Checkpointing of parallel applications in a Grid environment

The Grid environment is generic, heterogeneous, and dynamic with lots of unreliable resources making it very exposed to failures. The environment is unreliable because it is geographically dispersed involving multiple autonomous administrative domains and it is composed of a large number of components. Examples of failures in the Grid environment can be: application crash, Grid node crash, network failures, and Grid system component failures. These types of failures can affect the execution of parallel/distributed application in the Grid environment and so, protections against these faults are crucial. Therefore, it is essential to develop efficient fault tolerant mechanisms to allow users to successfully execute Grid applications. One of the research challenges in Grid computing is to be able to develop a fault tolerant solution that will ensure Grid applications are executed reliably with minimum overhead incurred. While checkpointing is the most common method to achieve fault tolerance, there is still a lot of work to be done to improve the efficiency of the mechanism. This thesis provides an in-depth description of a novel solution for checkpointing parallel applications executed on a Grid. The checkpointing mechanism implemented allows to checkpoint an application at regions where there is no interprocess communication involved and therefore reducing the checkpointing overhead and checkpoint size

Evaluation of Communication Induced Checkpointing Approaches for Reconfiguration-Based Fault-Tolerance in Embedded Systems

Reconfiguration-Based Fault-Tolerance is an approach to developing dependable safety-critical embedded applications, where redundant active or standby resources are used to cope with faults through a system reconfiguration at run-time. Compared to traditional hardware and software redundancy, it is a promising technique that may achieve dependability with a significant reduction in cost, size, weight, and power requirements. Reconfiguration necessitates using proper checkpointing protocols to support state reservation to ensure correct task restarts after a system reconfiguration. Communication Induced Checkpointing (CIC) protocols are well developed and understood for large parallel and information systems, but not much has been done for resource limited embedded systems. This paper implements four common CIC protocols in a resource constrained distributed embedded system with a Controller Area Network (CAN) backbone. An example feedback control system implementation is used for a case study. The four implemented protocols are described and performances are contrasted. The paper compares the protocols in terms of network bandwidth consumptions, CPU usages, checkpointing times, and checkpoint sizes in additional to the traditional measures of forced to local checkpoint rations and total number of checkpoints

Improving resilience of scientific software through a domain-specific approach

In this paper we present research on improving the resilience of the execution of scientific software, an increasingly important concern in High Performance Computing (HPC). We build on an existing high-level abstraction framework, the Oxford Parallel library for Structured meshes (OPS), developed for the solution of multi-block structured mesh-based applications, and implement an algorithm in the library to carry out checkpointing automatically, without the intervention of the user. The target applications are a hydrodynamics benchmark application from the Mantevo Suite, CloverLeaf 3D, the sparse linear solver proxy application TeaLeaf, and the OpenSBLI compressible Navier–Stokes direct numerical simulation (DNS) solver. We present (1) the basic algorithm that OPS relies on to determine the optimal checkpoint in terms of size and location, (2) improvements that supply additional information to improve the decision, (3) techniques that reduce the cost of writing the checkpoints to non-volatile storage, (4) a performance analysis of the developed techniques on a single workstation and on several supercomputers, including ORNL’s Titan. Our results demonstrate the utility of the high-level abstractions approach in automating the checkpointing process and show that performance is comparable to, or better than the reference in all cases

A proactive fault tolerance framework for high performance computing (HPC) systems in the cloud

High Performance Computing (HPC) systems have been widely used by scientists and researchers in both industry and university laboratories to solve advanced computation problems. Most advanced computation problems are either data-intensive or computation-intensive. They may take hours, days or even weeks to complete execution. For example, some of the traditional HPC systems computations run on 100,000 processors for weeks. Consequently traditional HPC systems often require huge capital investments. As a result, scientists and researchers sometimes have to wait in long queues to access shared, expensive HPC systems. Cloud computing, on the other hand, offers new computing paradigms, capacity, and flexible solutions for both business and HPC applications. Some of the computation-intensive applications that are usually executed in traditional HPC systems can now be executed in the cloud. Cloud computing price model eliminates huge capital investments. However, even for cloud-based HPC systems, fault tolerance is still an issue of growing concern. The large number of virtual machines and electronic components, as well as software complexity and overall system reliability, availability and serviceability (RAS), are factors with which HPC systems in the cloud must contend. The reactive fault tolerance approach of checkpoint/restart, which is commonly used in HPC systems, does not scale well in the cloud due to resource sharing and distributed systems networks. Hence, the need for reliable fault tolerant HPC systems is even greater in a cloud environment. In this thesis we present a proactive fault tolerance approach to HPC systems in the cloud to reduce the wall-clock execution time, as well as dollar cost, in the presence of hardware failure. We have developed a generic fault tolerance algorithm for HPC systems in the cloud. We have further developed a cost model for executing computation-intensive applications on HPC systems in the cloud. Our experimental results obtained from a real cloud execution environment show that the wall-clock execution time and cost of running computation-intensive applications in the cloud can be considerably reduced compared to checkpoint and redundancy techniques used in traditional HPC systems

High Performance Computing Based Methods for Simulation and Optimisation of Flow Problems

The thesis is concerned with the study of methods in high-performance computing for simulation and optimisation of flow problems that occur in the framework of microflows. We consider the adequate use of techniques in parallel computing by means of finite element based solvers for partial differential equations and by means of sensitivity- and adjoint-based optimisation methods. The main focus is on three-dimensional, low Reynolds number flows described by the instationary Navier-Stokes equations

Dependability-driven Strategies to Improve the Design and Verification of Safety-Critical HDL-based Embedded Systems

[ES] La utilización de sistemas empotrados en cada vez más ámbitos de aplicación está llevando a que su diseño deba enfrentarse a mayores requisitos de rendimiento, consumo de energía y área (PPA). Asimismo, su utilización en aplicaciones críticas provoca que deban cumplir con estrictos requisitos de confiabilidad para garantizar su correcto funcionamiento durante períodos prolongados de tiempo. En particular, el uso de dispositivos lógicos programables de tipo FPGA es un gran desafío desde la perspectiva de la confiabilidad, ya que estos dispositivos son muy sensibles a la radiación. Por todo ello, la confiabilidad debe considerarse como uno de los criterios principales para la toma de decisiones a lo largo del todo flujo de diseño, que debe complementarse con diversos procesos que permitan alcanzar estrictos requisitos de confiabilidad. Primero, la evaluación de la robustez del diseño permite identificar sus puntos débiles, guiando así la definición de mecanismos de tolerancia a fallos. Segundo, la eficacia de los mecanismos definidos debe validarse experimentalmente. Tercero, la evaluación comparativa de la confiabilidad permite a los diseñadores seleccionar los componentes prediseñados (IP), las tecnologías de implementación y las herramientas de diseño (EDA) más adecuadas desde la perspectiva de la confiabilidad. Por último, la exploración del espacio de diseño (DSE) permite configurar de manera óptima los componentes y las herramientas seleccionados, mejorando así la confiabilidad y las métricas PPA de la implementación resultante. Todos los procesos anteriormente mencionados se basan en técnicas de inyección de fallos para evaluar la robustez del sistema diseñado. A pesar de que existe una amplia variedad de técnicas de inyección de fallos, varias problemas aún deben abordarse para cubrir las necesidades planteadas en el flujo de diseño. Aquellas soluciones basadas en simulación (SBFI) deben adaptarse a los modelos de nivel de implementación, teniendo en cuenta la arquitectura de los diversos componentes de la tecnología utilizada. Las técnicas de inyección de fallos basadas en FPGAs (FFI) deben abordar problemas relacionados con la granularidad del análisis para poder localizar los puntos débiles del diseño. Otro desafío es la reducción del coste temporal de los experimentos de inyección de fallos. Debido a la alta complejidad de los diseños actuales, el tiempo experimental dedicado a la evaluación de la confiabilidad puede ser excesivo incluso en aquellos escenarios más simples, mientras que puede ser inviable en aquellos procesos relacionados con la evaluación de múltiples configuraciones alternativas del diseño. Por último, estos procesos orientados a la confiabilidad carecen de un soporte instrumental que permita cubrir el flujo de diseño con toda su variedad de lenguajes de descripción de hardware, tecnologías de implementación y herramientas de diseño. Esta tesis aborda los retos anteriormente mencionados con el fin de integrar, de manera eficaz, estos procesos orientados a la confiabilidad en el flujo de diseño. Primeramente, se proponen nuevos métodos de inyección de fallos que permiten una evaluación de la confiabilidad, precisa y detallada, en diferentes niveles del flujo de diseño. Segundo, se definen nuevas técnicas para la aceleración de los experimentos de inyección que mejoran su coste temporal. Tercero, se define dos estrategias DSE que permiten configurar de manera óptima (desde la perspectiva de la confiabilidad) los componentes IP y las herramientas EDA, con un coste experimental mínimo. Cuarto, se propone un kit de herramientas que automatiza e incorpora con eficacia los procesos orientados a la confiabilidad en el flujo de diseño semicustom. Finalmente, se demuestra la utilidad y eficacia de las propuestas mediante un caso de estudio en el que se implementan tres procesadores empotrados en un FPGA de Xilinx serie 7.[CA] La utilització de sistemes encastats en cada vegada més àmbits d'aplicació està portant al fet que el seu disseny haja d'enfrontar-se a majors requisits de rendiment, consum d'energia i àrea (PPA). Així mateix, la seua utilització en aplicacions crítiques provoca que hagen de complir amb estrictes requisits de confiabilitat per a garantir el seu correcte funcionament durant períodes prolongats de temps. En particular, l'ús de dispositius lògics programables de tipus FPGA és un gran desafiament des de la perspectiva de la confiabilitat, ja que aquests dispositius són molt sensibles a la radiació. Per tot això, la confiabilitat ha de considerar-se com un dels criteris principals per a la presa de decisions al llarg del tot flux de disseny, que ha de complementar-se amb diversos processos que permeten aconseguir estrictes requisits de confiabilitat. Primer, l'avaluació de la robustesa del disseny permet identificar els seus punts febles, guiant així la definició de mecanismes de tolerància a fallades. Segon, l'eficàcia dels mecanismes definits ha de validar-se experimentalment. Tercer, l'avaluació comparativa de la confiabilitat permet als dissenyadors seleccionar els components predissenyats (IP), les tecnologies d'implementació i les eines de disseny (EDA) més adequades des de la perspectiva de la confiabilitat. Finalment, l'exploració de l'espai de disseny (DSE) permet configurar de manera òptima els components i les eines seleccionats, millorant així la confiabilitat i les mètriques PPA de la implementació resultant. Tots els processos anteriorment esmentats es basen en tècniques d'injecció de fallades per a poder avaluar la robustesa del sistema dissenyat. A pesar que existeix una àmplia varietat de tècniques d'injecció de fallades, diverses problemes encara han d'abordar-se per a cobrir les necessitats plantejades en el flux de disseny. Aquelles solucions basades en simulació (SBFI) han d'adaptar-se als models de nivell d'implementació, tenint en compte l'arquitectura dels diversos components de la tecnologia utilitzada. Les tècniques d'injecció de fallades basades en FPGAs (FFI) han d'abordar problemes relacionats amb la granularitat de l'anàlisi per a poder localitzar els punts febles del disseny. Un altre desafiament és la reducció del cost temporal dels experiments d'injecció de fallades. A causa de l'alta complexitat dels dissenys actuals, el temps experimental dedicat a l'avaluació de la confiabilitat pot ser excessiu fins i tot en aquells escenaris més simples, mentre que pot ser inviable en aquells processos relacionats amb l'avaluació de múltiples configuracions alternatives del disseny. Finalment, aquests processos orientats a la confiabilitat manquen d'un suport instrumental que permeta cobrir el flux de disseny amb tota la seua varietat de llenguatges de descripció de maquinari, tecnologies d'implementació i eines de disseny. Aquesta tesi aborda els reptes anteriorment esmentats amb la finalitat d'integrar, de manera eficaç, aquests processos orientats a la confiabilitat en el flux de disseny. Primerament, es proposen nous mètodes d'injecció de fallades que permeten una avaluació de la confiabilitat, precisa i detallada, en diferents nivells del flux de disseny. Segon, es defineixen noves tècniques per a l'acceleració dels experiments d'injecció que milloren el seu cost temporal. Tercer, es defineix dues estratègies DSE que permeten configurar de manera òptima (des de la perspectiva de la confiabilitat) els components IP i les eines EDA, amb un cost experimental mínim. Quart, es proposa un kit d'eines (DAVOS) que automatitza i incorpora amb eficàcia els processos orientats a la confiabilitat en el flux de disseny semicustom. Finalment, es demostra la utilitat i eficàcia de les propostes mitjançant un cas d'estudi en el qual s'implementen tres processadors encastats en un FPGA de Xilinx serie 7.[EN] Embedded systems are steadily extending their application areas, dealing with increasing requirements in performance, power consumption, and area (PPA). Whenever embedded systems are used in safety-critical applications, they must also meet rigorous dependability requirements to guarantee their correct operation during an extended period of time. Meeting these requirements is especially challenging for those systems that are based on Field Programmable Gate Arrays (FPGAs), since they are very susceptible to Single Event Upsets. This leads to increased dependability threats, especially in harsh environments. In such a way, dependability should be considered as one of the primary criteria for decision making throughout the whole design flow, which should be complemented by several dependability-driven processes. First, dependability assessment quantifies the robustness of hardware designs against faults and identifies their weak points. Second, dependability-driven verification ensures the correctness and efficiency of fault mitigation mechanisms. Third, dependability benchmarking allows designers to select (from a dependability perspective) the most suitable IP cores, implementation technologies, and electronic design automation (EDA) tools. Finally, dependability-aware design space exploration (DSE) allows to optimally configure the selected IP cores and EDA tools to improve as much as possible the dependability and PPA features of resulting implementations. The aforementioned processes rely on fault injection testing to quantify the robustness of the designed systems. Despite nowadays there exists a wide variety of fault injection solutions, several important problems still should be addressed to better cover the needs of a dependability-driven design flow. In particular, simulation-based fault injection (SBFI) should be adapted to implementation-level HDL models to take into account the architecture of diverse logic primitives, while keeping the injection procedures generic and low-intrusive. Likewise, the granularity of FPGA-based fault injection (FFI) should be refined to the enable accurate identification of weak points in FPGA-based designs. Another important challenge, that dependability-driven processes face in practice, is the reduction of SBFI and FFI experimental effort. The high complexity of modern designs raises the experimental effort beyond the available time budgets, even in simple dependability assessment scenarios, and it becomes prohibitive in presence of alternative design configurations. Finally, dependability-driven processes lack an instrumental support covering the semicustom design flow in all its variety of description languages, implementation technologies, and EDA tools. Existing fault injection tools only partially cover the individual stages of the design flow, being usually specific to a particular design representation level and implementation technology. This work addresses the aforementioned challenges by efficiently integrating dependability-driven processes into the design flow. First, it proposes new SBFI and FFI approaches that enable an accurate and detailed dependability assessment at different levels of the design flow. Second, it improves the performance of dependability-driven processes by defining new techniques for accelerating SBFI and FFI experiments. Third, it defines two DSE strategies that enable the optimal dependability-aware tuning of IP cores and EDA tools, while reducing as much as possible the robustness evaluation effort. Fourth, it proposes a new toolkit (DAVOS) that automates and seamlessly integrates the aforementioned dependability-driven processes into the semicustom design flow. Finally, it illustrates the usefulness and efficiency of these proposals through a case study consisting of three soft-core embedded processors implemented on a Xilinx 7-series SoC FPGA.Tuzov, I. (2020). Dependability-driven Strategies to Improve the Design and Verification of Safety-Critical HDL-based Embedded Systems [Tesis doctoral]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/159883TESI

Reversible Computation: Extending Horizons of Computing

This open access State-of-the-Art Survey presents the main recent scientific outcomes in the area of reversible computation, focusing on those that have emerged during COST Action IC1405 "Reversible Computation - Extending Horizons of Computing", a European research network that operated from May 2015 to April 2019. Reversible computation is a new paradigm that extends the traditional forwards-only mode of computation with the ability to execute in reverse, so that computation can run backwards as easily and naturally as forwards. It aims to deliver novel computing devices and software, and to enhance existing systems by equipping them with reversibility. There are many potential applications of reversible computation, including languages and software tools for reliable and recovery-oriented distributed systems and revolutionary reversible logic gates and circuits, but they can only be realized and have lasting effect if conceptual and firm theoretical foundations are established first

Microkernel mechanisms for improving the trustworthiness of commodity hardware

The thesis presents microkernel-based software-implemented mechanisms for improving the trustworthiness of computer systems based on commercial off-the-shelf (COTS) hardware that can malfunction when the hardware is impacted by transient hardware faults. The hardware anomalies, if undetected, can cause data corruptions, system crashes, and security vulnerabilities, significantly undermining system dependability. Specifically, we adopt the single event upset (SEU) fault model and address transient CPU or memory faults. We take advantage of the functional correctness and isolation guarantee provided by the formally verified seL4 microkernel and hardware redundancy provided by multicore processors, design the redundant co-execution (RCoE) architecture that replicates a whole software system (including the microkernel) onto different CPU cores, and implement two variants, loosely-coupled redundant co-execution (LC-RCoE) and closely-coupled redundant co-execution (CC-RCoE), for the ARM and x86 architectures. RCoE treats each replica of the software system as a state machine and ensures that the replicas start from the same initial state, observe consistent inputs, perform equivalent state transitions, and thus produce consistent outputs during error-free executions. Compared with other software-based error detection approaches, the distinguishing feature of RCoE is that the microkernel and device drivers are also included in redundant co-execution, significantly extending the sphere of replication (SoR). Based on RCoE, we introduce two kernel mechanisms, fingerprint validation and kernel barrier timeout, detecting fault-induced execution divergences between the replicated systems, with the flexibility of tuning the error detection latency and coverage. The kernel error-masking mechanisms built on RCoE enable downgrading from triple modular redundancy (TMR) to dual modular redundancy (DMR) without service interruption. We run synthetic benchmarks and system benchmarks to evaluate the performance overhead of the approach, observe that the overhead varies based on the characteristics of workloads and the variants (LC-RCoE or CC-RCoE), and conclude that the approach is applicable for real-world applications. The effectiveness of the error detection mechanisms is assessed by conducting fault injection campaigns on real hardware, and the results demonstrate compelling improvement