezielle Umgebung, komplexe medizinische Geräte und geschultes Personal für die Erfassung der Gangdaten. Im Falle von tragbaren Systemen kann ein solches System die kognitiven Fähigkeiten beeinträchtigen und für die Patienten unangenehm sein. Außerdem wurde berichtet, dass die Patienten in der Regel versuchen, während des Labortests bessere Leistungen zu erbringen, was möglicherweise nicht ihrem tatsächlichen Gang entspricht. Trotz technologischer Fortschritte stoßen wir bei der Messung des menschlichen Gehens in klinischen und Laborumgebungen nach wie vor an Grenzen. Der Einsatz aktueller Ganganalyseverfahren ist nach wie vor teuer und zeitaufwändig und erschwert den Zugang zu Spezialgeräten und Fachwissen. Daher ist es zwingend erforderlich, über Methoden zu verfügen, die langfristige Daten über den Gesundheitszustand des Patienten liefern, ohne doppelte kognitive Aufgaben oder Unannehmlichkeiten bei der Verwendung tragbarer Sensoren. In dieser Arbeit wird daher eine einfache, leicht zu implementierende und kostengünstige Methode zur Erfassung von Gangdaten vorgeschlagen. Diese Methode basiert auf der Aufnahme von Gehvideos mit einer Smartphone-Kamera in einer häuslichen Umgebung unter freien Bedingungen. Deep neural network (NN) verarbeitet dann diese Videos, um die Gangereignisse zu extrahieren. Die erkannten Ereignisse werden dann weiter verwendet, um verschiedene räumlich-zeitliche Parameter des Gangs zu quantifizieren, die für jedes Ganganalysesystem wichtig sind. In dieser Arbeit wurden Gangvideos verwendet, die mit einer Smartphone-Kamera mit geringer Auflösung außerhalb der Laborumgebung aufgenommen wurden. Viele Deep- Learning-basierte NNs wurden implementiert, um die grundlegenden Gangereignisse wie die Fußposition in Bezug auf den Boden aus diesen Videos zu erkennen. In der ersten Studie wurde die Architektur von AlexNet verwendet, um das Modell anhand von Gehvideos und öffentlich verfügbaren Datensätzen von Grund auf zu trainieren. Mit diesem Modell wurde eine Gesamtgenauigkeit von 74% erreicht. Im nächsten Schritt wurde jedoch die LSTM-Schicht in dieselbe Architektur integriert. Die eingebaute Fähigkeit von LSTM in Bezug auf die zeitliche Information führte zu einer verbesserten Vorhersage der Etiketten für die Fußposition, und es wurde eine Genauigkeit von 91% erreicht. Allerdings gibt es Schwierigkeiten bei der Vorhersage der richtigen Bezeichnungen in der letzten Phase des Schwungs und der Standphase jedes Fußes. Im nächsten Schritt wird das Transfer-Lernen eingesetzt, um die Vorteile von bereits trainierten tiefen NNs zu nutzen, indem vortrainierte Gewichte verwendet werden. Zwei bekannte Modelle, inceptionresnetv2 (IRNV-2) und densenet201 (DN-201), wurden mit ihren gelernten Gewichten für das erneute Training des NN auf neuen Daten verwendet. Das auf Transfer-Lernen basierende vortrainierte NN verbesserte die Vorhersage von Kennzeichnungen für verschiedene Fußpositionen. Es reduzierte insbesondere die Schwankungen in den Vorhersagen in der letzten Phase des Gangschwungs und der Standphase. Bei der Vorhersage der Klassenbezeichnungen der Testdaten wurde eine Genauigkeit von 94% erreicht. Da die Abweichung bei der Vorhersage des wahren Labels hauptsächlich ein Bild betrug, konnte sie bei einer Bildrate von 30 Bildern pro Sekunde ignoriert werden. Die vorhergesagten Markierungen wurden verwendet, um verschiedene räumlich-zeitliche Parameter des Gangs zu extrahieren, die für jedes Ganganalysesystem entscheidend sind. Insgesamt wurden 12 Gangparameter quantifiziert und mit der durch Beobachtungsmethoden gewonnenen Grundwahrheit verglichen. Die NN-basierten räumlich-zeitlichen Parameter zeigten eine hohe Korrelation mit der Grundwahrheit, und in einigen Fällen wurde eine sehr hohe Korrelation erzielt. Die Ergebnisse belegen die Nützlichkeit der vorgeschlagenen Methode. DerWert des Parameters über die Zeit ergab eine Zeitreihe, eine langfristige Darstellung des Ganges. Diese Zeitreihe konnte mit verschiedenen mathematischen Methoden weiter analysiert werden. Als dritter Beitrag in dieser Dissertation wurden Verbesserungen an den bestehenden mathematischen Methoden der Zeitreihenanalyse von zeitlichen Gangdaten vorgeschlagen. Zu diesem Zweck werden zwei Verfeinerungen bestehender entropiebasierter Methoden zur Analyse von Schrittintervall-Zeitreihen vorgeschlagen. Diese Verfeinerungen wurden an Schrittintervall-Zeitseriendaten von normalen und neurodegenerativen Erkrankungen validiert, die aus der öffentlich zugänglichen Datenbank PhysioNet heruntergeladen wurden. Die Ergebnisse zeigten, dass die von uns vorgeschlagene Methode eine klare Trennung zwischen gesunden und kranken Gruppen ermöglicht. In Zukunft könnten fortschrittliche medizinische Unterstützungssysteme, die künstliche Intelligenz nutzen und von den hier vorgestellten Methoden abgeleitet sind, Ärzte bei der Diagnose und langfristigen Überwachung des Gangs von Patienten unterstützen und so die klinische Arbeitsbelastung verringern und die Patientensicherheit verbessern

Towards Amyotrophic Lateral Sclerosis Interpretable Diagnosis Using Surface Electromyography

Amyotrophic Lateral Sclerosis (ALS) is a fast-progressing disease with no cure. It is diagnosed through the assessment of clinical exams, such as needle electromyography, which measures themuscles’ electrical activity by inserting a needle into themuscle tissue. Nevertheless, surface electromyography (SEMG) is emerging as a more practical and less painful alternative. Even though these exams provide relevant information regarding the electric structures conducted in the muscles, ALS symptoms are similar to those of other neurological disorders, preventing a faster detection of the disease. This dissertation focuses on implementing and analyzing innovative SEMG features related to the morphology of the functional structures present in the signal. To assess the efficiency of these features, a framework is proposed, aiming to distinguish healthy from pathological signals through the use of a classification algorithm. The classification task was performed using SEMG signals acquired from the upper limb muscles of healthy and ALS subjects. The results show the utility of employing the proposed set of features for ALS diagnosis, with an F1 Score higher than 80% in most experimental conditions. The novel features improved the model’s overall performance when combined with other state-of-art SEMG features and also demonstrated efficiency when used individually. These outcomes are of significant importance in supporting the use of SEMG as a complementary diagnosis exam. The proposed features demonstrate promising contributions for better and faster detection of ALS and increased classification interpretabilityA Esclerose Lateral Amiotrófica (ELA) é uma doença incurável de progressão rápida. O seu diagnóstico é feito através da avaliação de exames clínicos como a eletromiografia de profundidade, que mede a atividade elétrica muscular com agulhas inseridas no músculo. No entanto, a eletromiografia de superfície (SEMG) surge como uma alternativa mais prática e menos dolorosa. Embora ambos os exames forneçam informações relevantes sobre as estruturas elétricas conduzidas nos músculos, os sintomas da ELA são semelhantes aos de outras doenças neurológicas, impedindo uma identificação mais precoce da doença. Esta dissertação foca-se na implementação e análise de atributos inovadores de SEMG relacionados com a morfologia das estruturas funcionais presentes no sinal. Para avaliar a eficiência destes atributos, é proposto um framework, com o objetivo de distinguir sinais saudáveis e sinais patológicos através de um algoritmo de classificação. A tarefa de classificação foi realizada utilizando sinais de SEMG adquiridos dos músculos dos membros superiores de indivíduos saudáveis e com ELA. Os resultados demonstram a utilidade do conjunto de atributos proposto para o diagnóstico de ELA, com uma métrica de classificação F1 superior a 80% na maioria das condições experimentais. Os novos atributos melhoraram o desempenho geral do modelo quando combinados com outros atributos de SEMG do estado da arte, e também se comprovaram eficientes quando aplicados individualmente. Estes resultados são de grande importância na justificação da aplicabilidade da SEMG como um exame complementar de diagnóstico da ELA. Os atributos apresentados demonstram ser promissores para um melhor e mais rápido diagnóstico, e facilitam a explicação dos resultados da classificação devido à sua interpretabilidade