Brain Computer Interfaces and Emotional Involvement: Theory, Research, and Applications

This reprint is dedicated to the study of brain activity related to emotional and attentional involvement as measured by Brain–computer interface (BCI) systems designed for different purposes. A BCI system can translate brain signals (e.g., electric or hemodynamic brain activity indicators) into a command to execute an action in the BCI application (e.g., a wheelchair, the cursor on the screen, a spelling device or a game). These tools have the advantage of having real-time access to the ongoing brain activity of the individual, which can provide insight into the user’s emotional and attentional states by training a classification algorithm to recognize mental states. The success of BCI systems in contemporary neuroscientific research relies on the fact that they allow one to “think outside the lab”. The integration of technological solutions, artificial intelligence and cognitive science allowed and will allow researchers to envision more and more applications for the future. The clinical and everyday uses are described with the aim to invite readers to open their minds to imagine potential further developments

Predictive decoding of neural data

In the last five decades the number of techniques available for non-invasive functional imaging has increased dramatically. Researchers today can choose from a variety of imaging modalities that include EEG, MEG, PET, SPECT, MRI, and fMRI. This doctoral dissertation offers a methodology for the reliable analysis of neural data at different levels of investigation. By using statistical learning algorithms the proposed approach allows single-trial analysis of various neural data by decoding them into variables of interest. Unbiased testing of the decoder on new samples of the data provides a generalization assessment of decoding performance reliability. Through consecutive analysis of the constructed decoder\u27s sensitivity it is possible to identify neural signal components relevant to the task of interest. The proposed methodology accounts for covariance and causality structures present in the signal. This feature makes it more powerful than conventional univariate methods which currently dominate the neuroscience field. Chapter 2 describes the generic approach toward the analysis of neural data using statistical learning algorithms. Chapter 3 presents an analysis of results from four neural data modalities: extracellular recordings, EEG, MEG, and fMRI. These examples demonstrate the ability of the approach to reveal neural data components which cannot be uncovered with conventional methods. A further extension of the methodology, Chapter 4 is used to analyze data from multiple neural data modalities: EEG and fMRI. The reliable mapping of data from one modality into the other provides a better understanding of the underlying neural processes. By allowing the spatial-temporal exploration of neural signals under loose modeling assumptions, it removes potential bias in the analysis of neural data due to otherwise possible forward model misspecification. The proposed methodology has been formalized into a free and open source Python framework for statistical learning based data analysis. This framework, PyMVPA, is described in Chapter 5

Intelligent Biosignal Processing in Wearable and Implantable Sensors

This reprint provides a collection of papers illustrating the state-of-the-art of smart processing of data coming from wearable, implantable or portable sensors. Each paper presents the design, databases used, methodological background, obtained results, and their interpretation for biomedical applications. Revealing examples are brain–machine interfaces for medical rehabilitation, the evaluation of sympathetic nerve activity, a novel automated diagnostic tool based on ECG data to diagnose COVID-19, machine learning-based hypertension risk assessment by means of photoplethysmography and electrocardiography signals, Parkinsonian gait assessment using machine learning tools, thorough analysis of compressive sensing of ECG signals, development of a nanotechnology application for decoding vagus-nerve activity, detection of liver dysfunction using a wearable electronic nose system, prosthetic hand control using surface electromyography, epileptic seizure detection using a CNN, and premature ventricular contraction detection using deep metric learning. Thus, this reprint presents significant clinical applications as well as valuable new research issues, providing current illustrations of this new field of research by addressing the promises, challenges, and hurdles associated with the synergy of biosignal processing and AI through 16 different pertinent studies. Covering a wide range of research and application areas, this book is an excellent resource for researchers, physicians, academics, and PhD or master students working on (bio)signal and image processing, AI, biomaterials, biomechanics, and biotechnology with applications in medicine

Emotion and Stress Recognition Related Sensors and Machine Learning Technologies

This book includes impactful chapters which present scientific concepts, frameworks, architectures and ideas on sensing technologies and machine learning techniques. These are relevant in tackling the following challenges: (i) the field readiness and use of intrusive sensor systems and devices for capturing biosignals, including EEG sensor systems, ECG sensor systems and electrodermal activity sensor systems; (ii) the quality assessment and management of sensor data; (iii) data preprocessing, noise filtering and calibration concepts for biosignals; (iv) the field readiness and use of nonintrusive sensor technologies, including visual sensors, acoustic sensors, vibration sensors and piezoelectric sensors; (v) emotion recognition using mobile phones and smartwatches; (vi) body area sensor networks for emotion and stress studies; (vii) the use of experimental datasets in emotion recognition, including dataset generation principles and concepts, quality insurance and emotion elicitation material and concepts; (viii) machine learning techniques for robust emotion recognition, including graphical models, neural network methods, deep learning methods, statistical learning and multivariate empirical mode decomposition; (ix) subject-independent emotion and stress recognition concepts and systems, including facial expression-based systems, speech-based systems, EEG-based systems, ECG-based systems, electrodermal activity-based systems, multimodal recognition systems and sensor fusion concepts and (x) emotion and stress estimation and forecasting from a nonlinear dynamical system perspective

Linear and nonlinear approaches to unravel dynamics and connectivity in neuronal cultures

[eng] In the present thesis, we propose to explore neuronal circuits at the mesoscale, an approach in which one monitors small populations of few thousand neurons and concentrates in the emergence of collective behavior. In our case, we carried out such an exploration both experimentally and numerically, and by adopting an analysis perspective centered on time series analysis and dynamical systems. Experimentally, we used neuronal cultures and prepared more than 200 of them, which were monitored using fluorescence calcium imaging. By adjusting the experimental conditions, we could set two basic arrangements of neurons, namely homogeneous and aggregated. In the experiments, we carried out two major explorations, namely development and disintegration. In the former we investigated changes in network behavior as it matured; in the latter we applied a drug that reduced neuronal interconnectivity. All the subsequent analyses and modeling along the thesis are based on these experimental data. Numerically, the thesis comprised two aspects. The first one was oriented towards a simulation of neuronal connectivity and dynamics. The second one was oriented towards the development of linear and nonlinear analysis tools to unravel dynamic and connectivity aspects of the measured experimental networks. For the first aspect, we developed a sophisticated software package to simulate single neuronal dynamics using a quadratic integrate–and–fire model with adaptation and depression. This model was plug into a synthetic graph in which the nodes of the network are neurons, and the edges connections. The graph was created using spatial embedding and realistic biology. We carried out hundreds of simulations in which we tuned the density of neurons, their spatial arrangement and the characteristics of the fluorescence signal. As a key result, we observed that homogeneous networks required a substantial number of neurons to fire and exhibit collective dynamics, and that the presence of aggregation significantly reduced the number of required neurons. For the second aspect, data analysis, we analyzed experiments and simulations to tackle three major aspects: network dynamics reconstruction using linear descriptions, dynamics reconstruction using nonlinear descriptors, and the assessment of neuronal connectivity from solely activity data. For the linear study, we analyzed all experiments using the power spectrum density (PSD), and observed that it was sufficiently good to describe the development of the network or its disintegration. PSD also allowed us to distinguish between healthy and unhealthy networks, and revealed dynamical heterogeneities across the network. For the nonlinear study, we used techniques in the context of recurrence plots. We first characterized the embedding dimension m and the time delay δ for each experiment, built the respective recurrence plots, and extracted key information of the dynamics of the system through different descriptors. Experimental results were contrasted with numerical simulations. After analyzing about 400 time series, we concluded that the degree of dynamical complexity in neuronal cultures changes both during development and disintegration. We also observed that the healthier the culture, the higher its dynamic complexity. Finally, for the reconstruction study, we first used numerical simulations to determine the best measure of ‘statistical interdependence’ among any two neurons, and took Generalized Transfer Entropy. We then analyzed the experimental data. We concluded that young cultures have a weak connectivity that increases along maturation. Aggregation increases average connectivity, and more interesting, also the assortativity, i.e. the tendency of highly connected nodes to connect with other highly connected node. In turn, this assortativity may delineates important aspects of the dynamics of the network. Overall, the results show that spatial arrangement and neuronal dynamics are able to shape a very rich repertoire of dynamical states of varying complexity.[cat] L’habilitat dels teixits neuronals de processar i transmetre informació de forma eficient depèn de les propietats dinàmiques intrínseques de les neurones i de la connectivitat entre elles. La present tesi proposa explorar diferents tècniques experimentals i de simulació per analitzar la dinàmica i connectivitat de xarxes neuronals corticals de rata embrionària. Experimentalment, la gravació de l’activitat espontània d’una població de neurones en cultiu, mitjançant una càmera ràpida i tècniques de fluorescència, possibilita el seguiment de forma controlada de l’activitat individual de cada neurona, així com la modificació de la seva connectivitat. En conjunt, aquestes eines permeten estudiar el comportament col.lectiu emergent de la població neuronal. Amb l’objectiu de simular els patrons observats en el laboratori, hem implementat un model mètric aleatori de creixement neuronal per simular la xarxa física de connexions entre neurones, i un model quadràtic d’integració i dispar amb adaptació i depressió per modelar l’ampli espectre de dinàmiques neuronals amb un cost computacional reduït. Hem caracteritzat la dinàmica global i individual de les neurones i l’hem correlacionat amb la seva estructura subjacent mitjançant tècniques lineals i no–lineals de series temporals. L’anàlisi espectral ens ha possibilitat la descripció del desenvolupament i els canvis en connectivitat en els cultius, així com la diferenciació entre cultius sans dels patològics. La reconstrucció de la dinàmica subjacent mitjançant mètodes d’incrustació i l’ús de gràfics de recurrència ens ha permès detectar diferents transicions dinàmiques amb el corresponent guany o pèrdua de la complexitat i riquesa dinàmica del cultiu durant els diferents estudis experimentals. Finalment, a fi de reconstruir la connectivitat interna hem testejat, mitjançant simulacions, diferents quantificadors per mesurar la dependència estadística entre neurona i neurona, seleccionant finalment el mètode de transferència d’entropia gereralitzada. Seguidament, hem procedit a caracteritzar les xarxes amb diferents paràmetres. Malgrat presentar certs tres de xarxes tipus ‘petit món’, els nostres cultius mostren una distribució de grau ‘exponencial’ o ‘esbiaixada’ per, respectivament, cultius joves i madurs. Addicionalment, hem observat que les xarxes homogènies presenten la propietat de disassortativitat, mentre que xarxes amb un creixent nivell d’agregació espaial presenten assortativitat. Aquesta propietat impacta fortament en la transmissió, resistència i sincronització de la xarxa

Novas estratégias de pré-processamento, extração de atributos e classificação em sistemas BCI

Orientador: Romis Ribeiro de Faissol AttuxTese (doutorado) - Universidade Estadual de Campinas, Faculdade de Engenharia Elétrica e de ComputaçãoResumo: As interfaces cérebro-computador (BCIs) visam controlar um dispositivo externo, utilizando diretamente os sinais cerebrais do usuário. Tais sistemas requerem uma série de etapas para processar e extrair atributos relevantes dos sinais observados para interpretar correta e eficientemente as intenções do usuário. Embora o campo tenha se desenvolvido continuamente e algumas dificuldades tenham sido superadas, ainda é necessário aumentar a capacidade de uso, melhorando sua capacidade de classificação e aumentando a confiabilidade de sua resposta. O objetivo clássico da pesquisa de BCI é apoiar a comunicação e o controle para usuários com comunicação prejudicada devido a doenças ou lesões. Aplicações típicas das BCI são a operação de cursores de interface, programas de escrita de texto ou dispositivos externos, como cadeiras de rodas, robôs e diferentes tipos de próteses. O usuário envia informações moduladas para a BCI, realizando tarefas mentais que produzem padrões cerebrais distintos. A BCI adquire sinais do cérebro do usuário e os traduz em comunicação adequada. Esta tese tem como objetivo desenvolver uma comunicação BCI não invasiva mais rápida e confiável baseada no estudo de diferentes técnicas que atuam nas etapas de processamento do sinal, considerando dois aspectos principais, a abordagem de aprendizado de máquina e a redução da complexidade na tarefa de aprendizado dos padrões mentais pelo usuário. A pesquisa foi focada em dois paradigmas de BCI, Imagética Motora (IM) e o potencial relacionado ao evento P300. Algoritmos de processamento de sinais para a detecção de ambos os padrões cerebrais foram aplicados e avaliados. O aspecto do pré-processamento foi a primeira perspectiva estudada, considerando como destacar a resposta dos fenômenos cerebrais, em relação ao ruído e a outras fontes de informação que talvez distorçam o sinal de EEG; isso em si é um passo que influenciará diretamente a resposta dos seguintes blocos de processamento e classificação. A Análise de Componente Independente (ICA) foi usada em conjunto com métodos de seleção de atributos e diferentes classificadores para separar as fontes originais relacionadas à dessincronização produzida pelo fenômeno de IM; esta foi uma tentativa de criar um tipo de filtro espacial que permitisse o sinal ser pré-processado, reduzindo a influência do ruído. Além disso, os resultados dos valores de classificação foram analisados considerando a comparação com métodos padrão de pré-processamento, como o filtro CAR. Os resultados mostraram que é possível separar os componentes relacionados à atividade motora. A proposta da ICA, em média, foi 4\% mais alta em porcentagem de precisão de classificação do que os resultados obtidos usando o CAR, ou quando nenhum filtro foi usado. O papel dos métodos que estudam a conectividade de diferentes áreas do cérebro foi avaliado como a segunda contribuição deste trabalho; Isso permitiu considerar aspectos que contemplam a complexidade da resposta cerebral de um usuário. A área da BCI precisa de uma interpretação mais profunda do que acontece no nível do cérebro em vários dos fenômenos estudados. A técnica utilizada para construir grafos de conectividade funcional foi a correntropia, esta medida foi utilizada para quantificar a similaridade; uma comparação foi feita usando também, as medidas de correlação de Spearman e Pearson. A conectividade funcional relaciona diferentes áreas do cérebro analisando sua atividade cerebral, de modo que o estudo do grafo foi avaliado utilizando três medidas de centralidade, onde a importância de um nó na rede é medida. Também, dois tipos de classificadores foram testados, comparando os resultados no nível de precisão de classificação. Em conclusão, a correntropia pode trazer mais informações para o estudo da conectividade do que o uso da correlação simples, o que trouxe melhorias nos resultados da classificação, especialmente quando ela foi utilizada com o classificador ELM. Finalmente, esta tese demonstra que os BCIs podem fornecer comunicação efetiva em uma aplicação onde a predição da resposta de classificação foi modelada, o que permitiu a otimização dos parâmetros do processamento de sinal realizado usando o filtro espacial xDAWN e um classificador FLDA para o problema do speller P300, buscando a melhor resposta para cada usuário. O modelo de predição utilizado foi Bayesiano e confirmou os resultados obtidos com a operação on-line do sistema, permitindo otimizar os parâmetros tanto do filtro quanto do classificador. Desta forma, foi visto que usando filtros com poucos canais de entrada, o modelo otimizado deu melhores resultados de acurácia de classificação do que os valores inicialmente obtidos ao treinar o filtro xDAWN para os mesmos casos. Os resultados obtidos mostraram que melhorias nos métodos do transdutor BCI, no pré-processamento, extração de características e classificação constituíram a base para alcançar uma comunicação BCI mais rápida e confiável. O avanço nos resultados da classificação foi obtido em todos os casos, comparado às técnicas que têm sido amplamente utilizadas e já mostraram eficácia para esse tipo de problema. No entanto, ainda há aspectos a considerar da resposta dos sujeitos para tipos específicos de paradigmas, lembrando que sua resposta pode variar ao longo de diferentes dias e as implicações reais disso na definição e no uso de diferentes métodos de processamento de sinalAbstract: Brain-computer interfaces (BCIs) aim to control an external device by directly employing user's brain signals. Such systems require a series of steps to process and extract relevant features from the observed signals to correctly and efficiently interpret the user's intentions. Although the field has been continuously developing and some difficulties have been overcome, it is still necessary to increase usability by enhancing their classification capacity and increasing the reliability of their response. The classical objective of BCI research is to support communication and control for users with impaired communication due to illness or injury. Typical BCI applications are the operation of interface cursors, spelling programs or external devices, such as wheelchairs, robots and different types of prostheses. The user sends modulated information to the BCI by engaging in mental tasks that produce distinct brain patterns. The BCI acquires signals from the user¿s brain and translates them into suitable communication. This thesis aims to develop faster and more reliable non-invasive BCI communication based on the study of different techniques that serve in the signal processing stages, considering two principal aspects, the machine learning approach, and the reduction of the complexity in the task of learning the mental patterns by the user. Research was focused on two BCI paradigms, Motor Imagery (MI) and the P300 event related potential (ERP). Signal processing algorithms for the detection of both brain patterns were applied and evaluated. The aspect of the pre-processing was the first perspective studied to consider how to highlight the response of brain phenomena, in relation to noise and other sources of information that maybe distorting the EEG signal; this in itself is a step that will directly influence the response of the following blocks of processing and classification. The Independent Component Analysis (ICA) was used in conjunction with feature selection methods and different classifiers to separate the original sources that are related to the desynchronization produced by MI phenomenon; an attempt was made to create a type of spatial filter that pre-processed the signal, reducing the influence of the noise. Furthermore, some of the classifications values were analyzed considering comparison when used other standard pre-processing methods, as the CAR filter. The results showed that it is possible to separate the components related to motor activity. The ICA proposal on average were 4\% higher in percent of classification accuracy than those obtained using CAR, or when no filter was used. The role of methods that study the connectivity of different brain areas were evaluated as the second contribution of this work; this allowed to consider aspects that contemplate the complexity of the brain response of a user. The area of BCI needs a deeper interpretation of what happens at the brain level in several of the studied phenomena. The technique used to build functional connectivity graphs was correntropy, this quantity was used to measure similarity, a comparison was made using also, the Spearman and Pearson correlation. Functional connectivity relates different brain areas activity, so the study of the graph was evaluated using three measures of centrality of graph, where the importance of a node in the network is measured. In addition, two types of classifiers were tested, comparing the results at the level of classification precision. In conclusion, the correntropy can bring more information for the study of connectivity than the use of the simple correlation, which brought improvements in the classification results especially when it was used with the ELM classifier. Finally, this thesis demonstrates that BCIs can provide effective communication in an application where the prediction of the classification response was modeled, which allowed the optimization of the parameters of the signal processing performed using the xDAWN spatial filter and a FLDA classifier for the problem of the P300 speller, seeking the best response for each user. The prediction model used was Bayesian and confirmed the results obtained with the on-line operation of the system, thus allowing to optimize the parameters of both the filter and the classifier. In this way it was seen that using filters with few inputs the optimized model gave better results of acuraccy classification than the values initially obtained when the training ofthe xDAWN filter was made for the same cases. The obtained results showed that improvements in the BCI transducer, pre-processing, feature extraction and classification methods constituted the basis to achieve faster and more reliable BCI communication. The advance in the classification results were obtained in all cases, compared to techniques that have been widely used and had already shown effectiveness for this type of problemsDoutoradoEngenharia de ComputaçãoDoutora em Engenharia Elétrica153311/2014-2CNP

High Frequency Physiological Data Quality Modelling in the Intensive Care Unit

Intensive care medicine is a resource intense environment in which technical and clinical decision making relies on rapidly assimilating a huge amount of categorical and timeseries physiologic data. These signals are being presented at variable frequencies and of variable quality. Intensive care clinicians rely on high frequency measurements of the patient's physiologic state to assess critical illness and the response to therapies. Physiological waveforms have the potential to reveal details about the patient state in very fine resolution, and can assist, augment, or even automate decision making in intensive care. However, these high frequency time-series physiologic signals pose many challenges for modelling. These signals contain noise, artefacts, and systematic timing errors, all of which can impact the quality and accuracy of models being developed and the reproducibility of results. In this context, the central theme of this thesis is to model the process of data collection in an intensive care environment from a statistical, metrological, and biosignals engineering perspective with the aim of identifying, quantifying, and, where possible, correcting errors introduced by the data collection systems. Three different aspects of physiological measurement were explored in detail, namely measurement of blood oxygenation, measurement of blood pressure, and measurement of time. A literature review of sources of errors and uncertainty in timing systems used in intensive care units was undertaken. A signal alignment algorithm was developed and applied to approximately 34,000 patient-hours of simultaneously collected electroencephalography and physiological waveforms collected at the bedside using two different medical devices

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 - Meeting Abstracts - Antwerp, Belgium. 15–20 July 2017

This work was produced as part of the activities of FAPESP Research,\ud Disseminations and Innovation Center for Neuromathematics (grant\ud 2013/07699-0, S. Paulo Research Foundation). NLK is supported by a\ud FAPESP postdoctoral fellowship (grant 2016/03855-5). ACR is partially\ud supported by a CNPq fellowship (grant 306251/2014-0)