Solving hard subgraph problems in parallel

This thesis improves the state of the art in exact, practical algorithms for finding subgraphs. We study maximum clique, subgraph isomorphism, and maximum common subgraph problems. These are widely applicable: within computing science, subgraph problems arise in document clustering, computer vision, the design of communication protocols, model checking, compiler code generation, malware detection, cryptography, and robotics; beyond, applications occur in biochemistry, electrical engineering, mathematics, law enforcement, fraud detection, fault diagnosis, manufacturing, and sociology. We therefore consider both the ``pure'' forms of these problems, and variants with labels and other domain-specific constraints. Although subgraph-finding should theoretically be hard, the constraint-based search algorithms we discuss can easily solve real-world instances involving graphs with thousands of vertices, and millions of edges. We therefore ask: is it possible to generate ``really hard'' instances for these problems, and if so, what can we learn? By extending research into combinatorial phase transition phenomena, we develop a better understanding of branching heuristics, as well as highlighting a serious flaw in the design of graph database systems. This thesis also demonstrates how to exploit two of the kinds of parallelism offered by current computer hardware. Bit parallelism allows us to carry out operations on whole sets of vertices in a single instruction---this is largely routine. Thread parallelism, to make use of the multiple cores offered by all modern processors, is more complex. We suggest three desirable performance characteristics that we would like when introducing thread parallelism: lack of risk (parallel cannot be exponentially slower than sequential), scalability (adding more processing cores cannot make runtimes worse), and reproducibility (the same instance on the same hardware will take roughly the same time every time it is run). We then detail the difficulties in guaranteeing these characteristics when using modern algorithmic techniques. Besides ensuring that parallelism cannot make things worse, we also increase the likelihood of it making things better. We compare randomised work stealing to new tailored strategies, and perform experiments to identify the factors contributing to good speedups. We show that whilst load balancing is difficult, the primary factor influencing the results is the interaction between branching heuristics and parallelism. By using parallelism to explicitly offset the commitment made to weak early branching choices, we obtain parallel subgraph solvers which are substantially and consistently better than the best sequential algorithms

Reuse and integration of specification logics: the hybridisation perspective

Hybridisation is a systematic process along which the characteristic features of hybrid logic, both at the syntactic and the semantic levels, are developed on top of an arbitrary logic framed as an institution. It also captures the construction of first-order encodings of such hybridised institutions into theories in first-order logic. The method was originally developed to build suitable logics for the specification of reconfigurable software systems on top of whatever logic is used to describe local requirements of each system’s configuration. Hybridisation has, however, a broader scope, providing a fresh example of yet another development in combining and reusing logics driven by a problem from Computer Science. This paper offers an overview of this method, proposes some new extensions, namely the introduction of full quantification leading to the specification of dynamic modalities, and exemplifies its potential through a didactical application. It is discussed how hybridisation can be successfully used in a formal specification course in which students progress from equational to hybrid specifications in a uniform setting, integrating paradigms, combining data and behaviour, and dealing appropriately with systems evolution and reconfiguration.This work is financed by the ERDF—European Regional Development Fund through the Operational Programme for Competitiveness and Internationalisation—COMPETE 2020 Programme, and by National Funds through the FCT (Portuguese Foundation for Science and Technology) within project POCI-01-0145-FEDER-006961. M. Martins was further supported by project UID/MAT/04106/2013. A. Madeira and R. Neves research was carried out in the context of a post-doc and a Ph.D. grant with references SFRH/BPD/103004/2014 and SFRH/BD/52234/2013, respectively. L.S. Barbosa is also supported by SFRH/BSAB/ 113890/2015

From independent sets and vertex colorings to isotropic spaces and isotropic decompositions: Another bridge between graphs and alternating matrix spaces

In the 1970’s, Lovász built a bridge between graphs and alternating matrix spaces, in the context of perfect matchings (FCT 1979). A similar connection between bipartite graphs and matrix spaces plays a key role in the recent resolutions of the non-commutative rank problem (Garg-Gurvits-Oliveira-Wigderson, FOCS 2016; Ivanyos-Qiao-Subrahmanyam, ITCS 2017). In this paper, we lay the foundation for another bridge between graphs and alternating matrix spaces, in the context of independent sets and vertex colorings. The corresponding structures in alternating matrix spaces are isotropic spaces and isotropic decompositions, both useful structures in group theory and manifold theory. We first show that the maximum independent set problem and the vertex c-coloring problem reduce to the maximum isotropic space problem and the isotropic c-decomposition problem, respectively. Next, we show that several topics and results about independent sets and vertex colorings have natural correspondences for isotropic spaces and decompositions. These include algorithmic problems, such as the maximum independent set problem for bipartite graphs, and exact exponential-time algorithms for the chromatic number, as well as mathematical questions, such as the number of maximal independent sets, and the relation between the maximum degree and the chromatic number. These connections lead to new interactions between graph theory and algebra. Some results have concrete applications to group theory and manifold theory, and we initiate a variant of these structures in the context of quantum information theory. Finally, we propose several open questions for further exploration

AN INVESTIGATION OF LOWER SECONDARY PUPILS' IMAGES OF MATHEMATICS AND MATHEMATICIANS

This thesis reports on a three-part research project in which the images of mathematics and mathematicians held by lower secondary pupils were investigated. A survey tool which asked pupils to draw a picture of a mathematician at work, and which included a Likert-type scale and open-ended writing prompts, was designed and developed for use in an international study of pupils in five countries (n = 476). The results indicate that while some pupils hold stereotypical images in common, all pupils appear to know very little about mathematicians and the work they do. Mathematicians' invisibility to pupils of this age appears to affect their images of mathematics. The tool was refined and utilised again as part of two interventions in the United States: the first attempted to see if images would be affected by a unit in graph theory and discrete mathematics topics (n = 28); the second brought pupils (n = 174) together with a panel of mathematicians. Each intervention had different strengths, but both widened pupils' views of mathematics, enabling them to see it as more than just a study of numbers. In a third small study, professionals in the mathematics field (n = 106) from ten countries were asked in a short survey to comment on Who is a mathematician? and Who may call oneself one? Findings of this portion of the study indicate a lack of a unified vision among members of the mathematics community and some evidence of an elitism which would restrict who may define themselves as a mathematician

On Flows, Paths, Roots, and Zeros

This thesis has two parts; in the first of which we give new results for various network flow problems. (1) We present a novel dual ascent algorithm for min-cost flow and show that an implementation of it is very efficient on certain instance classes. (2) We approach the problem of numerical stability of interior point network flow algorithms by giving a path following method that works with integer arithmetic solely and is thus guaranteed to be free of any nu-merical instabilities. (3) We present a gradient descent approach for the undirected transship-ment problem and its special case, the single source shortest path problem (SSSP). For distrib-uted computation models this yields the first SSSP-algorithm with near-optimal number of communication rounds. The second part deals with fundamental topics from algebraic computation. (1) We give an algorithm for computing the complex roots of a complex polynomial. While achieving a com-parable bit complexity as previous best results, our algorithm is simple and promising to be of practical impact. It uses a test for counting the roots of a polynomial in a region that is based on Pellet's theorem. (2) We extend this test to polynomial systems, i.e., we develop an algorithm that can certify the existence of a k-fold zero of a zero-dimensional polynomial system within a given region. For bivariate systems, we show experimentally that this approach yields signifi-cant improvements when used as inclusion predicate in an elimination method.Im ersten Teil dieser Dissertation präsentieren wir neue Resultate für verschiedene Netzwerkflussprobleme. (1)Wir geben eine neue Duale-Aufstiegsmethode für das Min-Cost-Flow- Problem an und zeigen, dass eine Implementierung dieser Methode sehr effizient auf gewissen Instanzklassen ist. (2)Wir behandeln numerische Stabilität von Innere-Punkte-Methoden fürNetwerkflüsse, indem wir eine solche Methode angeben die mit ganzzahliger Arithmetik arbeitet und daher garantiert frei von numerischen Instabilitäten ist. (3) Wir präsentieren ein Gradienten-Abstiegsverfahren für das ungerichtete Transshipment-Problem, und seinen Spezialfall, das Single-Source-Shortest-Problem (SSSP), die für SSSP in verteilten Rechenmodellen die erste mit nahe-optimaler Anzahl von Kommunikationsrunden ist. Der zweite Teil handelt von fundamentalen Problemen der Computeralgebra. (1) Wir geben einen Algorithmus zum Berechnen der komplexen Nullstellen eines komplexen Polynoms an, der eine vergleichbare Bitkomplexität zu vorherigen besten Resultaten hat, aber vergleichsweise einfach und daher vielversprechend für die Praxis ist. (2)Wir erweitern den darin verwendeten Pellet-Test zum Zählen der Nullstellen eines Polynoms auf Polynomsysteme, sodass wir die Existenz einer k-fachen Nullstelle eines Systems in einer gegebenen Region zertifizieren können. Für bivariate Systeme zeigen wir experimentell, dass eine Integration dieses Ansatzes in eine Eliminationsmethode zu einer signifikanten Verbesserung führt

Hazard elimination using backwards reachability techniques in discrete and hybrid models

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Aeronautics and Astronautics, February 2002.Includes bibliographical references (leaves 173-181).One of the most important steps in hazard analysis is determining whether a particular design can reach a hazardous state and, if it could, how to change the design to ensure that it does not. In most cases, this is done through testing or simulation or even less rigorous processes--none of which provide much confidence for complex systems. Because state spaces for software can be enormous (which is why testing is not an effective way to accomplish the goal), the innovative Hazard Automaton Reduction Algorithm (HARA) involves starting at a hypothetical unsafe state and using backwards reachability techniques to obtain enough information to determine how to design in order to ensure that state cannot be reached. State machine models are very powerful, but also present greater challenges in terms of reachability, including the backwards reachability needed to implement the Hazard Automaton Reduction Algorithm. The key to solving the backwards reachability problem lies in converting the state machine model into a controls state space formulation and creating a state transition matrix. Each successive step backward from the hazardous state then involves only one n by n matrix manipulation. Therefore, only a finite number of matrix manipulations is necessary to determine whether or not a state is reachable from another state, thus providing the same information that could be obtained from a complete backwards reachability graph of the state machine model. Unlike model checking, the computational cost does not increase as greatly with the number of backward states that need to be visited to obtain the information necessary to ensure that the design is safe or to redesign it to be safe. The functionality and optimality of this approach is proved in both discrete and hybrid cases.(cont.) The new approach of the Hazard Automaton Reduction Algorithm combined with backwards reachability controls techniques was demonstrated on a blackbox model of a real aircraft altitude switch. The algorithm is being implemented in a commercial specification language (SpecTRM-RL). SpecTRM-RL is formally extended to include continuous and hybrid models. An analysis of the safety of a medium term conflict detection algorithm (MTCD) for aircraft, that is being developed and tested by Eurocontrol for use in European Air Traffic Control, is performed. Attempts to validate such conflict detection algorithms is currently challenging researchers world wide. Model checking is unsatisfactory in general for this problem because of the lack of a termination guarantee in backwards reachability using model checking. The new state-space controls approach does not encounter this problem.by Natasha Anita Neogi.Ph.D

Visualising software in cyberspace

The problems of maintaining software systems are well documented. The increasing size and complexity of modern software serves only to worsen matters. Software maintainers are typically confronted with very large and very complex software systems, of which they may have little or no prior knowledge. At this stage they will normally have some maintenance task to perform, though possibly little indication of where or how to start. They need to investigate and understand the software to some extent in order to begin maintenance. This understanding process is termed program comprehension. There are various theories on program comprehension, many of which put emphasis on the construction of a mental model of the software within the mind of the maintainor. These same theories hypothesise a number of techniques employed by the maintainer for the creation and revision of this mental model. Software visualisation attempts to provide tool support for generating, supplementing and verifying the maintainer’s mental model. The majority of software visualisations to date have concentrated on producing two dimensional representations and animations of various aspects of a software system. Very little work has been performed previously regarding the issues involved in visualising software within a virtual reality environment. This research represents a significant first step into this exciting field and offers insight into the problems posed by this new media. This thesis provides an identification of the possibilities afforded byU3D graphics for software visualisation and program comprehension. It begins by defining seven key areas of 3D software visualisation, followed by the definition of two terms, visualisation and representation. These two terms provide a conceptual division between a visualisation and the elements of which it is comprised. This division enables improved discussion of the properties of a 3D visualisation and particularly the idenfification of properties that are desirable for a successful visualisation. A number of such desirable properties are suggested for both visualisations and representations, providing support for the design and evaluation of a 3D software visualisation system. Also presented are a number of prototype visualisations, each providing a different approach to the visualisation of a software system. The prototypes help demonstrate the practicalities and feasibility of 3D software visualisation. Evaluation of these prototypes is performed using a variety of techniques, the results of which emphasise the fact that there is substantial potential for the application of 3D graphics and virtual reality to software visualisation