Building a Data Set over 12 Globally Distributed Sites to Support the Development of Agriculture Monitoring Applications with Sentinel-2

Developing better agricultural monitoring capabilities based on Earth Observation data is critical for strengthening food production information and market transparency. The Sentinel-2 mission has the optimal capacity for regional to global agriculture monitoring in terms of resolution (10–20 meter), revisit frequency (five days) and coverage (global). In this context, the European Space Agency launched in 2014 the “Sentinel­2 for Agriculture” project, which aims to prepare the exploitation of Sentinel-2 data for agriculture monitoring through the development of open source processing chains for relevant products. The project generated an unprecedented data set, made of “Sentinel-2 like” time series and in situ data acquired in 2013 over 12 globally distributed sites. Earth Observation time series were mostly built on the SPOT4 (Take 5) data set, which was specifically designed to simulate Sentinel-2. They also included Landsat 8 and RapidEye imagery as complementary data sources. Images were pre-processed to Level 2A and the quality of the resulting time series was assessed. In situ data about cropland, crop type and biophysical variables were shared by site managers, most of them belonging to the “Joint Experiment for Crop Assessment and Monitoring” network. This data set allowed testing and comparing across sites the methodologies that will be at the core of the future “Sentinel­2 for Agriculture” system.Instituto de Clima y AguaFil: Bontemps, Sophie. Université Catholique de Louvain. Earth and Life Institute; BélgicaFil: Arias, Marcela. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Cara, Cosmin. CS Romania S.A.; RumaniaFil: Dedieu, Gérard. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Guzzonato, Eric. CS Systèmes d’Information; FranciaFil: Hagolle, Olivier. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Inglada, Jordi. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Matton, Nicolas. Université Catholique de Louvain. Earth and Life Institute; BélgicaFil: Morin, David. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Popescu, Ramona. CS Romania S.A.; RumaniaFil: Rabaute, Thierry. CS Systèmes d’Information; FranciaFil: Savinaud, Mickael. CS Systèmes d’Information; FranciaFil: Sepulcre, Guadalupe. Université Catholique de Louvain. Earth and Life Institute; BélgicaFil: Valero, Silvia. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Ahmad, Ijaz. Pakistan Space and Upper Atmosphere Research Commission. Space Applications Research Complex. National Agriculture Information Center Directorate; PakistánFil: Bégué, Agnès. Centre de Coopération Internationale en Recherche Agronomique pour le Développerment; FranciaFil: Wu, Bingfang. Chinese Academy of Sciences. Institute of Remote Sensing and Digital Earth; República de ChinaFil: De Abelleyra, Diego. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Clima y Agua; ArgentinaFil: Diarra, Alhousseine. Université Cadi Ayyad. Faculté des Sciences Semlalia; MarruecosFil: Dupuy, Stéphane. Centre de Coopération Internationale en Recherche Agronomique pour le Développerment; FranciaFil: French, Andrew. United States Department of Agriculture. Agricultural Research Service. Arid Land Agricultural Research Center; ArgentinaFil: Akhtar, Ibrar ul Hassan. Pakistan Space and Upper Atmosphere Research Commission. Space Applications Research Complex. National Agriculture Information Center Directorate; PakistánFil: Kussul, Nataliia. National Academy of Sciences of Ukraine. Space Research Institute and State Space Agency of Ukraine; UcraniaFil: Lebourgeois, Valentine. Centre de Coopération Internationale en Recherche Agronomique pour le Développerment; FranciaFil: Le Page, Michel. Université Cadi Ayyad. Faculté des Sciences Semlalia. Laboratoire Mixte International TREMA; Marruecos. Universite de Toulose - Le Mirail. Centre d’Etudes Spatiales de la BIOsphère; FranciaFil: Newby, Terrence. Agricultural Research Council; SudáfricaFil: Savin, Igor. V.V. Dokuchaev Soil Science Institute; RusiaFil: Verón, Santiago Ramón. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Clima y Agua; ArgentinaFil: Koetz, Benjamin. European Space Agency. European Space Research Institute; ItaliaFil: Defourny, Pierre. Université Catholique de Louvain. Earth and Life Institute; Bélgic

Mesoscale mapping of sediment source hotspots for dam sediment management in data-sparse semi-arid catchments

Land degradation and water availability in semi-arid regions are interdependent challenges for management that are influenced by climatic and anthropogenic changes. Erosion and high sediment loads in rivers cause reservoir siltation and decrease storage capacity, which pose risk on water security for citizens, agriculture, and industry. In regions where resources for management are limited, identifying spatial-temporal variability of sediment sources is crucial to decrease siltation. Despite widespread availability of rigorous methods, approaches simplifying spatial and temporal variability of erosion are often inappropriately applied to very data sparse semi-arid regions. In this work, we review existing approaches for mapping erosional hotspots, and provide an example of spatial-temporal mapping approach in two case study regions. The barriers limiting data availability and their effects on erosion mapping methods, their validation, and resulting prioritization of leverage management areas are discussed.BMBF, 02WGR1421A-I, GROW - Verbundprojekt SaWaM: Saisonales Wasserressourcen-Management in Trockenregionen: Praxistransfer regionalisierter globaler Informationen, Teilprojekt 1DFG, 414044773, Open Access Publizieren 2019 - 2020 / Technische Universität Berli

Assessing in-season crop classification performance using satellite data: a test case in Northern Italy

AbstractThis study investigated the feasibility of delivering a crop type map early during the growing season. Landsat 8 OLI multi-temporal data acquired in 2013 season were used to classify seven crop types in Northern Italy. The accuracy achieved with four supervised algorithms, fed with multi-temporal spectral indices (EVI, NDFI, RGRI), was assessed as a function of the crop map delivery time during the season. Overall accuracy (Kappa) exceeds 85% (0.83) starting from mid-July, five months before the end of the season, when maximum accuracy is reached (OA=92%, Kappa=0.91). Among crop types, rice is the most accurately classified, followed by forages, maize and arboriculture, while soybean or double crops can be confused with other classes

The role of biodiversity on pest control ecosystem services in UK apple orchards

In this thesis I assess the ability of biodiversity to provide a functioning pest control ecosystem service to control moth pest species in UK apple orchards. I assess the ability of four types of farm management: organic, Linking Environment and Farming (LEAF), integrated pest management (IPM) and conventional, to measure the ability of pest predation from birds, and the impact that predation has on apple yields. I firstly describe the history and the landscape of the study area, an overview of the methods used and the farming systems that the field study and experiments took place on in Chapter 2. In Chapter 3 I assess farmland biodiversity by monitoring birds and butterflies as indicator species of biodiversity, to understand if farm management impacts biodiversity levels. Biodiversity was highest on organic orchards, which supports the plethora of studies in the literature. Using this information of biodiversity levels on orchard management types, in Chapter 4 I investigate whether this biodiversity supports a pest control service, and to a natural pest control service compares to a synthetic alternate used on non-organic orchards, through using a sentinel prey experiment in field. Pest control services were greater on organic farms, and followed the same patterns as insectivorous bird abundance, species richness, diversity, and density. This chapter also compares moth pest levels to understand the pest pressures across farms, which harbour different pest control strategies and showed that moth pest levels were broadly similar across all farm management types. Finally, in Chapter 5 I compare the farm management options available to famers, both the natural pest control system and the synthetic control system, using economic valuation methods. Although a natural pest control service from birds is present on organic orchards (Chapter 4), the yield per hectare increased significantly on non-organic orchards (expect LEAF) but is found to be in-different to yield value per hectare of organic orchards in variable scenarios. Importantly, the synthetic alternative to a pest control service available from wild insectivorous birds was found to be an insignificant farm management variable that impacts apple yield and yield value on non-organic orchards

Efficacy of multi-season Sentinel-2 imagery for compositional vegetation classification

Vegetation maps are essential tools for the conservation and management of landscapes as they contain essential information for informing conservation decisions. Traditionally, maps have been created using field-based approaches which, due to limitations in costs and time, restrict the size of the area for which they can be created and frequency at which they can be updated. With the increasing availability of satellite sensors providing multi-spectral imagery with high temporal frequency, new methods for efficient and accurate vegetation mapping have been developed. The objective of this study was to investigate to what extent multi-seasonal Sentinel-2 imagery can assist in mapping complex compositional classifications at fine spatial scales. We deliberately chose a challenging case study, namely a visually and structurally homogenous scrub vegetation (known as kwongan) of Western Australia. The classification scheme consists of 24 target classes and a random 60/40 split was used for model building and validation. We compared several multi-temporal (seasonal) feature sets, consisting of numerous combinations of spectral bands, vegetation indices as well as principal component and tasselled cap transformations, as input to four machine learning classifiers (Support Vector Machines; SVM, Nearest Neighbour; NN, Random Forests; RF, and Classification Trees; CT) to separate target classes. The results show that a multi-temporal feature set combining autumn and spring images sufficiently captured the phenological differences between the classes and produced the best results, with SVM (74%) and NN (72%) classifiers returning statistically superior results compared to RF (65%) and CT (50%). The SWIR spectral bands captured during spring, the greenness indices captured during spring and the tasselled cap transformations derived from the autumn image emerged as most informative, which suggests that ecological factors (e.g. shared species, patch dynamics) occurring at a sub-pixel level likely had the biggest impact on class confusion. However, despite these challenges, the results are auspicious and suggest that seasonal Sentinel-2 imagery has the potential to predict compositional vegetation classes with high accuracy. Further work is needed to determine whether these results are replicable in other vegetation types and regions

Investigation into the bio-physical constraints on farmer turn-out-date decisions using remote sensing and meteorological data.

ThesisDoctoral thesisAccepted versionGrass is the most common landcover in Ireland and covers a bigger percentage (52%) of the country than any other in Europe. Grass as fodder is Ireland’s most important crop and is the foundation of its most important indigenous industry, agriculture. Yet knowledge of its distribution, performance and yield is scant. How grass is nationally, on a farm by farm, year by year basis managed is not known. In this thesis the gaps in knowledge about grassland performance across Ireland are presented along with arguments on why these knowledge gaps should be closed. As an example the need for high spatial resolution animal stocking rate data in European temperate grassland systems is shown. The effect of high stocking density on grass management is most apparent early in the growing season, and a 250m scale characterization of early spring vegetation growth from 2003-2012, based on MODIS NDVI time series products, is constructed. The average rate of growth is determined as a simple linear model for each pixel, using only the highest quality data for the period. These decadal spring growth model coefficients, start of season cover and growth rate, are regressed against log of stocking rate (r2 19 = 0.75, p<0.001). This model stocking rate is used to create a map of grassland use intensity in Ireland, which, when tested against an independent set of stocking data, is shown to be successful with an RMSE of 0.13 Livestock Unit/ha for a range of stocking densities from 0.1 to 3.3 Livestock Unit/ha. This model provides the first validated high resolution approach to mapping stocking rates in intensively managed European grassland systems. There is a demonstrated a need for a system to estimate current growing conditions. Using the spring growth model constructed for estimating stocking density a new style of grass growth progress anomaly map in the time-domain was developed. Using the developed satellite dataset 1 and 12 years of ground climate station data in Ireland, NDVI was modelled against time as a proxy for grass growth This model is the reference for estimating current seasonal progress of grass growth against a ten year average. The model is developed to estimate Seasonal Progress Anomalies in the Time domain (SPAT), giving a result in terms of “days behind” and “days ahead” of the norm. SPAT estimates for 2012 and 2013 are compared to ground based estimates from 30 climate stations and have a correlation coefficient of 0.897 and RMSE of 15days. The method can successfully map current grass growth trends compared to the average and present this information to the farmer in simple everyday language. This is understood by the author to be the first validated growth anomaly service, and the first for intensive European grasslands. The decisions on when to turn out cattle (the turn out date (TOD)) from winter housing to spring grazing is an important one on Irish dairy farms which has significant impacts on operating costs on the farm. To examine the relationship of TOD to conditions, the National Farm Survey (NFS) of Ireland database was geocoded and the data on turn out dates from 199 farms across Ireland over five years was used. A fixed effects linear panel data model was employed to explore the association between TOD and conditions, as it allows for unobserved variation between farmers to be ignored in favour of modelling the variance year on year. The environmental variables used in the analysis account for 38% of the variance in the turn out dates on farms nationwide. National seasonal conditions dominate over local variation, and for every week earlier grass grows in spring, farmers gain 3.7 days in grazing season but ignore 3.3 days of growth that could have been used. Every 100mm extra rain in spring means TOD is a day later and every dry day leads to turn out being half a day earlier. A well-drained soil makes TOD 2.5 days earlier compared to a poorly drained soil and TOD gets a day later for every 16km north form the south coast. This work demonstrates that precision agriculture 1 driven by optical and radar satellite data is closer to being a reality in Europe driven by enormous amounts of free imagery from NASA and the ESA Sentinel programs coupled with open source meteorological data and models and new developments in data analytics

Remote sensing of LAI, chlorophyll and leaf nitrogen pools of crop- and grasslands in five European landscapes

Leaf nitrogen and leaf surface area influence the exchange of gases between terrestrial ecosystems and the atmosphere, and they play a significant role in the global cycles of carbon, nitrogen and water. Remote sensing data from satellites can be used to estimate leaf area index (LAI), leaf chlorophyll (CHLl) and leaf nitrogen density (Nl). However, methods are often developed using plot scale data and not verified over extended regions that represent a variety of soil spectral properties and canopy structures. In this paper, field measurements and high spatial resolution (10–20 m) remote sensing images acquired from the HRG and HRVIR sensors aboard the SPOT satellites were used to assess the predictability of LAI, CHLl and Nl. Five spectral vegetation indices (SVIs) were used (the Normalized Difference Vegetation index, the Simple Ratio, the Enhanced Vegetation Index-2, the Green Normalized Difference Vegetation Index, and the green Chlorophyll Index) together with the image-based inverse canopy radiative transfer modelling system, REGFLEC (REGularized canopy reFLECtance). While the SVIs require field data for empirical model building, REGFLEC can be applied without calibration. Field data measured in 93 fields within crop- and grasslands of five European landscapes showed strong vertical CHLl gradient profiles in 20% of fields. This affected the predictability of SVIs and REGFLEC. However, selecting only homogeneous canopies with uniform CHLl distributions as reference data for statistical evaluation, significant (p < 0.05) predictions were achieved for all landscapes, by all methods. The best performance was achieved by REGFLEC for LAI (r2=0.7; rmse = 0.73), canopy chlorophyll content (r2=0.51; rmse = 439 mg m−2) and canopy nitrogen content (r2 = 0.53; rmse = 2.21 g m−2). Predictabilities of SVIs and REGFLEC simulations generally improved when constrained to single land use categories (wheat, maize, barley, grass) across the European landscapes, reflecting sensitivity to canopy structures. Predictability further improved when constrained to local (10 × 10 km2) landscapes, thereby reflecting sensitivity to local environmental conditions. All methods showed different predictabilities for land use categories and landscapes. Combining the best methods, LAI, canopy chlorophyll content (CHLc) and canopy nitrogen content (CHLc) for the five landscapes could be predicted with improved accuracy (LAI rmse = 0.59; CHLc rmse = 346 g m−2; Ncrmse = 1.49 g m−2). Remote sensing-based results showed that the vegetation nitrogen pools of the five agricultural landscapes varied from 0.6 to 4.0 t km−2. Differences in nitrogen pools were attributed to seasonal variations, extents of agricultural area, species variations, and spatial variations in nutrient availability. Information on Nl and total Nc pools within the landscapes is important for the spatial evaluation of nitrogen and carbon cycling processes. The upcoming Sentinel-2 satellite mission will provide new multiple narrow-band data opportunities at high spatio-temporal resolution which are expected to further improve remote sensing predictabilities of LAI, CHLl and Nl.JRC.H.7-Climate Risk Managemen