Analysis of permanent magnets as elasmobranch bycatch reduction devices in hook-and-line and longline trials

Previous studies indicate that elasmobranch fishes (sharks, skates and rays) detect the Earth’s geomagnetic field by indirect magnetoreception through electromagnetic induction, using their ampullae of Lorenzini. Applying this concept, we evaluated the capture of elasmobranchs in the presence of permanent magnets in hook-and-line and inshore longline fishing experiments. Hooks with neodymium-iron-boron magnets significantly reduced the capture of elasmobranchs overall in comparison with control and procedural control hooks in the hook-and-line experiment. Catches of Atlantic sharpnose shark (Rhizoprionodon terraenovae) and smooth dogfish (Mustelus canis) were signif icantly reduced with magnetic hook-and-line treatments, whereas catches of spiny dogfish (Squalus acanthias) and clearnose skate (Raja eglanteria) were not. Longline hooks with barium-ferrite magnets significantly reduced total elasmobranch capture when compared with control hooks. In the longline study, capture of blacktip sharks (Carcharhinus limbatus) and southern stingrays (Dasyatis americana) was reduced on magnetic hooks, whereas capture of sandbar shark (Carcharhinus plumbeus) was not affected. Teleosts, such as red drum (Sciaenops ocellatus), Atlantic croaker (Micropogonias undulatus), oyster toadfish (Opsanus tau), black sea bass (Centropristis striata), and the bluefish (Pomatomas saltatrix), showed no hook preference in either hook-and-line or longline studies. These results indicate that permanent magnets, although eliciting species-specific capture trends, warrant further investigation in commercial longline and recreational fisheries, where bycatch mortality is a leading contributor to declines in elasmobranch populations

Can Circle Hook Use Benefit Billfishes?

We performed a quantitative review to evaluate circle hook use in recreational and commercial hook-and-line fisheries that interact with billfishes (Family: Istiophoridae). Specifically, we scrutinized the findings of 11 recent empirical studies that reported, on a species-specific basis, side-by-side measures of circle vs. J-hook fishing performance: catch, mortality, deep-hooking and bleeding rates. Of the 30 total comparisons extracted from the literature that satisfied our inclusion criteria, 13 indicated significant differences between hook types for the specific metric compared. No study reported significant billfish catch rate differences between hook types. However, when significant differences between hook types were found, higher mortality rates and higher rates of deep-hooking and bleeding were associated with J-hooks relative to circle hooks. We conclude that empirical evidence is sufficient to promote circle hook use in almost all hook-and-line fishery sectors that typically interact with istiophorids. However, billfish conservation benefits will only be realized if fishers use unmodified circle hooks, commit to releasing live fish and take other appropriate measures which maximize post-release survival. While there may be fishing modes where circle hook effects are negative, for billfish conservation, we recommend managers grant exceptions to circle hook use only when experimental results support such a practice

Generalization of the Luttinger Theorem for Fermionic Ladder Systems

We apply a generalized version of the Lieb-Schultz-Mattis Theorem to fermionic ladder systems to show the existence of a low-lying excited state (except for some special fillings). This can be regarded as a non-perturbative proof for the conservation under interaction of the sum of the Fermi wave vectors of the individual channels, corresponding to a generalized version of the Luttinger Theorem to fermionic ladder systems. We conclude by noticing that the Lieb-Schultz-Mattis Theorem is not applicable in this form to show the existence of low-lying excitations in the limit that the number of legs goes to infinity, e.g. in the limit of a 2D plane.Comment: RevTex, 4 pages with 4 eps figure

Long distance decoy state quantum key distribution in optical fiber

The theoretical existence of photon-number-splitting attacks creates a security loophole for most quantum key distribution (QKD) demonstrations that use a highly attenuated laser source. Using ultra-low-noise, high-efficiency transition-edge sensor photodetectors, we have implemented the first version of a decoy-state protocol that incorporates finite statistics without the use of Gaussian approximations in a one-way QKD system, enabling the creation of secure keys immune to photon-number-splitting attacks and highly resistant to Trojan horse attacks over 107 km of optical fiber.Comment: 4 pages, 3 figure

Assessing probe-specific dye and slide biases in two-color microarray data

A primary reason for using two-color microarrays is that the use of two samples labeled with different dyes on the same slide, that bind to probes on the same spot, is supposed to adjust for many factors that introduce noise and errors into the analysis. Most users assume that any differences between the dyes can be adjusted out by standard methods of normalization, so that measures such as log ratios on the same slide are reliable measures of comparative expression. However, even after the normalization, there are still probe specific dye and slide variation among the data. We define a method to quantify the amount of the dye-by-probe and slide-by-probe interaction. This serves as a diagnostic, both visual and numeric, of the existence of probe-specific dye bias. We show how this improved the performance of two-color array analysis for arrays for genomic analysis of biological samples ranging from rice to human tissue.We develop a procedure for quantifying the extent of probe-specific dye and slide bias in two-color microarrays. The primary output is a graphical diagnostic of the extent of the bias which called ECDF (Empirical Cumulative Distribution Function), though numerical results are also obtained.We show that the dye and slide biases were high for human and rice genomic arrays in two gene expression facilities, even after the standard intensity-based normalization, and describe how this diagnostic allowed the problems causing the probe-specific bias to be addressed, and resulted in important improvements in performance. The R package LMGene which contains the method described in this paper has been available to download from Bioconductor

Theory of spin excitations in undoped and underdoped cuprates

We consider the magnetic properties of high Tc cuprates from a gauge theory point of view, with emphasis on the underdoped regime. Underdoped cuprates possess certain antiferromagnetic correlations, as evidenced, for example, by different temperature dependence of the Cu and O site NMR relaxation rates, that are not captured well by slave boson mean field theories of the t-J model. We show that the inclusion of gauge fluctuations will remedy the deficiencies of the mean field theories. As a concrete illustration of the gauge-fluctuation restoration of the antiferromangetic correlation and the feasibility of the 1/N perturbation theory, the Heisenberg spin chain is analyzed in terms of a 1+1D U(1) gauge theory with massless Dirac fermions. The 1/N-perturbative treatment of the same gauge theory in 2+1D (which can be motivated from the mean field pi-flux phase of the Heisenberg model) leads to a dynamical mass generation corresponding to an antiferromagnetic ordering. On the other hand, it is argued that in a similar gauge theory with an additional coupling to a Bose (holon) field, symmetry breaking does not occur, but antiferromagnetic correlations are enhanced, which is the situation in the underdoped cuprates.Comment: Typos corrected; minor changes made to match the published version. Related (background) materials can be found at "http://www.stanford.edu/~donhkim/physics.html

An SU(2) Formulation of the t-J model: Application to Underdoped Cuprates

We develop a slave-boson theory for the t-J model at finite doping which respect a SU(2) symmetry -- a symmetry previously known to be important at half filling. The mean field phase diagram is found to be consistent with the phases observed in the cuprate superconductors, which contains d-wave superconductor, spin gap, strange metal, and Fermi liquid phases. The spin gap phase is best understood as the staggered flux phase, which is nevertheless translationally invariant for physical quantities. The physical electron spectral function shows small Fermi segments at low doping which continuously evolve into the large Fermi surface at high doping concentrations. The close relation between the SU(2) and the U(1) slave-boson theory is discussed. The low energy effective theory for the low lying fluctuations is derived, and new lying modes (which were over looked in the U(1) theory) are identified.Comment: 28 pages, 8 figures, RevTe

Chemical shark repellent: Myth or fact? The effect of a shark necromone on shark feeding behaviour

a b s t r a c t Since 1942, the search for an effective chemical shark repellent has been ongoing research concern in the United States. A long-standing anecdote that sharks avoid areas containing decomposing shark tissue has initiated new interest in identifying trace chemical alarm signals produced during decomposition (necromones). A commercially-sourced shark necromone produced from putrefied shark tissue was evaluated over a five-year period in South Bimini, Bahamas. Competitively-feeding populations of Caribbean reef sharks (Carcharhinus perezi) and blacknose sharks (Carcharhinus acronotus) were exposed to necromones using pressurized aerosol canisters at the surface. Shark density estimations were made at the initial, 1 min and 5 min intervals after preliminary exposure along with continuous exposure of feeding stimulus. In both species, an unambiguous halt in feeding behavior was observed within 1 min after exposure of the necromone. For aerosol delivery, a 150 mL dose of the necromone from a single aerosol canister is able to halt all feeding activity in a combined population of C. perezi and C. acronotus. Shark necromones induced a spectacular alarm response in interacting sharks resulting in a temporary evacuation of an area containing feeding stimuli. Additionally, sharks were not deterred by alternative treatment presentations of 10% weight percent (w/w) aqueous urea, 10% w/w oleic acid in ethanol, or water buffered to pH 8.5. Habituation to the necromone was not observed for repeated tests at the same location. In all experiments, the presence of a shark necromone did not produce a similar aversion response for teleosts as observed in C. perezi or C. acronotus; however, anecdotal observations demonstrate that teleosts increased their feeding rate in the presence of the necromone. Experimental controls using denatured ethanol or water confirmed that feeding sharks were not deterred by bubbles, sound, or the solvents used to extract the necromones. Comprehensive two-dimensional gas chromatography coupled to time-of-flight mass spectrometry indicates that the necromone is a complex solution rich in amino acids and putrefaction products. Experiments demonstrate that the key chemical component responsible for the alarm response is within these amino acids and/or putrefaction products, but further experimentation is needed to more accurately identify the active ingredient. Shark necromones hold particular promise for use in shark bycatch reduction and conservation. The existence of a putative chemical shark repellent has been confirmed