Generalized Wishart processes for interpolation over diffusion tensor fields

Diffusion Magnetic Resonance Imaging (dMRI) is a non-invasive tool for watching the microstructure of fibrous nerve and muscle tissue. From dMRI, it is possible to estimate 2-rank diffusion tensors imaging (DTI) fields, that are widely used in clinical applications: tissue segmentation, fiber tractography, brain atlas construction, brain conductivity models, among others. Due to hardware limitations of MRI scanners, DTI has the difficult compromise between spatial resolution and signal noise ratio (SNR) during acquisition. For this reason, the data are often acquired with very low resolution. To enhance DTI data resolution, interpolation provides an interesting software solution. The aim of this work is to develop a methodology for DTI interpolation that enhance the spatial resolution of DTI fields. We assume that a DTI field follows a recently introduced stochastic process known as a generalized Wishart process (GWP), which we use as a prior over the diffusion tensor field. For posterior inference, we use Markov Chain Monte Carlo methods. We perform experiments in toy and real data. Results of GWP outperform other methods in the literature, when compared in different validation protocols

3D SEM Surface Reconstruction: An Optimized, Adaptive, and Intelligent Approach

Structural analysis of microscopic objects is a longstanding topic in several scientific disciplines, including biological, mechanical, and material sciences. The scanning electron microscope (SEM), as a promising imaging equipment has been around to determine the surface properties (e.g., compositions or geometries) of specimens by achieving increased magnification, contrast, and resolution greater than one nanometer. Whereas SEM micrographs still remain two-dimensional (2D), many research and educational questions truly require knowledge and information about their three-dimensional (3D) surface structures. Having 3D surfaces from SEM images would provide true anatomic shapes of micro samples which would allow for quantitative measurements and informative visualization of the systems being investigated. In this research project, we novel design and develop an optimized, adaptive, and intelligent multi-view approach named 3DSEM++ for 3D surface reconstruction of SEM images, making a 3D SEM dataset publicly and freely available to the research community. The work is expected to stimulate more interest and draw attention from the computer vision and multimedia communities to the fast-growing SEM application area

Modeling Bottom-Up Visual Attention Using Dihedral Group D4

Published version. Source at http://dx.doi.org/10.3390/sym8080079 In this paper, first, we briefly describe the dihedral group D4 that serves as the basis for calculating saliency in our proposed model. Second, our saliency model makes two major changes in a latest state-of-the-art model known as group-based asymmetry. First, based on the properties of the dihedral group D4, we simplify the asymmetry calculations associated with the measurement of saliency. This results is an algorithm that reduces the number of calculations by at least half that makes it the fastest among the six best algorithms used in this research article. Second, in order to maximize the information across different chromatic and multi-resolution features, the color image space is de-correlated. We evaluate our algorithm against 10 state-of-the-art saliency models. Our results show that by using optimal parameters for a given dataset, our proposed model can outperform the best saliency algorithm in the literature. However, as the differences among the (few) best saliency models are small, we would like to suggest that our proposed model is among the best and the fastest among the best. Finally, as a part of future work, we suggest that our proposed approach on saliency can be extended to include three-dimensional image data

Probabilistic correspondence analysis for neuroimaging problems

Establecer correspondencias de forma significativas entre los objetivos como en los problemas de neuroimagen es crucial para mejorar los procesos de correspondencia. Por ejemplo, el problema de correspondencia consiste en encontrar relaciones significativas entre cualquier par de estructuras cerebrales como en el problema de registro estático, o analizar cambios temporales de una enfermedad neurodegenerativa dada a través del tiempo para un análisis dinámico de la forma del cerebro..

Learning Control of Fixed-Wing Unmanned Aerial Vehicles Using Fuzzy Neural Networks

A learning control strategy is preferred for the control and guidance of a fixed-wing unmanned aerial vehicle to deal with lack of modeling and flight uncertainties. For learning the plant model as well as changing working conditions online, a fuzzy neural network (FNN) is used in parallel with a conventional P (proportional) controller. Among the learning algorithms in the literature, a derivative-free one, sliding mode control (SMC) theory-based learning algorithm, is preferred as it has been proved to be computationally efficient in real-time applications. Its proven robustness and finite time converging nature make the learning algorithm appropriate for controlling an unmanned aerial vehicle as the computational power is always limited in unmanned aerial vehicles (UAVs). The parameter update rules and stability conditions of the learning are derived, and the proof of the stability of the learning algorithm is shown by using a candidate Lyapunov function. Intensive simulations are performed to illustrate the applicability of the proposed controller which includes the tracking of a three-dimensional trajectory by the UAV subject to time-varying wind conditions. The simulation results show the efficiency of the proposed control algorithm, especially in real-time control systems because of its computational efficiency

Probabilistic correspondence analysis for neuroimaging problems

Establecer correspondencias de forma significativas entre los objetivos como en los problemas de neuroimagen es crucial para mejorar los procesos de correspondencia. Por ejemplo, el problema de correspondencia consiste en encontrar relaciones significativas entre cualquier par de estructuras cerebrales como en el problema de registro estático, o analizar cambios temporales de una enfermedad neurodegenerativa dada a través del tiempo para un análisis dinámico de la forma del cerebro..

Study of Computational Image Matching Techniques: Improving Our View of Biomedical Image Data

Image matching techniques are proven to be necessary in various fields of science and engineering, with many new methods and applications introduced over the years. In this PhD thesis, several computational image matching methods are introduced and investigated for improving the analysis of various biomedical image data. These improvements include the use of matching techniques for enhancing visualization of cross-sectional imaging modalities such as Computed Tomography (CT) and Magnetic Resonance Imaging (MRI), denoising of retinal Optical Coherence Tomography (OCT), and high quality 3D reconstruction of surfaces from Scanning Electron Microscope (SEM) images. This work greatly improves the process of data interpretation of image data with far reaching consequences for basic sciences research. The thesis starts with a general notion of the problem of image matching followed by an overview of the topics covered in the thesis. This is followed by introduction and investigation of several applications of image matching/registration in biomdecial image processing: a) registration-based slice interpolation, b) fast mesh-based deformable image registration and c) use of simultaneous rigid registration and Robust Principal Component Analysis (RPCA) for speckle noise reduction of retinal OCT images. Moving towards a different notion of image matching/correspondence, the problem of view synthesis and 3D reconstruction, with a focus on 3D reconstruction of microscopic samples from 2D images captured by SEM, is considered next. Starting from sparse feature-based matching techniques, an extensive analysis is provided for using several well-known feature detector/descriptor techniques, namely ORB, BRIEF, SURF and SIFT, for the problem of multi-view 3D reconstruction. This chapter contains qualitative and quantitative comparisons in order to reveal the shortcomings of the sparse feature-based techniques. This is followed by introduction of a novel framework using sparse-dense matching/correspondence for high quality 3D reconstruction of SEM images. As will be shown, the proposed framework results in better reconstructions when compared with state-of-the-art sparse-feature based techniques. Even though the proposed framework produces satisfactory results, there is room for improvements. These improvements become more necessary when dealing with higher complexity microscopic samples imaged by SEM as well as in cases with large displacements between corresponding points in micrographs. Therefore, based on the proposed framework, a new approach is proposed for high quality 3D reconstruction of microscopic samples. While in case of having simpler microscopic samples the performance of the two proposed techniques are comparable, the new technique results in more truthful reconstruction of highly complex samples. The thesis is concluded with an overview of the thesis and also pointers regarding future directions of the research using both multi-view and photometric techniques for 3D reconstruction of SEM images

Design and Development of Climbing Robotic Systems for Automated Inspection of Steel Structures and Bridges

Steel structures are indispensable parts of modern civilization, with typical civil infrastructures including bridges, wind turbines, electric towers, oil rigs, ships, and submarines, all made of steel. These structures require frequent maintenance to ensure safety and longevity. Steel bridges are the most challenging architectures due totheir complexity and height. Most inspections are conducted manually by professional human inspectors with special devices to inspect visible damages and defects on or inside these structures. However, this procedure is usually highly time-consuming, costly, and risky. Automated solutions are desired to address this problem. However, arduous engineering is delaying progress. A complete system needs to deal with three main problems: (1) locomotive performance for the high complexity of steel bridges, including differential curvatures, transitions between beams, and obstacles; (2) data collection capability, inclusive of visible and invisible damages, in-depth information such as vibration, coat, and material thickness, etc.; and (3) working conditions made up of gust winds. To achieve such a complete system, this dissertation presents novel developments of inspection-climbing robots. Five different robot versions are designed to find the simplest and most effective configuration as well as control manner. Our approach started with (1) a transformable tank-like robot integrated with a haptic device and ii two natural-inspired locomotion, (2) a roller chain-like robot, (3) a hybrid worming mobile robot, (4) a multi-directional bicycle robot, and (5) an omni-directional climbing Robot, identified as the most potential solution for automated steel bridge inspection. For each robotic development, detailed mechanical analysis frameworks are presented. Both lab tests and field deployments of these robotic systems have been conducted to validate the proposed designs