Robust semi-automated path extraction for visualising stenosis of the coronary arteries

Computed tomography angiography (CTA) is useful for diagnosing and planning treatment of heart disease. However, contrast agent in surrounding structures (such as the aorta and left ventricle) makes 3-D visualisation of the coronary arteries difficult. This paper presents a composite method employing segmentation and volume rendering to overcome this issue. A key contribution is a novel Fast Marching minimal path cost function for vessel centreline extraction. The resultant centreline is used to compute a measure of vessel lumen, which indicates the degree of stenosis (narrowing of a vessel). Two volume visualisation techniques are presented which utilise the segmented arteries and lumen measure. The system is evaluated and demonstrated using synthetic and clinically obtained datasets

VolumeEVM: A new surface/volume integrated model

Volume visualization is a very active research area in the field of scien-tific visualization. The Extreme Vertices Model (EVM) has proven to be a complete intermediate model to visualize and manipulate volume data using a surface rendering approach. However, the ability to integrate the advantages of surface rendering approach with the superiority in visual exploration of the volume rendering would actually produce a very complete visualization and edition system for volume data. Therefore, we decided to define an enhanced EVM-based model which incorporates the volumetric information required to achieved a nearly direct volume visualization technique. Thus, VolumeEVM was designed maintaining the same EVM-based data structure plus a sorted list of density values corresponding to the EVM-based VoIs interior voxels. A function which relates interior voxels of the EVM with the set of densities was mandatory to be defined. This report presents the definition of this new surface/volume integrated model based on the well known EVM encoding and propose implementations of the main software-based direct volume rendering techniques through the proposed model.Postprint (published version

Moving-boundary problems solved by adaptive radial basis functions

The objective of this paper is to present an alternative approach to the conventional level set methods for solving two-dimensional moving-boundary problems known as the passive transport. Moving boundaries are associated with time-dependent problems and the position of the boundaries need to be determined as a function of time and space. The level set method has become an attractive design tool for tracking, modeling and simulating the motion of free boundaries in fluid mechanics, combustion, computer animation and image processing. Recent research on the numerical method has focused on the idea of using a meshless methodology for the numerical solution of partial differential equations. In the present approach, the moving interface is captured by the level set method at all time with the zero contour of a smooth function known as the level set function. A new approach is used to solve a convective transport equation for advancing the level set function in time. This new approach is based on the asymmetric meshless collocation method and the adaptive greedy algorithm for trial subspaces selection. Numerical simulations are performed to verify the accuracy and stability of the new numerical scheme which is then applied to simulate a bubble that is moving, stretching and circulating in an ambient flow to demonstrate the performance of the new meshless approach. (C) 2010 Elsevier Ltd. All rights reserved

PyFrac: A planar 3D hydraulic fracture simulator

Fluid driven fractures propagate in the upper earth crust either naturally or in response to engineered fluid injections. The quantitative prediction of their evolution is critical in order to better understand their dynamics as well as to optimize their creation. We present a Python implementation of an open-source hydraulic fracture propagation simulator based on the implicit level set algorithm originally developed by Peirce & Detournay (2008) -- "An implicit level set method for modeling hydraulically driven fractures". Comp. Meth. Appl. Mech. Engng, (33-40):2858--2885. This algorithm couples a finite discretization of the fracture with the use of the near tip asymptotic solutions of a steadily propagating semi-infinite hydraulic fracture. This allows to resolve the multi-scale processes governing hydraulic fracture growth accurately, even with relatively coarse meshes. We present an overview of the mathematical formulation, the numerical scheme and the details of our implementation. A series of problems including a radial hydraulic fracture verification benchmark, the propagation of a height contained hydraulic fracture, the lateral spreading of a magmatic dyke and the handling of fracture closure are presented to demonstrate the capabilities, accuracy and robustness of the implemented algorithm

Path Planning for Mobile Robot Navigation using Voronoi Diagram and Fast Marching

For navigation in complex environments, a robot need s to reach a compromise between the need for having efficient and optimized trajectories and t he need for reacting to unexpected events. This paper presents a new sensor-based Path Planner w hich results in a fast local or global motion planning able to incorporate the new obstacle information. In the first step the safest areas in the environment are extracted by means of a Vorono i Diagram. In the second step the Fast Marching Method is applied to the Voronoi extracted a reas in order to obtain the path. The method combines map-based and sensor-based planning o perations to provide a reliable motion plan, while it operates at the sensor frequency. The m ain characteristics are speed and reliability, since the map dimensions are reduced to an almost uni dimensional map and this map represents the safest areas in the environment for moving the robot. In addition, the Voronoi Diagram can be calculated in open areas, and with all kind of shaped obstacles, which allows to apply the proposed planning method in complex environments wher e other methods of planning based on Voronoi do not work.This work has been supported by the CAM Project S2009/DPI-1559/ROBOCITY2030 I