A domain-specific high-level programming model

International audienceNowadays, computing hardware continues to move toward more parallelism and more heterogeneity, to obtain more computing power. From personal computers to supercomputers, we can find several levels of parallelism expressed by the interconnections of multi-core and many-core accelerators. On the other hand, computing software needs to adapt to this trend, and programmers can use parallel programming models (PPM) to fulfil this difficult task. There are different PPMs available that are based on tasks, directives, or low level languages or library. These offer higher or lower abstraction levels from the architecture by handling their own syntax. However, to offer an efficient PPM with a greater (additional) high-levelabstraction level while saving on performance, one idea is to restrict this to a specific domain and to adapt it to a family of applications. In the present study, we propose a high-level PPM specific to digital signal processing applications. It is based on data-flow graph models of computation, and a dynamic runtime model of execution (StarPU). We show how the user can easily express this digital signal processing application, and can take advantage of task, data and graph parallelism in the implementation, to enhance the performances of targeted heterogeneous clusters composed of CPUs and different accelerators (e.g., GPU, Xeon Phi

On Design and Optimization of Convolutional Neural Network for Embedded Systems

This work presents the research on optimizing neural networks and deploying them for real-time practical applications. We analyze different optimization methods, namely binarization, separable convolution and pruning. We implement each method for the application of vehicle classification and we empirically evaluate and analyze the results. The objective is to make large neural networks suitable for real-time applications by reducing the computation requirements through these optimization approaches. The data set is of vehicles from 4 classes of vehicle types, and a convolutional model was used to solve the problem initially. Our results show that these optimization methods offer many performance benefits in this application in terms of reduced execution time (by up to 5 ×), reduced model storage requirements, with out largely impacting accuracy, making them a suitable tool for use in streamlining heavy neural networks to be used on resource-constrained envrionments. The platforms used in the research are a desktop platform, and two embedded platforms

A Dataflow Framework For Developing Flexible Embedded Accelerators A Computer Vision Case Study.

The focus of this dissertation is the design and the implementation of a computing platform which can accelerate data processing in the embedded computation domain. We focus on a heterogeneous computing platform, whose hardware implementation can approach the power and area efficiency of specialized designs, while remaining flexible across the application domain. The multi-core architectures require parallel programming, which is widely-regarded as more challenging than sequential programming. Although shared memory parallel programs may be fairly easy to write (using OpenMP, for example), they are quite hard to optimize; providing embedded application developers with optimizing tools and programming frameworks is a challenge. The heterogeneous specialized elements make the problem even more difficult. Dataflow is a parallel computation model that relies exclusively on message passing, and that has some advantages over parallel programming tools in wide use today: simplicity, graphical representation, and determinism. Dataflow model is also a good match to streaming applications, such as audio, video and image processing, which operate on large sequences of data and are characterized by abundant parallelism and regular memory access patterns. Dataflow model of computation has gained acceptance in simulation and signal-processing communities. This thesis evaluates the applicability of the dataflow model for implementing domain-specific embedded accelerators for streaming applications

Towards Efficient Resource Allocation for Embedded Systems

Das Hauptthema ist die dynamische Ressourcenverwaltung in eingebetteten Systemen, insbesondere die Verwaltung von Rechenzeit und Netzwerkverkehr auf einem MPSoC. Die Idee besteht darin, eine Pipeline für die Verarbeitung von Mobiler Kommunikation auf dem Chip dynamisch zu schedulen, um die Effizienz der Hardwareressourcen zu verbessern, ohne den Ressourcenverbrauch des dynamischen Schedulings dramatisch zu erhöhen. Sowohl Software- als auch Hardwaremodule werden auf Hotspots im Ressourcenverbrauch untersucht und optimiert, um diese zu entfernen. Da Applikationen im Bereich der Signalverarbeitung normalerweise mit Hilfe von SDF-Diagrammen beschrieben werden können, wird deren dynamisches Scheduling optimiert, um den Ressourcenverbrauch gegenüber dem üblicherweise verwendeten statischen Scheduling zu verbessern. Es wird ein hybrider dynamischer Scheduler vorgestellt, der die Vorteile von Processing-Networks und der Planung von Task-Graphen kombiniert. Es ermöglicht dem Scheduler, ein Gleichgewicht zwischen der Parallelisierung der Berechnung und der Zunahme des dynamischen Scheduling-Aufands optimal abzuwägen. Der resultierende dynamisch erstellte Schedule reduziert den Ressourcenverbrauch um etwa 50%, wobei die Laufzeit im Vergleich zu einem statischen Schedule nur um 20% erhöht wird. Zusätzlich wird ein verteilter dynamischer SDF-Scheduler vorgeschlagen, der das Scheduling in verschiedene Teile zerlegt, die dann zu einer Pipeline verbunden werden, um mehrere parallele Prozessoren einzubeziehen. Jeder Scheduling-Teil wird zu einem Cluster mit Load-Balancing erweitert, um die Anzahl der parallel laufenden Scheduling-Jobs weiter zu erhöhen. Auf diese Weise wird dem vorhandene Engpass bei dem dynamischen Scheduling eines zentralisierten Schedulers entgegengewirkt, sodass 7x mehr Prozessoren mit dem Pipelined-Clustered-Dynamic-Scheduler für eine typische Signalverarbeitungsanwendung verwendet werden können. Das neue dynamische Scheduling-System setzt das Vorhandensein von drei verschiedenen Kommunikationsmodi zwischen den Verarbeitungskernen voraus. Bei der Emulation auf Basis des häufig verwendeten RDMA-Protokolls treten Leistungsprobleme auf. Sehr gut kann RDMA für einmalige Punkt-zu-Punkt-Datenübertragungen verwendet werden, wie sie bei der Ausführung von Task-Graphen verwendet werden. Process-Networks verwenden normalerweise Datenströme mit hohem Volumen und hoher Bandbreite. Es wird eine FIFO-basierte Kommunikationslösung vorgestellt, die einen zyklischen Puffer sowohl im Sender als auch im Empfänger implementiert, um diesen Bedarf zu decken. Die Pufferbehandlung und die Datenübertragung zwischen ihnen erfolgen ausschließlich in Hardware, um den Software-Overhead aus der Anwendung zu entfernen. Die Implementierung verbessert die Zugriffsverwaltung mehrerer Nutzer auf flächen-effiziente Single-Port Speichermodule. Es werden 0,8 der theoretisch möglichen Bandbreite, die normalerweise nur mit flächenmäßig teureren Dual-Port-Speichern erreicht wird. Der dritte Kommunikationsmodus definiert eine einfache Message-Passing-Implementierung, die ohne einen Verbindungszustand auskommt. Dieser Modus wird für eine effiziente prozessübergreifende Kommunikation des verteilten Scheduling-Systems und der engen Ansteuerung der restlichen Prozessoren benötigt. Eine Flusskontrolle in Hardware stellt sicher, dass eine große Anzahl von Sendern Nachrichten an denselben Empfänger senden kann. Dabei wird garantiert, dass alle Nachrichten korrekt empfangen werden, ohne dass eine Verbindung hergestellt werden muss und die Nachrichtenlaufzeit gering bleibt. Die Arbeit konzentriert sich auf die Optimierung des Codesigns von Hardware und Software, um die kompromisslose Ressourceneffizienz der dynamischen SDF-Graphen-Planung zu erhöhen. Besonderes Augenmerk wird auf die Abhängigkeiten zwischen den Ebenen eines verteilten Scheduling-Systems gelegt, das auf der Verfügbarkeit spezifischer hardwarebeschleunigter Kommunikationsmethoden beruht.:1 Introduction 1.1 Motivation 1.2 The Multiprocessor System on Chip Architecture 1.3 Concrete MPSoC Architecture 1.4 Representing LTE/5G baseband processing as Static Data Flow 1.5 Compuation Stack 1.6 Performance Hotspots Addressed 1.7 State of the Art 1.8 Overview of the Work 2 Hybrid SDF Execution 2.1 Addressed Performance Hotspot 2.2 State of the Art 2.3 Static Data Flow Graphs 2.4 Runtime Environment 2.5 Overhead of Deloying Tasks to a MPSoC 2.6 Interpretation of SDF Graphs as Task Graphs 2.7 Interpreting SDF Graphs as Process Networks 2.8 Hybrid Interpretation 2.9 Graph Topology Considerations 2.10 Theoretic Impact of Hybrid Interpretation 2.11 Simulating Hybrid Execution 2.12 Pipeline SDF Graph Example 2.13 Random SDF Graphs 2.14 LTE-like SDF Graph 2.15 Key Lernings 3 Distribution of Management 3.1 Addressed Performance Hotspot 3.2 State of the Art 3.3 Revising Deployment Overhead 3.4 Distribution of Overhead 3.5 Impact of Management Distribution to Resource Utilization 3.6 Reconfigurability 3.7 Key Lernings 4 Sliced FIFO Hardware 4.1 Addressed Performance Hotspot 4.2 State of the Art 4.3 System Environment 4.4 Sliced Windowed FIFO buffer 4.5 Single FIFO Evaluation 4.6 Multiple FIFO Evalutaion 4.7 Hardware Implementation 4.8 Key Lernings 5 Message Passing Hardware 5.1 Addressed Performance Hotspot 5.2 State of the Art 5.3 Message Passing Regarded as Queueing 5.4 A Remote Direct Memory Access Based Implementation 5.5 Hardware Implementation Concept 5.6 Evalutation of Performance 5.7 Key Lernings 6 SummaryThe main topic is the dynamic resource allocation in embedded systems, especially the allocation of computing time and network traffic on an multi processor system on chip (MPSoC). The idea is to dynamically schedule a mobile communication signal processing pipeline on the chip to improve hardware resource efficiency while not dramatically improve resource consumption because of dynamic scheduling overhead. Both software and hardware modules are examined for resource consumption hotspots and optimized to remove them. Since signal processing can usually be described with the help of static data flow (SDF) graphs, the dynamic handling of those is optimized to improve resource consumption over the commonly used static scheduling approach. A hybrid dynamic scheduler is presented that combines benefits from both processing networks and task graph scheduling. It allows the scheduler to optimally balance parallelization of computation and addition of dynamic scheduling overhead. The resulting dynamically created schedule reduces resource consumption by about 50%, with a runtime increase of only 20% compared to a static schedule. Additionally, a distributed dynamic SDF scheduler is proposed that splits the scheduling into different parts, which are then connected to a scheduling pipeli ne to incorporate multiple parallel working processors. Each scheduling stage is reworked into a load-balanced cluster to increase the number of parallel scheduling jobs further. This way, the still existing dynamic scheduling bottleneck of a centralized scheduler is widened, allowing handling 7x more processors with the pipelined, clustered dynamic scheduler for a typical signal processing application. The presented dynamic scheduling system assumes the presence of three different communication modes between the processing cores. When emulated on top of the commonly used remote direct memory access (RDMA) protocol, performance issues are encountered. Firstly, RDMA can neatly be used for single-shot point-to-point data transfers, like used in task graph scheduling. Process networks usually make use of high-volume and high-bandwidth data streams. A first in first out (FIFO) communication solution is presented that implements a cyclic buffer on both sender and receiver to serve this need. The buffer handling and data transfer between them are done purely in hardware to remove software overhead from the application. The implementation improves the multi-user access to area-efficient single port on-chip memory modules. It achieves 0.8 of the theoretically possible bandwidth, usually only achieved with area expensive dual-port memories. The third communication mode defines a lightweight message passing (MP) implementation that is truly connectionless. It is needed for efficient inter-process communication of the distributed and clustered scheduling system and the worker processing units’ tight coupling. A hardware flow control assures that an arbitrary number of senders can spontaneously start sending messages to the same receiver. Yet, all messages are guaranteed to be correctly received while eliminating the need for connection establishment and keeping a low message delay. The work focuses on the hardware-software codesign optimization to increase the uncompromised resource efficiency of dynamic SDF graph scheduling. Special attention is paid to the inter-level dependencies in developing a distributed scheduling system, which relies on the availability of specific hardwareaccelerated communication methods.:1 Introduction 1.1 Motivation 1.2 The Multiprocessor System on Chip Architecture 1.3 Concrete MPSoC Architecture 1.4 Representing LTE/5G baseband processing as Static Data Flow 1.5 Compuation Stack 1.6 Performance Hotspots Addressed 1.7 State of the Art 1.8 Overview of the Work 2 Hybrid SDF Execution 2.1 Addressed Performance Hotspot 2.2 State of the Art 2.3 Static Data Flow Graphs 2.4 Runtime Environment 2.5 Overhead of Deloying Tasks to a MPSoC 2.6 Interpretation of SDF Graphs as Task Graphs 2.7 Interpreting SDF Graphs as Process Networks 2.8 Hybrid Interpretation 2.9 Graph Topology Considerations 2.10 Theoretic Impact of Hybrid Interpretation 2.11 Simulating Hybrid Execution 2.12 Pipeline SDF Graph Example 2.13 Random SDF Graphs 2.14 LTE-like SDF Graph 2.15 Key Lernings 3 Distribution of Management 3.1 Addressed Performance Hotspot 3.2 State of the Art 3.3 Revising Deployment Overhead 3.4 Distribution of Overhead 3.5 Impact of Management Distribution to Resource Utilization 3.6 Reconfigurability 3.7 Key Lernings 4 Sliced FIFO Hardware 4.1 Addressed Performance Hotspot 4.2 State of the Art 4.3 System Environment 4.4 Sliced Windowed FIFO buffer 4.5 Single FIFO Evaluation 4.6 Multiple FIFO Evalutaion 4.7 Hardware Implementation 4.8 Key Lernings 5 Message Passing Hardware 5.1 Addressed Performance Hotspot 5.2 State of the Art 5.3 Message Passing Regarded as Queueing 5.4 A Remote Direct Memory Access Based Implementation 5.5 Hardware Implementation Concept 5.6 Evalutation of Performance 5.7 Key Lernings 6 Summar

Synthesizing Functional Reactive Programs

Functional Reactive Programming (FRP) is a paradigm that has simplified the construction of reactive programs. There are many libraries that implement incarnations of FRP, using abstractions such as Applicative, Monads, and Arrows. However, finding a good control flow, that correctly manages state and switches behaviors at the right times, still poses a major challenge to developers. An attractive alternative is specifying the behavior instead of programming it, as made possible by the recently developed logic: Temporal Stream Logic (TSL). However, it has not been explored so far how Control Flow Models (CFMs), as synthesized from TSL specifications, can be turned into executable code that is compatible with libraries building on FRP. We bridge this gap, by showing that CFMs are indeed a suitable formalism to be turned into Applicative, Monadic, and Arrowized FRP. We demonstrate the effectiveness of our translations on a real-world kitchen timer application, which we translate to a desktop application using the Arrowized FRP library Yampa, a web application using the Monadic threepenny-gui library, and to hardware using the Applicative hardware description language ClaSH.Comment: arXiv admin note: text overlap with arXiv:1712.0024

Parallelization of dynamic programming recurrences in computational biology

The rapid growth of biosequence databases over the last decade has led to a performance bottleneck in the applications analyzing them. In particular, over the last five years DNA sequencing capacity of next-generation sequencers has been doubling every six months as costs have plummeted. The data produced by these sequencers is overwhelming traditional compute systems. We believe that in the future compute performance, not sequencing, will become the bottleneck in advancing genome science. In this work, we investigate novel computing platforms to accelerate dynamic programming algorithms, which are popular in bioinformatics workloads. We study algorithm-specific hardware architectures that exploit fine-grained parallelism in dynamic programming kernels using field-programmable gate arrays: FPGAs). We advocate a high-level synthesis approach, using the recurrence equation abstraction to represent dynamic programming and polyhedral analysis to exploit parallelism. We suggest a novel technique within the polyhedral model to optimize for throughput by pipelining independent computations on an array. This design technique improves on the state of the art, which builds latency-optimal arrays. We also suggest a method to dynamically switch between a family of designs using FPGA reconfiguration to achieve a significant performance boost. We have used polyhedral methods to parallelize the Nussinov RNA folding algorithm to build a family of accelerators that can trade resources for parallelism and are between 15-130x faster than a modern dual core CPU implementation. A Zuker RNA folding accelerator we built on a single workstation with four Xilinx Virtex 4 FPGAs outperforms 198 3 GHz Intel Core 2 Duo processors. Furthermore, our design running on a single FPGA is an order of magnitude faster than competing implementations on similar-generation FPGAs and graphics processors. Our work is a step toward the goal of automated synthesis of hardware accelerators for dynamic programming algorithms

Security Applications of Formal Language Theory

We present an approach to improving the security of complex, composed systems based on formal language theory, and show how this approach leads to advances in input validation, security modeling, attack surface reduction, and ultimately, software design and programming methodology. We cite examples based on real-world security flaws in common protocols representing different classes of protocol complexity. We also introduce a formalization of an exploit development technique, the parse tree differential attack, made possible by our conception of the role of formal grammars in security. These insights make possible future advances in software auditing techniques applicable to static and dynamic binary analysis, fuzzing, and general reverse-engineering and exploit development. Our work provides a foundation for verifying critical implementation components with considerably less burden to developers than is offered by the current state of the art. It additionally offers a rich basis for further exploration in the areas of offensive analysis and, conversely, automated defense tools and techniques. This report is divided into two parts. In Part I we address the formalisms and their applications; in Part II we discuss the general implications and recommendations for protocol and software design that follow from our formal analysis

Synthesis of a parallel data stream processor from data flow process networks

In this talk, we address the problem of synthesizing Process Network specifications to FPGA execution platforms. The process networks we consider are special cases of Kahn Process Networks. We call them COMPAAN Data Flow Process Networks (CDFPN) because they are provided by a translator called the COMPAAN compiler that automatically translates affine nested loop programs to input-output equivalent (COMPAAN) process network specifications. The objective is to provide an effective and efficient implementation of CDFPNs in an FPGA execution platform, where our implementation is close to a one-to-one mapping of the originating CDFPN. The execution platform emerges as part of the mapping process resulting in a dedicated multi-processor execution platform for a given CDFPN specification.LIACSUBL - phd migration 201