Interaction Between Motor Domains Can Explain the Complex Dynamics of Heterodimeric Kinesins

Motor proteins are active enzyme molecules that play a crucial role in many biological processes. They transform the chemical energy into the mechanical work and move unidirectionally along rigid cytoskeleton filaments. Single-molecule experiments suggest that motor proteins, consisting of two motor domains, move in a hand-over-hand mechanism when each subunit changes between trailing and leading positions in alternating steps, and these subunits do not interact with each other. However, recent experiments on heterodimeric kinesins suggest that the motion of motor domains is not independent, but rather strongly coupled and coordinated, although the mechanism of these interactions are not known. We propose a simple discrete stochastic model to describe the dynamics of homodimeric and heterodimeric two-headed motor proteins. It is argued that interactions between motor domains modify free energy landscapes of each motor subunit, and motor proteins still move via the hand-over-hand mechanism but with different transitions rates. Our calculations of biophysical properties agree with experimental observations. Several ways to test the theoretical model are proposed.Comment: To appear in New J. Phy

Cargo adaptors regulate stepping and force generation of mammalian dynein-dynactin.

Cytoplasmic dynein is an ATP-driven motor that transports intracellular cargos along microtubules. Dynein adopts an inactive conformation when not attached to a cargo, and motility is activated when dynein assembles with dynactin and a cargo adaptor. It was unclear how active dynein-dynactin complexes step along microtubules and transport cargos under tension. Using single-molecule imaging, we showed that dynein-dynactin advances by taking 8 to 32-nm steps toward the microtubule minus end with frequent sideways and backward steps. Multiple dyneins collectively bear a large amount of tension because the backward stepping rate of dynein is insensitive to load. Recruitment of two dyneins to dynactin increases the force generation and the likelihood of winning against kinesin in a tug-of-war but does not directly affect velocity. Instead, velocity is determined by cargo adaptors and tail-tail interactions between two closely packed dyneins. Our results show that cargo adaptors modulate dynein motility and force generation for a wide range of cellular functions

Simulated Performance of a Renewable Energy Technology – Heat Pump Systems in Semi-Arid California Greenhouses

In addition to the labor, energy and water consumption are the two main cost drivers in current greenhouse systems. Consequently, considerable effort is expended to conserve energy and water, and look for alternative energy sources, especially environmentally friendly renewable energy sources and technologies. Greenhouses in hot and arid regions also require large quantities of water for irrigation. Using proper technologies and environmental management systems can significantly change the energy and moisture dynamics of greenhouse production systems. This study aims to focus on reducing natural gas, electricity, and water consumption in semi-arid California greenhouses introducing renewable energy heat pump technologies to both open and confined greenhouses in California. The confined system has no external aeration and has no need for further water supply. It has a great potential to reduce the demand for natural gas, the load on the power grid, and the demand for irrigation water in greenhouse operations. It also allows plant protection without using chemical insecticides and the accumulation of carbon dioxide without aeration losses

Water distribution in shocked regions of the NGC1333-IRAS4A protostellar outflow

We present the study of the H2O spatial distribution at two bright shocked regions along IRAS4A, one of the strongest H2O emitters among the Class 0 outflows. We obtained Herschel-PACS maps of the IRAS4A outflow and HIFI observations of two shocked positions. The largest HIFI beam of 38 arcsec at 557 GHz was mapped in several key water lines with different upper energy levels, to reveal possible spatial variations of the line profiles. We detect four H2O lines and CO (16-15) at the two selected positions. In addition, transitions from related outflow and envelope tracers are detected. Different gas components associated with the shock are identified in the H2O emission. In particular, at the head of the red lobe of the outflow, two distinct gas components with different excitation conditions are distinguished in the HIFI emission maps: a compact component, detected in the ground-state water lines, and a more extended one. Assuming that these two components correspond to two different temperature components observed in previous H2O and CO studies, the excitation analysis of the H2O emission suggests that the compact (about 3 arcsec) component is associated with a hot (T~1000 K) gas with densities ~(1-4)x10^5 cm^{-3}, whereas the extended one (10-17 arcsec) traces a warm (T~300-500 K) and dense gas (~(3-5)x10^7 cm^{-3}). Finally, using the CO (16-15) emission observed at R2, we estimate the H2O/H2 abundance of the warm and hot components to be (7-10)x10^{-7} and (3-7)x10^{-5}. Our data allowed us, for the first time, to resolve spatially the two temperature components previously observed with HIFI and PACS. We propose that the compact hot component may be associated with the jet that impacts the surrounding material, whereas the warm, dense, and extended component originates from the compression of the ambient gas by the propagating flow.Comment: 13 pages, 11 figures. Accepted for publication in Astronomy and Astrophysic

Generalized exclusion and Hopf algebras

We propose a generalized oscillator algebra at the roots of unity with generalized exclusion and we investigate the braided Hopf structure. We find that there are two solutions: these are the generalized exclusions of the bosonic and fermionic types. We also discuss the covariance properties of these oscillatorsComment: 10 pages, to appear in J. Phys.

A comparative study on the abundance and elemental composition of POM in three interconnected basins: the Black, the Marmara and the Mediterranean Seas

The abundance and elemental composition of suspended particulate organic matter in the upper layers of the interconnected Mediterranean, Marmara and Black Seas having different ecosystems were determined in 1990-1998. The aim was principally to compare the C:N:P ratio of seston and understand factors controlling the seston composition in near- and off-shore waters of these seas. In the Marmara Sea, euphotic zone average particulate concentrations varied regionally and seasonally between 10-35 ìM for POC, 0.4-4.5 ìM for PON and 0.05-0.45 ìM for PP. These concentrations are mostly above the off-shore Black Sea values but much greater than those measured in the open waters of the north-eastern Mediterranean whose near-shore data are comparable with the seston content of the deep Black Sea. Comparison of C:N:P ratios of seston reveals that atmospheric and land-based phosphorus input influences the C:P and N:P ratios in the near-shore waters. Apparent nutrient deficiencies observed in the water column were not as remarkable in the elemental composition of seston. Unexpectedly, in the NE Mediterranean, N:P ratios from regression analyses of particulate data are very low (7-9) in the coastal region but slightly increase to levels of 10-15 in the open sea. In the Sea of Marmara, the N:P ratios (7-12) of seston are as low as in the Mediterranean, being consistent with the particulate ratios of the Black Sea inflow and NO3:PO4 ratios of the Marmara sub-halocline water. The Black Sea seston is relatively rich in carbonaceous compounds with N:P ratio ranging merely between 15-17 in the open sea but 9-27 in coastal waters where riverine discharges markedly influence the stoichiometry of seston

Deuterated water in the solar-type protostars NGC 1333 IRAS 4A and IRAS 4B

Aims. The aim of this paper is to study deuterated water in the solar-type protostars NGC1333 IRAS4A and IRAS4B, to compare their HDO abundance distribution with other star-forming regions, and to constrain their HDO/H2O ratios. Methods. Using the Herschel/HIFI instrument as well as ground-based telescopes, we observed several HDO lines covering a large excitation range (Eup/k=22-168 K) towards these protostars and an outflow position. Non-LTE radiative transfer codes were then used to determine the HDO abundance profiles in these sources. Results. The HDO fundamental line profiles show a very broad component, tracing the molecular outflows, in addition to a narrower emission component and a narrow absorbing component. In the protostellar envelope of NGC1333 IRAS4A, the HDO inner (T>100 K) and outer (T<100 K) abundances with respect to H2 are estimated at 7.5x10^{-9} and 1.2x10^{-11}, respectively, whereas, in NGC1333 IRAS4B, they are 1.0x10^{-8} and 1.2x10^{-10}, respectively. Similarly to the low-mass protostar IRAS16293-2422, an absorbing outer layer with an enhanced abundance of deuterated water is required to reproduce the absorbing components seen in the fundamental lines at 465 and 894 GHz in both sources. This water-rich layer is probably extended enough to encompass the two sources as well as parts of the outflows. In the outflows emanating from NGC1333 IRAS4A, the HDO column density is estimated at about (2-4)x10^{13} cm^{-2}, leading to an abundance of about (0.7-1.9)x10^{-9}. An HDO/H2O ratio between 7x10^{-4} and 9x10^{-2} is derived in the outflows. In the warm inner regions of these two sources, we estimate the HDO/H2O ratios at about 1x10^{-4}-4x10^{-3}. This ratio seems higher (a few %) in the cold envelope of IRAS4A, whose possible origin is discussed in relation to formation processes of HDO and H2O.Comment: 16 pages, 13 figure

Post-synthetic Modification of DUT-5-based Metal Organic Frameworks for the Generation of Single-site Catalysts and their Application in Selective Epoxidation Reactions

New single‐site catalysts based on mixed‐linker metal‐organic frameworks with DUT‐5 structure, which contain immobilized Co2+, Mn2+ and Mn3+ complexes, have successfully been synthesized via post‐synthetic modification. 2,2’‐Bipyridine‐5,5’‐dicarboxylate linkers were directly metalated, while 2‐amino‐4,4’‐biphenyldicarboxylate linkers were post‐synthetically modified by their conversion to Schiff‐base ligands and a subsequent immobilization of the metal complexes. The resulting materials were used as catalysts in the selective epoxidation of trans‐stilbene and the activities and selectivities of the different catalysts were compared. The influence of various reaction parameters on conversion, yield and selectivity were investigated. Very low catalyst amounts of 0.02 mol % were sufficient to obtain a high conversion of trans‐stilbene using molecular oxygen from air as the oxidant. For cobalt‐containing MOF catalysts, conversions up to 90 % were observed and, thus, they were more active than their manganese‐containing counterparts. Recycling experiments and hot filtration tests proved that the reactions were mainly catalyzed via heterogeneous pathways

Effect of anisotropy and destructuration on behavior of Haarajoki test embankment

This paper investigates the influence of anisotropy and destructuration on the behavior of Haarajoki test embankment, which was built by the Finnish National Road Administration as a noise barrier in 1997 on a soft clay deposit. Half of the embankment is constructed on an area improved with prefabricated vertical drains, while the other half is constructed on the natural deposit without any ground improvement. The construction and consolidation of the embankment is analyzed with the finite-element method using three different constitutive models to represent the soft clay. Two recently proposed constitutive models, namely S-CLAY1 which accounts for initial and plastic strain induced anisotropy, and its extension, called S-CLAY1S which accounts, additionally, for interparticle bonding and degradation of bonds, were used in the analysis. For comparison, the problem is also analyzed with the isotropic modified cam clay model. The results of the numerical analyses are compared with the field measurements. The simulations reveal the influence that anisotropy and destructuration have on the behavior of an embankment on soft clay