MRI Medical Image Denoising by Fundamental Filters

Nowadays Medical imaging technique Magnetic Resonance Imaging (MRI) plays an important role in medical setting to form high standard images contained in the human brain. MRI is commonly used once treating brain, prostate cancers, ankle and foot. The Magnetic Resonance Imaging (MRI) images are usually liable to suffer from noises such as Gaussian noise, salt and pepper noise and speckle noise. So getting of brain image with accuracy is very extremely task. An accurate brain image is very necessary for further diagnosis process. During this chapter, a median filter algorithm will be modified. Gaussian noise and Salt and pepper noise will be added to MRI image. A proposed Median filter (MF), Adaptive Median filter (AMF) and Adaptive Wiener filter (AWF) will be implemented. The filters will be used to remove the additive noises present in the MRI images. The noise density will be added gradually to MRI image to compare performance of the filters evaluation. The performance of these filters will be compared exploitation the applied mathematics parameter Peak Signal-to-Noise Ratio (PSNR)

Comparative Analysis on De-Noising of MRI Uterus Image for Identification of Endometrial Carcinoma

Purpose: The anatomical and physiological processes of the human body are pictured in radiology using different modalities. Magnetic Resonance Imaging (MRI) supports capturing the images of organs using magnetic field gradients. The quality of MR images is generally affected by various noises such as Gaussian, speckle, salt and pepper, Rayleigh, Rican etc. Removal of these noises from the MR images is essential for further diagnostic procedures. Materials and Methods: In this article, Gaussian noise, speckle noise, and salt and pepper noise are added to the MR uterus image for which different filters are applied to remove the noise for precise identification of endometrial carcinoma. Results: The different filters incorporated for the additive noise removal process are the bilateral filter, Non-Local Means (NLM) filter, anisotropic diffusion filter, and Convolution Neural Network (CNN). The efficiency of the filter is calculated by evaluating the response of the filter by gradually increasing the noise intensity of the MR images. Conclusion: Further, peak Signal-to-Noise Ratio (SNR), structural similarity index measure, image quality index and computational cost parameters are computed and analyzed

A CANDLE for a deeper in-vivo insight

A new Collaborative Approach for eNhanced Denoising under Low-light Excitation (CANDLE) is introduced for the processing of 3D laser scanning multiphoton microscopy images. CANDLE is designed to be robust for low signal-to-noise ratio (SNR) conditions typically encountered when imaging deep in scattering biological specimens. Based on an optimized non-local means filter involving the comparison of filtered patches, CANDLE locally adapts the amount of smoothing in order to deal with the noise inhomogeneity inherent to laser scanning fluorescence microscopy images. An extensive validation on synthetic data, images acquired on microspheres and in vivo images is presented. These experiments show that the CANDLE filter obtained competitive results compared to a state-of-the-art method and a locally adaptive optimized non-local means filter, especially under low SNR conditions (PSNR < 8 dB). Finally, the deeper imaging capabilities enabled by the proposed filter are demonstrated on deep tissue in vivo images of neurons and fine axonal processes in the Xenopus tadpole brain.We want to thank Florian Luisier for providing free plugin of his PureDenoise filter. We also want to thank Markku Makitalo for providing the code of their OVST. This study was supported by the Canadian Institutes of Health Research (CIHR, MOP-84360 to DLC and MOP-77567 to ESR) and Cda (CECR)-Gevas-OE016. MM holds a fellowship from the Deutscher Akademischer Austasch Dienst (DAAD) and a McGill Principal's Award. ESR is a tier 2 Canada Research Chair. This work has been partially supported by the Spanish Health Institute Carlos III through the RETICS Combiomed, RD07/0067/2001. This work benefited from the use of ImageJ.Coupé, P.; Munz, M.; Manjón Herrera, JV.; Ruthazer, ES.; Collins, DL. (2012). A CANDLE for a deeper in-vivo insight. Medical Image Analysis. 16(4):849-864. https://doi.org/10.1016/j.media.2012.01.002S84986416

Patch-wise adaptive weights smoothing

Image reconstruction from noisy data has a long history of methodological development and is based on a variety of ideas. In this paper we introduce a new method called patch-wise adaptive smoothing, that extends the Propagation-Separation approach by using comparisons of local patches of image intensities to define local adaptive weighting schemes for an improved balance of reduced variability and bias in the reconstruction result. We present the implementation of the new method in an R package aws and demonstrate its properties on a number of examples in comparison with other state-of-the art image reconstruction methods

Patch-Wise Adaptive Weights Smoothing in R

Image reconstruction from noisy data has a long history of methodological development and is based on a variety of ideas. In this paper we introduce a new method called patchwise adaptive smoothing, that extends the propagation-separation approach by using comparisons of local patches of image intensities to define local adaptive weighting schemes for an improved balance of reduced variability and bias in the reconstruction result. We present the implementation of the new method in an R package aws and demonstrate its properties on a number of examples in comparison with other state-of-the art image reconstruction methods

Comparative methods for PET image segmentation in pharyngolaryngeal squamous cell carcinoma

Several methods have been proposed for the segmentation of ¹⁸F-FDG uptake in PET. In this study, we assessed the performance of four categories of ¹⁸F-FDG PET image segmentation techniques in pharyngolaryngeal squamous cell carcinoma using clinical studies where the surgical specimen served as the benchmark

Improving the Performance of the Prony Method Using a Wavelet Domain Filter for MRI Denoising

The Prony methods are used for exponential fitting. We use a variant of the Prony method for abnormal brain tissue detection in sequences of T2 weighted magnetic resonance images. Here, MR images are considered to be affected only by Rician noise, and a new wavelet domain bilateral filtering process is implemented to reduce the noise in the images. This filter is a modification of Kazubek’s algorithm and we use synthetic images to show the ability of the new procedure to suppress noise and compare its performance with respect to the original filter, using quantitative and qualitative criteria. The tissue classification process is illustrated using a real sequence of T2 MR images, and the filter is applied to each image before using the variant of the Prony method

A Hybrid Approach of Using Particle Swarm Optimization and Volumetric Active Contour without Edge for Segmenting Brain Tumors in MRI Scan

Segmentation of brain tumors in magnetic resonance imaging is a one of the most complex processes in medical image analysis because it requires a combination of data knowledge with domain knowledge to achieve highly results. Such that, the data knowledge refers to homogeneity, continuity, and anatomical texture. While the domain knowledge refers to shapes, location, and size of the tumor to be delineated. Due to recent advances in medical imaging technologies which produce a massive number of cross-sectional slices, this makes a manual segmentation process is a very intensive, time-consuming and prone to inconsistences. In this study, an automated method for recognizing and segmenting the pathological area in MRI scans has been developed. First the dataset has been pre-processed and prepared by implementing a set of algorithms to standardize all collected samples. A particle swarm optimization is utilized to find the core of pathological area within each MRI slice. Finally, an active contour without edge method is utilized to extract the pathological area in MRI scan. Results reported on the collected dataset includes 50 MRI scans of pathological patients that was provided by Iraqi Center for Research and Magnetic Resonance of Al Imamain Al-Kadhimain Medical City in Iraq. The achieved accuracy of the proposed method was 92% compared with manual delineation

Advancements and Breakthroughs in Ultrasound Imaging

Ultrasonic imaging is a powerful diagnostic tool available to medical practitioners, engineers and researchers today. Due to the relative safety, and the non-invasive nature, ultrasonic imaging has become one of the most rapidly advancing technologies. These rapid advances are directly related to the parallel advancements in electronics, computing, and transducer technology together with sophisticated signal processing techniques. This book focuses on state of the art developments in ultrasonic imaging applications and underlying technologies presented by leading practitioners and researchers from many parts of the world

Optimizing fMRI analysis in Schizophrenia research: methodology improvements

La Resonancia Magnética funcional (RMf) es una técnica moderna de neuroimagen que permite la localización de actividad neuronal con una alta resolución espacial. La técnica de RMf emplea los cambios locales de oxigenación en la sangre, reflejados como pequeños cambios en la intensidad en un tipo concreto de imagen de Resonancia Magnética. La habilidad de esta técnica en la detección de cambios en la función en el cerebro sano y enfermo, y la localización de función anormal convierte a la RMf en una técnica ideal para el tratamiento de numerosas enfermedades y lesiones neuronales. Ya se ha aplicado clínicamente en la localización de áreas funcionales afectadas por tumores, pre- y post- operativamente. La esquizofrenia, una vasta enfermedad que se encuentra presente en el uno por cien de la población global, es una dolencia que se ha estudiado recientemente mediante técnicas de neuroimagen funcional, con más de 300 estudios publicados en revistas sobre esquizofrenia y RMf. La comprensión de los sustratos neuronales de la esquizofrenia requiere una determinación precisa de la extensión y la distribución de anormalidades en la función y anatomía cerebrales. Ya que los síntomas tienen una distribución dispersa, se debería emplear una aproximación fenomemológica a esta enfermedad para relacionar anormalidades, síntomas y prognosis con precisión. Los pacientes que tienen principalmente síntomas positivos, tales como alucinaciones auditivas y delirios, pueden tener anomalías cerebrales diferentes a aquellos que tienen síntomas negativos pronunciados. Por tanto, en el presente estudios se ha seleccionado un síntoma positivo, la presencia de alucinaciones auditivas en pacientes esquizofrénicos, como el criterio de selección de un grupo homogéneo de pacientes esquizofrénicos auditivos. Esta tesis presenta la aplicación de la RMf al estudio de la enfermedad de la esquizofrenia. Finalmente, un nuevo método de filtrado de datos de RMf, el NL-means, se ha propuesto y se sugiere suLull Noguera, JJ. (2008). Optimizing fMRI analysis in Schizophrenia research: methodology improvements [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/48597Palanci