Industry–Academia Research Collaboration and Knowledge Co-creation: Patterns and Anti-patterns

Increasing the impact of software engineering research in the software industry and the society at large has long been a concern of high priority for the software engineering community. The problem of two cultures, research conducted in a vacuum (disconnected from the real world), or misaligned time horizons are just some of the many complex challenges standing in the way of successful industry–academia collaborations. This article reports on the experience of research collaboration and knowledge co-creation between industry and academia in software engineering as a way to bridge the research–practice collaboration gap. Our experience spans 14 years of collaboration between researchers in software engineering and the European and Norwegian software and IT industry. Using the participant observation and interview methods, we have collected and afterwards analyzed an extensive record of qualitative data. Drawing upon the findings made and the experience gained, we provide a set of 14 patterns and 14 anti-patterns for industry–academia collaborations, aimed to support other researchers and practitioners in establishing and running research collaboration projects in software engineering.publishedVersio

A computational neuromuscular model of the human upper airway with application to the study of obstructive sleep apnoea

Includes bibliographical references.Numerous challenges are faced in investigations aimed at developing a better understanding of the pathophysiology of obstructive sleep apnoea. The anatomy of the tongue and other upper airway tissues, and the ability to model their behaviour, is central to such investigations. In this thesis, details of the construction and development of a three-dimensional finite element model of soft tissues of the human upper airway, as well as a simplified fluid model of the airway, are provided. The anatomical data was obtained from the Visible Human Project, and its underlying micro-histological data describing tongue musculature were also extracted from the same source and incorporated into the model. An overview of the mathematical models used to describe tissue behaviour, both at a macro- and microscopic level, is given. Hyperelastic constitutive models were used to describe the material behaviour, and material incompressibility was accounted for. An active Hill three-element muscle model was used to represent the muscular tissue of the tongue. The neural stimulus for each muscle group to a priori unknown external forces was determined through the use of a genetic algorithm-based neural control model. The fundamental behaviour of the tongue under gravitational and breathing-induced loading is investigated. The response of the various muscles of the tongue to the complex loading developed during breathing is determined, with a particular focus being placed to that of the genioglossus. It is demonstrated that, when a time-dependent loading is applied to the tongue, the neural model is able to control the position of the tongue and produce a physiologically realistic response for the genioglossus. A comparison is then made to the response determined under quasi-static conditions using the pressure distribution extracted from computational fluid-dynamics results. An analytical model describing the time-dependent response of the components of the tongue musculature most active during oral breathing is developed and validated. It is then modified to simulate the activity of the tongue during sleep and under conditions relating to various possible neural and physiological pathologies. The retroglossal movement of the tongue resulting from the pathologies is quantified and their role in the potential to induce airway collapse is discussed

Heart Diseases Diagnosis Using Artificial Neural Networks

Information technology has virtually altered every aspect of human life in the present era. The application of informatics in the health sector is rapidly gaining prominence and the benefits of this innovative paradigm are being realized across the globe. This evolution produced large number of patients’ data that can be employed by computer technologies and machine learning techniques, and turned into useful information and knowledge. This data can be used to develop expert systems to help in diagnosing some life-threating diseases such as heart diseases, with less cost, processing time and improved diagnosis accuracy. Even though, modern medicine is generating huge amount of data every day, little has been done to use this available data to solve challenges faced in the successful diagnosis of heart diseases. Highlighting the need for more research into the usage of robust data mining techniques to help health care professionals in the diagnosis of heart diseases and other debilitating disease conditions. Based on the foregoing, this thesis aims to develop a health informatics system for the classification of heart diseases using data mining techniques focusing on Radial Basis functions and emerging Neural Networks approach. The presented research involves three development stages; firstly, the development of a preliminary classification system for Coronary Artery Disease (CAD) using Radial Basis Function (RBF) neural networks. The research then deploys the deep learning approach to detect three different types of heart diseases i.e. Sleep Apnea, Arrhythmias and CAD by designing two novel classification systems; the first adopt a novel deep neural network method (with Rectified Linear unit activation) design as the second approach in this thesis and the other implements a novel multilayer kernel machine to mimic the behaviour of deep learning as the third approach. Additionally, this thesis uses a dataset obtained from patients, and employs normalization and feature extraction means to explore it in a unique way that facilitates its usage for training and validating different classification methods. This unique dataset is useful to researchers and practitioners working in heart disease treatment and diagnosis. The findings from the study reveal that the proposed models have high classification performance that is comparable, or perhaps exceed in some cases, the existing automated and manual methods of heart disease diagnosis. Besides, the proposed deep-learning models provide better performance when applied on large data sets (e.g., in the case of Sleep Apnea), with reasonable performance with smaller data sets. The proposed system for clinical diagnoses of heart diseases, contributes to the accurate detection of such disease, and could serve as an important tool in the area of clinic support system. The outcome of this study in form of implementation tool can be used by cardiologists to help them make more consistent diagnosis of heart diseases

Sleep homeostasis in the European jackdaw (<i>Coloeus monedula</i>):Sleep deprivation increases NREM sleep time and EEG power while reducing hemispheric asymmetry

Introduction: Sleep is a wide-spread phenomenon that is thought to occur in all animals. Yet, the function of it remains an enigma. Conducting sleep experiments in different species may shed light on the evolution and functions of sleep. Therefore, we studied sleep architecture and sleep homeostatic responses to sleep deprivation in the European jackdaw (Coloeus monedula).Methods: A total of nine young adult birds were implanted with epidural electrodes and equipped with miniature data loggers for recording movement activity (accelerometery) and electroencephalogram (EEG). Individually-housed jackdaws were recorded under controlled conditions with a 12:12-h light-dark cycle.Results: During baseline, the birds spent on average 48.5% of the time asleep (39.8% non-rapid eye movement (NREM) sleep and 8.7% rapid eye movement (REM) sleep). Most of the sleep occurred during the dark phase (dark phase: 75.3% NREM sleep and 17.2% REM sleep; light phase 4.3% NREM sleep and 0.1% REM sleep). After sleep deprivation of 4 and 8 h starting at lights off, the birds showed a dose-dependent increase in NREM sleep time. Also, NREM sleep EEG power in the 1.5–3 Hz frequency range, which is considered to be a marker of sleep homeostasis in mammals, was significantly increased for 1-2 h after both 4SD and 8SD. While there was little true unihemispheric sleep in the Jackdaws, there was a certain degree of hemispheric asymmetry in NREM sleep EEG power during baseline, which reduced after sleep deprivation in a dose-dependent manner.Conclusion: In conclusion, jackdaws display homeostatic regulation of NREM sleep and sleep pressure promotes coherence in EEG power

Diagnosis of the sleep apnea-hypopnea syndrome : a comprehensive approach through an intelligent system to support medical decision

[Abstract] This doctoral thesis carries out the development of an intelligent system to support medical decision in the diagnosis of the Sleep Apnea-Hypopnea Syndrome (SAHS). SAHS is the most common disorder within those affecting sleep. The estimates of the disease prevalence range from 3% to 7%. Diagnosis of SAHS requires of a polysomnographic test (PSG) to be done in the Sleep Unit of a medical center. Manual scoring of the resulting recording entails too much effort and time to the medical specialists and as a consequence it implies a high economic cost. In the developed system, automatic analysis of the PSG is accomplished which follows a comprehensive perspective. Firstly an analysis of the neurophysiological signals related to the sleep function is carried out in order to obtain the hypnogram. Then, an analysis is performed over the respiratory signals which have to be subsequently interpreted in the context of the remaining signals included in the PSG. In order to carry out such a task, the developed system is supported by the use of artificial intelligence techniques, specially focusing on the use of reasoning mechanisms capable of handling data imprecision. Ultimately, it is the aim of the proposed system to improve the diagnostic procedure and help physicians in the diagnosis of SAHS.[Resumen] Esta tesis aborda el desarrollo de un sistema inteligente de apoyo a la decisión clínica para el diagnóstico del Síndrome de Apneas-Hipopneas del Sueño (SAHS). El SAHS es el trastorno más común de aquellos que afectan al sueño. Afecta a un rango del 3% al 7% de la población con consecuencias severas sobre la salud. El diagnóstico requiere la realización de un análisis polisomnográfico (PSG) en una Unidad del Sueño de un centro hospitalario. El análisis manual de dicha prueba resulta muy costoso en tiempo y esfuerzo para el médico especialista, y como consecuencia en un elevado coste económico. El sistema desarrollado lleva a cabo el análisis automático del PSG desde una perspectiva integral. A tal efecto, primero se realiza un análisis de las señales neurofisiológicas vinculadas al sueño para obtener el hipnograma, y seguidamente, se lleva a cabo un análisis neumológico de las señales respiratorias interpretándolas en el contexto que marcan las demás señales del PSG. Para lleva a cabo dicha tarea el sistema se apoya en el uso de distintas técnicas de inteligencia artificial, con especial atención al uso mecanismos de razonamiento con soporte a la imprecisión. El principal objetivo del sistema propuesto es la mejora del procedimiento diagnóstico y ayudar a los médicos en diagnóstico del SAHS.[Resumo] Esta tese aborda o desenvolvemento dun sistema intelixente de apoio á decisión clínica para o diagnóstico do Síndrome de Apneas-Hipopneas do Sono (SAHS). O SAHS é o trastorno máis común daqueles que afectan ao sono. Afecta a un rango do 3% ao 7% da poboación con consecuencias severas sobre a saúde. O diagnóstico pasa pola realización dunha análise polisomnográfica (PSG) nunha Unidade do Sono dun centro hospitalario. A análise manual da devandita proba resulta moi custosa en tempo e esforzo para o médico especialista, e como consecuencia nun elevado custo económico. O sistema desenvolvido leva a cabo a análise automática do PSG dende unha perspectiva integral. A tal efecto, primeiro realizase unha análise dos sinais neurofisiolóxicos vinculados ao sono para obter o hipnograma, e seguidamente, lévase a cabo unha análise neumolóxica dos sinais respiratorios interpretándoos no contexto que marcan os demais sinais do PSG. Para leva a cabo esta tarefa o sistema apoiarase no uso de distintas técnicas de intelixencia artificial, con especial atención a mecanismos de razoamento con soporte para a imprecisión. O principal obxectivo do sistema proposto é a mellora do procedemento diagnóstico e axudar aos médicos no diagnóstico do SAHS

A Comprehensive Survey on Particle Swarm Optimization Algorithm and Its Applications

Particle swarm optimization (PSO) is a heuristic global optimization method, proposed originally by Kennedy and Eberhart in 1995. It is now one of the most commonly used optimization techniques. This survey presented a comprehensive investigation of PSO. On one hand, we provided advances with PSO, including its modifications (including quantum-behaved PSO, bare-bones PSO, chaotic PSO, and fuzzy PSO), population topology (as fully connected, von Neumann, ring, star, random, etc.), hybridization (with genetic algorithm, simulated annealing, Tabu search, artificial immune system, ant colony algorithm, artificial bee colony, differential evolution, harmonic search, and biogeography-based optimization), extensions (to multiobjective, constrained, discrete, and binary optimization), theoretical analysis (parameter selection and tuning, and convergence analysis), and parallel implementation (in multicore, multiprocessor, GPU, and cloud computing forms). On the other hand, we offered a survey on applications of PSO to the following eight fields: electrical and electronic engineering, automation control systems, communication theory, operations research, mechanical engineering, fuel and energy, medicine, chemistry, and biology. It is hoped that this survey would be beneficial for the researchers studying PSO algorithms

Distributed Computing and Monitoring Technologies for Older Patients

This book summarizes various approaches for the automatic detection of health threats to older patients at home living alone. The text begins by briefly describing those who would most benefit from healthcare supervision. The book then summarizes possible scenarios for monitoring an older patient at home, deriving the common functional requirements for monitoring technology. Next, the work identifies the state of the art of technological monitoring approaches that are practically applicable to geriatric patients. A survey is presented on a range of such interdisciplinary fields as smart homes, telemonitoring, ambient intelligence, ambient assisted living, gerontechnology, and aging-in-place technology. The book discusses relevant experimental studies, highlighting the application of sensor fusion, signal processing and machine learning techniques. Finally, the text discusses future challenges, offering a number of suggestions for further research directions

Hidden Markov Models

Hidden Markov Models (HMMs), although known for decades, have made a big career nowadays and are still in state of development. This book presents theoretical issues and a variety of HMMs applications in speech recognition and synthesis, medicine, neurosciences, computational biology, bioinformatics, seismology, environment protection and engineering. I hope that the reader will find this book useful and helpful for their own research

Algorithms for automated diagnosis of cardiovascular diseases based on ECG data: A comprehensive systematic review

The prevalence of cardiovascular diseases is increasing around the world. However, the technology is evolving and can be monitored with low-cost sensors anywhere at any time. This subject is being researched, and different methods can automatically identify these diseases, helping patients and healthcare professionals with the treatments. This paper presents a systematic review of disease identification, classification, and recognition with ECG sensors. The review was focused on studies published between 2017 and 2022 in different scientific databases, including PubMed Central, Springer, Elsevier, Multidisciplinary Digital Publishing Institute (MDPI), IEEE Xplore, and Frontiers. It results in the quantitative and qualitative analysis of 103 scientific papers. The study demonstrated that different datasets are available online with data related to various diseases. Several ML/DP-based models were identified in the research, where Convolutional Neural Network and Support Vector Machine were the most applied algorithms. This review can allow us to identify the techniques that can be used in a system that promotes the patient’s autonomy.N/