MAGDA: A Mobile Agent based Grid Architecture

Mobile agents mean both a technology and a programming paradigm. They allow for a flexible approach which can alleviate a number of issues present in distributed and Grid-based systems, by means of features such as migration, cloning, messaging and other provided mechanisms. In this paper we describe an architecture (MAGDA – Mobile Agent based Grid Architecture) we have designed and we are currently developing to support programming and execution of mobile agent based application upon Grid systems

Actors: The Ideal Abstraction for Programming Kernel-Based Concurrency

GPU and multicore hardware architectures are commonly used in many different application areas to accelerate problem solutions relative to single CPU architectures. The typical approach to accessing these hardware architectures requires embedding logic into the programming language used to construct the application; the two primary forms of embedding are: calls to API routines to access the concurrent functionality, or pragmas providing concurrency hints to a language compiler such that particular blocks of code are targeted to the concurrent functionality. The former approach is verbose and semantically bankrupt, while the success of the latter approach is restricted to simple, static uses of the functionality. Actor-based applications are constructed from independent, encapsulated actors that interact through strongly-typed channels. This paper presents a first attempt at using actors to program kernels targeted at such concurrent hardware. Besides the glove-like fit of a kernel to the actor abstraction, quantitative code analysis shows that actor-based kernels are always significantly simpler than API-based coding, and generally simpler than pragma-based coding. Additionally, performance measurements show that the overheads of actor-based kernels are commensurate to API-based kernels, and range from equivalent to vastly improved for pragma-based annotations, both for sample and real-world applications

Porting and tuning of the Mont-Blanc benchmarks to the multicore ARM 64bit architecture

This project is about porting and tuning the Mont-Blanc benchmarks to the multicore ARM 64 bits architecture. The Mont-Blanc benchmarks are part of the Mont-Blanc European project and they have been developed internally in the BSC (Barcelona Supercomputing Center). The project will explore the possibilities that an ARM architecture can offer running in a HPC (High Performance Computing) setup, this includes to learn how to tune and adapt a parallelized computer program and analyze its execution behavior. As part of the project, we will analyze the performance of each benchmark using instrumentation tools such like Extrae and Paraver. Each benchmark will be adapted, tuned and executed mainly in the three new Mont-Blanc mini-clusters, Thunder (ARMv8 custom), Merlin (ARMv8 custom) and Jetson TX (ARMv8 cortex-a57) using the OmpSs programming model. The evolution of the performance obtained will be shown followed by a brief analysis of the results after each optimization.Aquest projecte es basa en adaptar i afinar els Mont-Blanc benchmarks a l’arquitectura multinucli ARM 64 bits. Els Mont-Blanc benchmarks formen part del projecte Europeu Mont-Blanc i han estat desenvolupats internament en el BSC (Barcelona Supercomputing Center). Aquest projecte explorarà el potencial d’usar l’arquitectura ARM en un entorn HPC (High Performance Computing), això inclou aprendre a adaptar i afinar un programa paral·lel, i analitzar el seu comportament durant l’execució. Com a part del projecte, s’analitzarà el rendiment de cada benchmark usant eines d’instrumentació com Extrae o Paraver. Cada benchmark serà adaptat, afinat i executat en els tres nous miniclústers de Mont-Blanc, Thunder (ARMv8 personalitzat), Merlin (ARMv8 personalitzat) i Jetson TX (ARMv8 cortex-a57) usant el model de programació OmpSs. Es mostrarà l’evolució del rendiment, seguit d’una breu explicació dels resultats després de cada optimització.Este proyecto se basa en adaptar y afinar los Mont-blanc benchmarks a la arquitectura multi-núcleo ARM 64 bits. Los Mont-Blanc benchmarks forman parte del proyecto Europeo Mont-Blanc y han sido desarrollados internamente en el BSC (Barcelona Supercomputing Center). Este proyecto explorará el potencial de usar la arquitectura ARM en un entorno HPC (High Performance Computing), esto incluye aprender a adaptar y afinar un programa paralelo, y analizar su comportamiento durante la ejecución. Como parte del proyecto, se analizará el rendimiento de cada benchmark usando herramientas de instrumentación como Extrae o Paraver. Cada benchmark será adaptado, afinado y ejecutado en los tres nuevos mini-clústeres de Mont-Blanc, Thunder (ARMv8 personalizado), Merlin (ARMv8 personalizado) y Jetson TX (ARMv8 cortex-a57) usando el modelo de programación OmpSs. Se mostrará la evolución del rendimiento obtenido, y una breve explicación de los resultados después de cada optimización

Towards Energy Efficiency in Heterogeneous Processors: Findings on Virtual Screening Methods

The integration of the latest breakthroughs in computational modeling and high performance computing (HPC) has leveraged advances in the fields of healthcare and drug discovery, among others. By integrating all these developments together, scientists are creating new exciting personal therapeutic strategies for living longer that were unimaginable not that long ago. However, we are witnessing the biggest revolution in HPC in the last decade. Several graphics processing unit architectures have established their niche in the HPC arena but at the expense of an excessive power and heat. A solution for this important problem is based on heterogeneity. In this paper, we analyze power consumption on heterogeneous systems, benchmarking a bioinformatics kernel within the framework of virtual screening methods. Cores and frequencies are tuned to further improve the performance or energy efficiency on those architectures. Our experimental results show that targeted low‐cost systems are the lowest power consumption platforms, although the most energy efficient platform and the best suited for performance improvement is the Kepler GK110 graphics processing unit from Nvidia by using compute unified device architecture. Finally, the open computing language version of virtual screening shows a remarkable performance penalty compared with its compute unified device architecture counterpart.Ingeniería, Industria y Construcció

Secure Virtualization and Multicore Platforms State-of-the-Art report

SVaM

Performance and Power Analysis of HPC Workloads on Heterogenous Multi-Node Clusters

Performance analysis tools allow application developers to identify and characterize the inefficiencies that cause performance degradation in their codes, allowing for application optimizations. Due to the increasing interest in the High Performance Computing (HPC) community towards energy-efficiency issues, it is of paramount importance to be able to correlate performance and power figures within the same profiling and analysis tools. For this reason, we present a performance and energy-efficiency study aimed at demonstrating how a single tool can be used to collect most of the relevant metrics. In particular, we show how the same analysis techniques can be applicable on different architectures, analyzing the same HPC application on a high-end and a low-power cluster. The former cluster embeds Intel Haswell CPUs and NVIDIA K80 GPUs, while the latter is made up of NVIDIA Jetson TX1 boards, each hosting an Arm Cortex-A57 CPU and an NVIDIA Tegra X1 Maxwell GPU.The research leading to these results has received funding from the European Community’s Seventh Framework Programme [FP7/2007-2013] and Horizon 2020 under the Mont-Blanc projects [17], grant agreements n. 288777, 610402 and 671697. E.C. was partially founded by “Contributo 5 per mille assegnato all’Università degli Studi di Ferrara-dichiarazione dei redditi dell’anno 2014”. We thank the University of Ferrara and INFN Ferrara for the access to the COKA Cluster. We warmly thank the BSC tools group, supporting us for the smooth integration and test of our setup within Extrae and Paraver.Peer ReviewedPostprint (published version