Spatiotemporal Sparse Bayesian Learning with Applications to Compressed Sensing of Multichannel Physiological Signals

Energy consumption is an important issue in continuous wireless telemonitoring of physiological signals. Compressed sensing (CS) is a promising framework to address it, due to its energy-efficient data compression procedure. However, most CS algorithms have difficulty in data recovery due to non-sparsity characteristic of many physiological signals. Block sparse Bayesian learning (BSBL) is an effective approach to recover such signals with satisfactory recovery quality. However, it is time-consuming in recovering multichannel signals, since its computational load almost linearly increases with the number of channels. This work proposes a spatiotemporal sparse Bayesian learning algorithm to recover multichannel signals simultaneously. It not only exploits temporal correlation within each channel signal, but also exploits inter-channel correlation among different channel signals. Furthermore, its computational load is not significantly affected by the number of channels. The proposed algorithm was applied to brain computer interface (BCI) and EEG-based driver's drowsiness estimation. Results showed that the algorithm had both better recovery performance and much higher speed than BSBL. Particularly, the proposed algorithm ensured that the BCI classification and the drowsiness estimation had little degradation even when data were compressed by 80%, making it very suitable for continuous wireless telemonitoring of multichannel signals.Comment: Codes are available at: https://sites.google.com/site/researchbyzhang/stsb

ICA and Sparse ICA for Biomedical Signals

Biomedical signs or bio signals are a wide range of signals obtained from the human body that can be at the cell organ or sub-atomic level Electromyogram refers to electrical activity from muscle sound signals electroencephalogram refers to electrical activity from the encephalon electrocardiogram refers to electrical activity from the heart electroretinogram refers to electrical activity from the eye and so on Monitoring and observing changes in these signals assist physicians whose work is related to this branch of medicine in covering predicting and curing various diseases It can also assist physicians in examining prognosticating and curing numerous condition

Ensemble approach on enhanced compressed noise EEG data signal in wireless body area sensor network

The Wireless Body Area Sensor Network (WBASN) is used for communication among sensor nodes operating on or inside the human body in order to monitor vital body parameters and movements. One of the important applications of WBASN is patients’ healthcare monitoring of chronic diseases such as epileptic seizure. Normally, epileptic seizure data of the electroencephalograph (EEG) is captured and compressed in order to reduce its transmission time. However, at the same time, this contaminates the overall data and lowers classification accuracy. The current work also did not take into consideration that large size of collected EEG data. Consequently, EEG data is a bandwidth intensive. Hence, the main goal of this work is to design a unified compression and classification framework for delivery of EEG data in order to address its large size issue. EEG data is compressed in order to reduce its transmission time. However, at the same time, noise at the receiver side contaminates the overall data and lowers classification accuracy. Another goal is to reconstruct the compressed data and then recognize it. Therefore, a Noise Signal Combination (NSC) technique is proposed for the compression of the transmitted EEG data and enhancement of its classification accuracy at the receiving side in the presence of noise and incomplete data. The proposed framework combines compressive sensing and discrete cosine transform (DCT) in order to reduce the size of transmission data. Moreover, Gaussian noise model of the transmission channel is practically implemented to the framework. At the receiving side, the proposed NSC is designed based on weighted voting using four classification techniques. The accuracy of these techniques namely Artificial Neural Network, Naïve Bayes, k-Nearest Neighbour, and Support Victor Machine classifiers is fed to the proposed NSC. The experimental results showed that the proposed technique exceeds the conventional techniques by achieving the highest accuracy for noiseless and noisy data. Furthermore, the framework performs a significant role in reducing the size of data and classifying both noisy and noiseless data. The key contributions are the unified framework and proposed NSC, which improved accuracy of the noiseless and noisy EGG large data. The results have demonstrated the effectiveness of the proposed framework and provided several credible benefits including simplicity, and accuracy enhancement. Finally, the research improves clinical information about patients who not only suffer from epilepsy, but also neurological disorders, mental or physiological problems

Understanding the Role of Dynamics in Brain Networks: Methods, Theory and Application

The brain is inherently a dynamical system whose networks interact at multiple spatial and temporal scales. Understanding the functional role of these dynamic interactions is a fundamental question in neuroscience. In this research, we approach this question through the development of new methods for characterizing brain dynamics from real data and new theories for linking dynamics to function. We perform our study at two scales: macro (at the level of brain regions) and micro (at the level of individual neurons). In the first part of this dissertation, we develop methods to identify the underlying dynamics at macro-scale that govern brain networks during states of health and disease in humans. First, we establish an optimization framework to actively probe connections in brain networks when the underlying network dynamics are changing over time. Then, we extend this framework to develop a data-driven approach for analyzing neurophysiological recordings without active stimulation, to describe the spatiotemporal structure of neural activity at different timescales. The overall goal is to detect how the dynamics of brain networks may change within and between particular cognitive states. We present the efficacy of this approach in characterizing spatiotemporal motifs of correlated neural activity during the transition from wakefulness to general anesthesia in functional magnetic resonance imaging (fMRI) data. Moreover, we demonstrate how such an approach can be utilized to construct an automatic classifier for detecting different levels of coma in electroencephalogram (EEG) data. In the second part, we study how ongoing function can constraint dynamics at micro-scale in recurrent neural networks, with particular application to sensory systems. Specifically, we develop theoretical conditions in a linear recurrent network in the presence of both disturbance and noise for exact and stable recovery of dynamic sparse stimuli applied to the network. We show how network dynamics can affect the decoding performance in such systems. Moreover, we formulate the problem of efficient encoding of an afferent input and its history in a nonlinear recurrent network. We show that a linear neural network architecture with a thresholding activation function is emergent if we assume that neurons optimize their activity based on a particular cost function. Such an architecture can enable the production of lightweight, history-sensitive encoding schemes

Compressive Sensing with Low-Power Transfer and Accurate Reconstruction of EEG Signals

Tele-monitoring of EEG in WBAN is essential as EEG is the most powerful physiological parameters to diagnose any neurological disorder. Generally, EEG signal needs to record for longer periods which results in a large volume of data leading to huge storage and communication bandwidth requirements in WBAN. Moreover, WBAN sensor nodes are battery operated which consumes lots of energy. The aim of this research is, therefore, low power transmission of EEG signal over WBAN and its accurate reconstruction at the receiver to enable continuous online-monitoring of EEG and real time feedback to the patients from the medical experts. To reduce data rate and consequently reduce power consumption, compressive sensing (CS) may be employed prior to transmission. Nonetheless, for EEG signals, the accuracy of reconstruction of the signal with CS depends on a suitable dictionary in which the signal is sparse. As the EEG signal is not sparse in either time or frequency domain, identifying an appropriate dictionary is paramount. There are a plethora of choices for the dictionary to be used. Wavelet bases are of interest due to the availability of associated systems and methods. However, the attributes of wavelet bases that can lead to good quality of reconstruction are not well understood. For the first time in this study, it is demonstrated that in selecting wavelet dictionaries, the incoherence with the sensing matrix and the number of vanishing moments of the dictionary should be considered at the same time. In this research, a framework is proposed for the selection of an appropriate wavelet dictionary for EEG signal which is used in tandem with sparse binary matrix (SBM) as the sensing matrix and ST-SBL method as the reconstruction algorithm. Beylkin (highly incoherent with SBM and relatively high number of vanishing moments) is identified as the best dictionary to be used amongst the dictionaries are evaluated in this thesis. The power requirements for the proposed framework are also quantified using a power model. The outcomes will assist to realize the computational complexity and online implementation requirements of CS for transmitting EEG in WBAN. The proposed approach facilitates the energy savings budget well into the microwatts range, ensuring a significant savings of battery life and overall system’s power. The study is intended to create a strong base for the use of EEG in the high-accuracy and low-power based biomedical applications in WBAN

Accelerated Proximal Algorithm for Finding the Dantzig Selector and Source Separation Using Dictionary Learning

In most of the applications, signals acquired from different sensors are composite and are corrupted by some noise. In the presence of noise, separation of composite signals into its components without losing information is quite challenging. Separation of signals becomes more difficult when only a few samples of the noisy undersampled composite signals are given. In this paper, we aim to find Dantzig selector with overcomplete dictionaries using Accelerated Proximal Gradient Algorithm (APGA) for recovery and separation of undersampled composite signals. We have successfully diagnosed leukemia disease using our model and compared it with Alternating Direction Method of Multipliers (ADMM). As a test case, we have also recovered Electrocardiogram (ECG) signal with great accuracy from its noisy version using this model along with Proximity Operator based Algorithm (POA) for comparison. With less computational complexity compared with ADMM and POA, APGA has a good clustering capability depicted from the leukemia diagnosis

Source Separation in the Presence of Side-information

The source separation problem involves the separation of unknown signals from their mixture. This problem is relevant in a wide range of applications from audio signal processing, communication, biomedical signal processing and art investigation to name a few. There is a vast literature on this problem which is based on either making strong assumption on the source signals or availability of additional data. This thesis proposes new algorithms for source separation with side information where one observes the linear superposition of two source signals plus two additional signals that are correlated with the mixed ones. The first algorithm is based on two ingredients: first, we learn a Gaussian mixture model (GMM) for the joint distribution of a source signal and the corresponding correlated side information signal; second, we separate the signals using standard computationally efficient conditional mean estimators. This also puts forth new recovery guarantees for this source separation algorithm. In particular, under the assumption that the signals can be perfectly described by a GMM model, we characterize necessary and sufficient conditions for reliable source separation in the asymptotic regime of low-noise as a function of the geometry of the underlying signals and their interaction. It is shown that if the subspaces spanned by the innovation components of the source signals with respect to the side information signals have zero intersection, provided that we observe a certain number of linear measurements from the mixture, then we can reliably separate the sources; otherwise we cannot. The second algorithms is based on deep learning where we introduce a novel self-supervised algorithm for the source separation problem. Source separation is intrinsically unsupervised and the lack of training data makes it a difficult task for artificial intelligence to solve. The proposed framework takes advantage of the available data and delivers near perfect separation results in real data scenarios. Our proposed frameworks – which provide new ways to incorporate side information to aid the solution of the source separation problem – are also employed in a real-world art investigation application involving the separation of mixtures of X-Ray images. The simulation results showcase the superiority of our algorithm against other state-of-the-art algorithms

Deep Neural Oracles for Short-Window Optimized Compressed Sensing of Biosignals

The recovery of sparse signals given their linear mapping on lower-dimensional spaces can be partitioned into a support estimation phase and a coefficient estimation phase. We propose to estimate the support with an oracle based on a deep neural network trained jointly with the linear mapping at the encoder. The divination of the oracle is then used to estimate the coefficients by pseudo-inversion. This architecture allows the definition of an encoding-decoding scheme with state-of-the-art recovery capabilities when applied to biological signals such as ECG and EEG, thus allowing extremely low-complex encoders. As an additional feature, oracle-based recovery is able to self-assess, by indicating with remarkable accuracy chunks of signals that may have been reconstructed with a non-satisfactory quality. This self-assessment capability is unique in the CS literature and paves the way for further improvements depending on the requirements of the specific application. As an example, our scheme is able to satisfyingly compress by a factor of 2.67 an ECG or EEG signal with a complexity equivalent to only 24 signed sums per processed sample

Wireless body area sensor networks signal processing and communication framework: Survey on sensing, communication technologies, delivery and feedback

Problem statement: The Wireless Body Area Sensor Networks (WBASNs) is a wireless network used for communication among sensor nodes operating on or inside the human body in order to monitor vital body parameters and movements.This study surveys the state-of-the-art on Wireless Body Area Networks, discussing the major components of research in this area including physiological sensing and preprocessing, WBASNs communication techniques and data fusion for gathering data from sensors.In addition, data analysis and feedback will be presented including feature extraction, detection and classification of human related phenomena.Approach: Comparative studies of the technologies and techniques used in such systems will be provided in this study, using qualitative comparisons and use case analysis to give insight on potential uses for different techniques.Results and Conclusion: Wireless Sensor Networks (WSNs) technologies are considered as one of the key of the research areas in computer science and healthcare application industries.Sensor supply chain and communication technologies used within the system and power consumption therein, depend largely on the use case and the characteristics of the application.Authors conclude that Life-saving applications and thorough studies and tests should be conducted before WBANs can be widely applied to humans, particularly to address the challenges related to robust techniques for detection and classification to increase the accuracy and hence the confidence of applying such techniques without physician intervention