Detection of irrigation inhomogeneities in an olive grove using the NDRE vegetation index obtained from UAV images

We have developed a simple photogrammetric method to identify heterogeneous areas of irrigated olive groves and vineyard crops using a commercial multispectral camera mounted on an unmanned aerial vehicle (UAV). By comparing NDVI, GNDVI, SAVI, and NDRE vegetation indices, we find that the latter shows irrigation irregularities in an olive grove not discernible with the other indices. This may render the NDRE as particularly useful to identify growth inhomogeneities in crops. Given the fact that few satellite detectors are sensible in the red-edge (RE) band and none with the spatial resolution offered by UAVs, this finding has the potential of turning UAVs into a local farmer’s favourite aid tool.Peer ReviewedPostprint (published version

Application of UAV based high-resolution remote sensing for crop monitoring

Advances in technologies could offer enormous potential for crop monitoring applications, allowing the real-time acquisition of various environmental data. Technology such as high spatio-temporal imagery of unmanned aerial vehicles (UAV’s) can be widely used in crop monitoring applications. These technologies are expected to revolutionize the global agriculture practices, by enabling decision-making during the crop cycle days. Such results allow the effective practice of agricultural inputs, aiding precision agriculture pillars, i.e., applying the right practice in the right place, with the right amount and time. However, the actual exploitation of UAV’s has not been much strong in smart farming, mainly due to the challenges faced during selecting and deploying relevant technologies, including data acquisition and processing methods. The major problem is that there is still no consistent workflow for the use of UAV’s in such areas, as this mechanization is relatively new. In this article, the latest applications of UAV’s for crop monitoring are reviewed. It covers the most common applications, the types of UAV’s used and then we focused on data acquisition methods and technologies, employing the benefit and drawbacks of each. It also indicates the most popular image processing methods and summarizes the potential application in agricultural operations. 

High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms

Crop yields need to be improved in a sustainable manner to meet the expected worldwide increase in population over the coming decades as well as the effects of anticipated climate change. Recently, genomics-assisted breeding has become a popular approach to food security; in this regard, the crop breeding community must better link the relationships between the phenotype and the genotype. While high-throughput genotyping is feasible at a low cost, highthroughput crop phenotyping methods and data analytical capacities need to be improved. High-throughput phenotyping offers a powerful way to assess particular phenotypes in large-scale experiments, using high-tech sensors, advanced robotics, and imageprocessing systems to monitor and quantify plants in breeding nurseries and field experiments at multiple scales. In addition, new bioinformatics platforms are able to embrace large-scale, multidimensional phenotypic datasets. Through the combined analysis of phenotyping and genotyping data, environmental responses and gene functions can now be dissected at unprecedented resolution. This will aid in finding solutions to currently limited and incremental improvements in crop yields

High-throughput phenotyping of plant leaf morphological, physiological, and biochemical traits on multiple scales using optical sensing

Acquisition of plant phenotypic information facilitates plant breeding, sheds light on gene action, and can be applied to optimize the quality of agricultural and forestry products. Because leaves often show the fastest responses to external environmental stimuli, leaf phenotypic traits are indicators of plant growth, health, and stress levels. Combination of new imaging sensors, image processing, and data analytics permits measurement over the full life span of plants at high temporal resolution and at several organizational levels from organs to individual plants to field populations of plants. We review the optical sensors and associated data analytics used for measuring morphological, physiological, and biochemical traits of plant leaves on multiple scales. We summarize the characteristics, advantages and limitations of optical sensing and data-processing methods applied in various plant phenotyping scenarios. Finally, we discuss the future prospects of plant leaf phenotyping research. This review aims to help researchers choose appropriate optical sensors and data processing methods to acquire plant leaf phenotypes rapidly, accurately, and cost-effectively

Use of an Active Canopy Sensor Mounted on an Unmanned Aerial Vehicle to Monitor the Growth and Nitrogen Status of Winter Wheat

Using remote sensing to rapidly acquire large-area crop growth information (e.g., shoot biomass, nitrogen status) is an urgent demand for modern crop production; unmanned aerial vehicle (UAV) acts as an effective monitoring platform. In order to improve the practicability and efficiency of UAV based monitoring technique, four field experiments involving different nitrogen (N) rates (0–360 kg N ha−1 ) and seven winter wheat (Triticum aestivum L.) varieties were conducted at different eco-sites (Sihong, Rugao, and Xinghua) during 2015–2019. A multispectral active canopy sensor (RapidSCAN CS-45; Holland Scientific Inc., Lincoln, NE, USA) mounted on a multirotor UAV platform was used to collect the canopy spectral reflectance data of winter wheat at key growth stages, three growth parameters (leaf area index (LAI), leaf dry matter (LDM), plant dry matter (PDM)) and three N indicators (leaf N accumulation (LNA), plant N accumulation (PNA) and N nutrition index (NNI)) were measured synchronously. The quantitative linear relationships between spectral data and six growth indices were systematically analyzed. For monitoring growth and N nutrition status at Feekes stages 6.0–10.0, 10.3–11.1 or entire growth stages, red edge ratio vegetation index (RERVI), red edge chlorophyll index (CIRE) and difference vegetation index (DVI) performed the best among the red edge band-based and red-based vegetation indices, respectively. Across all growth stages, DVI was highly correlated with LAI (R2 = 0.78), LDM (R2 = 0.61), PDM (R2 = 0.63), LNA (R2 = 0.65) and PNA (R2 = 0.73), whereas the relationships between RERVI (R2 = 0.62), CIRE (R2 = 0.62) and NNI had high coefficients of determination. The developed models performed better in monitoring growth indices and N status at Feekes stages 10.3–11.1 than Feekes stages 6.0–10.0. To sum it up, the UAV-mounted active sensor system is able to rapidly monitor the growth and N nutrition status of winter wheat and can be deployed for UAV-based remote-sensing of crops

Evaluation of the UAV-Based Multispectral Imagery and Its Application for Crop Intra-Field Nitrogen Monitoring and Yield Prediction in Ontario

Unmanned Aerial Vehicle (UAV) has the capability of acquiring high spatial and temporal resolution images. This new technology fills the data gap between satellite and ground survey in agriculture. In addition, UAV-based crop monitoring and methods are new challenge of remote sensing application in agriculture. First, in my thesis the potential of UAV-based imagery was investigated to monitor spatial and temporal variation of crop status in comparison with RapidEye. The correlation between red-edge indices and LAI and biomass are higher for UAV-based imagery than that of RapidEye. Secondly, the nitrogen weight and yield in wheat was predicted using the UAV-based imagery. The intra-field nitrogen prediction model performs well at wheat early growth stage. Additionally, the best data collection time for yield prediction is at the end of booting stage. The results demonstrate the UAV-based data could be an alternative effective and affordable approach for farmers on intra-field management

Principal variable selection to explain grain yield variation in winter wheat from features extracted from UAV imagery

Background: Automated phenotyping technologies are continually advancing the breeding process. However, collecting various secondary traits throughout the growing season and processing massive amounts of data still take great efforts and time. Selecting a minimum number of secondary traits that have the maximum predictive power has the potential to reduce phenotyping efforts. The objective of this study was to select principal features extracted from UAV imagery and critical growth stages that contributed the most in explaining winter wheat grain yield. Five dates of multispectral images and seven dates of RGB images were collected by a UAV system during the spring growing season in 2018. Two classes of features (variables), totaling to 172 variables, were extracted for each plot from the vegetation index and plant height maps, including pixel statistics and dynamic growth rates. A parametric algorithm, LASSO regression (the least angle and shrinkage selection operator), and a non-parametric algorithm, random forest, were applied for variable selection. The regression coefficients estimated by LASSO and the permutation importance scores provided by random forest were used to determine the ten most important variables influencing grain yield from each algorithm. Results: Both selection algorithms assigned the highest importance score to the variables related with plant height around the grain filling stage. Some vegetation indices related variables were also selected by the algorithms mainly at earlier to mid growth stages and during the senescence. Compared with the yield prediction using all 172 variables derived from measured phenotypes, using the selected variables performed comparable or even better. We also noticed that the prediction accuracy on the adapted NE lines (r = 0.58–0.81) was higher than the other lines (r = 0.21–0.59) included in this study with different genetic backgrounds. Conclusions: With the ultra-high resolution plot imagery obtained by the UAS-based phenotyping we are now able to derive more features, such as the variation of plant height or vegetation indices within a plot other than just an averaged number, that are potentially very useful for the breeding purpose. However, too many features or variables can be derived in this way. The promising results from this study suggests that the selected set from those variables can have comparable prediction accuracies on the grain yield prediction than the full set of them but possibly resulting in a better allocation of efforts and resources on phenotypic data collection and processing

Investigating the Potential of a Newly Developed UAV-Mounted VNIR/SWIR Imaging System for Monitoring Crop Traits-A Case Study for Winter Wheat

UAV-based multispectral multi-camera systems are widely used in scientific research for non-destructive crop traits estimation to optimize agricultural management decisions. These systems typically provide data from the visible and near-infrared (VNIR) domain. However, several key absorption features related to biomass and nitrogen (N) are located in the short-wave infrared (SWIR) domain. Therefore, this study investigates a novel multi-camera system prototype that addresses this spectral gap with a sensitivity from 600 to 1700 nm by implementing dedicated bandpass filter combinations to derive application-specific vegetation indices (VIs). In this study, two VIs, GnyLi and NRI, were applied using data obtained on a single observation date at a winter wheat field experiment located in Germany. Ground truth data were destructively sampled for the entire growing season. Likewise, crop heights were derived from UAV-based RGB image data using an improved approach developed within this study. Based on these variables, regression models were derived to estimate fresh and dry biomass, crop moisture, N concentration, and N uptake. The relationships between the NIR/SWIR-based VIs and the estimated crop traits were successfully evaluated (R-2: 0.57 to 0.66). Both VIs were further validated against the sampled ground truth data (R-2: 0.75 to 0.84). These results indicate the imaging system's potential for monitoring crop traits in agricultural applications, but further multitemporal validations are needed.Peer reviewe