Assessment of the effects of forest fragmentation on aerial insectivorous bats in the Amazonian rainforest

Land use change and habitat fragmentation are among the most severe threats to biodiversity, especially in the tropics. In the Amazon, the abandonment of formerly deforested areas allowed the expansion of secondary regrowth, a type of habitat where bats are known to provide important ecosystem services. Amongst them, aerial insectivorous bats have been neglected in most Neotropical studies and remain poorly studied. However, the current upsurge in acoustic technology makes them easy targets to be monitored using ultrasound detectors. The aim of this thesis was to reveal the diversity of aerial insectivorous bats and quantify the effects of forest fragmentation on this ensemble within the Biological Dynamics Forest Fragments Project, a whole ecosystem experiment in the Amazon, currently composed of a mosaic of unflooded rainforest with continuous forest, and forest fragments embedded in a matrix of secondary regrowth. As part of this thesis, the first “Field Guide to the Bats of the Amazon” was published. A custom-built classifier was developed which was able to identify a large proportion of files to sonotype level (with > 90% accuracy), leaving the rest (<25%) to be manually classified. I also tested 20 different recording schemes and provided guidelines to optimize protocols for acoustic studies. In forest fragments and their adjoining secondary forests, taxonomic, phylogenetic and functional α diversity became gradually poorer with decreasing fragment size. In terms of β diversity, bat assemblage composition in secondary forests after ~30 years of recovery was still significantly different from that in continuous forest. However, forest edges harboured highly diverse bat assemblages due to the opening of cluttered areas, and the increase of less-sensitive species. Responses towards fragmentation were species-specific and strongly related to their functional traits. The results of this thesis highlight the irreplaceable value of tropical primary forests due to the long time required to recover fragmented ecosystems.Fundação de Amparo à Pesquisa do Estado do Amazonas [FAPEAM 062.01173 / 2015] (Paulo ED Bobrowiec)Bolsa de estudos do CNPq [160049 / 2013-0] (Paulo ED Bobrowiec

Opportunistic predation by crested owl Lophostrix cristata upon Seba's Short-tailed bat Carollia perspicillata

This note reports two opportunistic events of predation on Seba's Short-tailed Bats Carollia perspicillata (Chiroptera: Phyllostomidae) by an immature Crested Owl Lophostrix cristata (Strigiformes: Strigidae), in Central Amazonia, Brazil. Both predation events took place while bats were mist-netted. Given the abundance of C. perspicillata in the study area we argue that this bat species likely constitutes a natural prey for L. cristata

When bats go viral : negative framings in virological research imperil bat conservation

The recent upsurge in bat-borne virus research has attracted substantial news coverage worldwide. A systematic review of virological literature revealed that bats were described as a major concern for public health in half of all studies (51%), and that their key role in delivering ecosystem services was disregarded in almost all studies (96%). Although research on zoonoses is of the utmost importance, biased framings of bats can undermine decades of conservation efforts. We urge researchers and science communicators to consider the conservation impacts of how research findings are presented to the public carefully, and, whenever possible, to highlight the ecological significance of bats, their dire conservation situation and their importance for human well-being.Peer reviewe

Erosion of phylogenetic diversity in Neotropical bat assemblages: findings from a whole-ecosystem fragmentation experiment

Abstract The traditional focus on taxonomic diversity metrics for investigating species responses to habitat loss and fragmentation has limited our understanding of how biodiversity is impacted by habitat modification. This is particularly true for taxonomic groups such as bats which exhibit species-specific responses. Here, we investigate phylogenetic alpha and beta diversity of Neotropical bat assemblages across two environmental gradients, one in habitat quality and one in habitat amount. We surveyed bats in 39 sites located across a whole-ecosystem fragmentation experiment in the Brazilian Amazon, representing a gradient of habitat quality (interior-edge-matrix, hereafter IEM) in both continuous forest and forest fragments of different sizes (1, 10, and 100 ha; forest size gradient). For each habitat category, we quantified alpha and beta phylogenetic diversity, then used linear mixed-effects models and cluster analysis to explore how forest area and IEM gradient affect phylogenetic diversity. We found that the secondary forest matrix harboured significantly lower total evolutionary history compared to the fragment interiors, especially the matrix near the 1 ha fragments, containing bat assemblages with more closely related species. Forest fragments ≥ 10 ha had levels of phylogenetic richness similar to continuous forest, suggesting that large fragments retain considerable levels of evolutionary history. The edge and matrix adjacent to large fragments tend to have closely related lineages nonetheless, suggesting phylogenetic homogenization in these IEM gradient categories. Thus, despite the high mobility of bats, fragmentation still induces considerable levels of erosion of phylogenetic diversity, suggesting that the full amount of evolutionary history might not be able to persist in present-day human-modified landscapes.</jats:p

Echolocation of Central Amazonian ‘whispering’ phyllostomid bats: call design and interspecific variation

Phyllostomids (New World leaf-nosed bats) are the ecologically most diverse bat family and have undergone the most extensive adaptive radiation of any mammalian family. However comprehensive, multi-species studies regarding phyllostomid echolocation are scarce in the literature despite abundant ecological research. In this study, we describe the call structure and interspecific variation in call design of 40 sympatric phyllostomid species from the Central Brazilian Amazon, focussing on general patterns within genera, subfamilies and between feeding guilds. All but one species utilized short, broadband FM calls consisting of multiple harmonics. As reported for other bat families, peak frequency was negatively correlated with body mass and forearm length. Twenty-five species alternated the harmonic of maximum energy, principally between the second and third harmonic. Based on PCA, we were unable to detect any significant differences in echolocation call parameters between genera, subfamilies or different feeding guilds, confirming that acoustic surveys cannot be used to reliably monitor these species. We present Ametrida centurio as an exception to this generalized phyllostomid structure, as it is unique in producing a mono-harmonic call. Finally, we discuss several hypotheses regarding the evolutionary pressures influencing phyllostomid call structure

Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers

Background Bats are among the most successful desert mammals. Yet, our understanding of their spatio-temporal dynamics in habitat use associated with the seasonal oscillation of resources is still limited. In this study, we have employed state-of-the-art lightweight GPS loggers to track the yellow-winged bat Lavia frons in a desert in northern Kenya to investigate how seasonality in a desert affects the a) spatial and b) temporal dimensions of movements in a low-mobility bat. Methods Bats were tracked during April-May 2017 (rainy season) and January-February 2018 (dry season) using 1-g GPS loggers. Spatial and temporal dimensions of movements were quantified, respectively, as the home range and nightly activity patterns. We tested for differences between seasons to assess responses to seasonal drought. In addition, we quantified home range overlap between neighbouring individuals to investigate whether tracking data will be in accordance with previous reports on territoriality and social monogamy in L. frons. Results We obtained data for 22 bats, 13 during the rainy and 9 during the dry season. Home ranges averaged 5.46 +/- 11.04 ha and bats travelled a minimum distance of 99.69 +/- 123.42 m/hour. During the dry season, home ranges were larger than in the rainy season, and bats exhibited high activity during most of the night. No apparent association with free water was identified during the dry season. The observed spatial organisation of home ranges supports previous observations that L. frons partitions the space into territories throughout the year. Conclusions Our results suggest that, in low-mobility bats, a potential way to cope with seasonally harsh conditions and resource scarcity in deserts is to cover larger areas and increase time active, suggesting lower cost-efficiency of the foraging activity. Climate change may pose additional pressures on L. frons and other low-mobility species by further reducing food abundances.Peer reviewe

Movement seasonality in a desert-dwelling bat revealed by miniature GPS loggers

Background Bats are among the most successful desert mammals. Yet, our understanding of their spatio-temporal dynamics in habitat use associated with the seasonal oscillation of resources is still limited. In this study, we have employed state-of-the-art lightweight GPS loggers to track the yellow-winged bat Lavia frons in a desert in northern Kenya to investigate how seasonality in a desert affects the a) spatial and b) temporal dimensions of movements in a low-mobility bat. Methods Bats were tracked during April-May 2017 (rainy season) and January-February 2018 (dry season) using 1-g GPS loggers. Spatial and temporal dimensions of movements were quantified, respectively, as the home range and nightly activity patterns. We tested for differences between seasons to assess responses to seasonal drought. In addition, we quantified home range overlap between neighbouring individuals to investigate whether tracking data will be in accordance with previous reports on territoriality and social monogamy in L. frons. Results We obtained data for 22 bats, 13 during the rainy and 9 during the dry season. Home ranges averaged 5.46 +/- 11.04 ha and bats travelled a minimum distance of 99.69 +/- 123.42 m/hour. During the dry season, home ranges were larger than in the rainy season, and bats exhibited high activity during most of the night. No apparent association with free water was identified during the dry season. The observed spatial organisation of home ranges supports previous observations that L. frons partitions the space into territories throughout the year. Conclusions Our results suggest that, in low-mobility bats, a potential way to cope with seasonally harsh conditions and resource scarcity in deserts is to cover larger areas and increase time active, suggesting lower cost-efficiency of the foraging activity. Climate change may pose additional pressures on L. frons and other low-mobility species by further reducing food abundances.Peer reviewe

Rapid assessment of bat diversity in the Taita Hills Afromontane cloud forests, southeastern Kenya

Peer reviewe

Bats as potential suppressors of multiple agricultural pests : A case study from Madagascar

The conversion of natural habitats to agriculture is one of the main drivers of biotic change. Madagascar is no exception and land-use change, mostly driven by slash-and-burn agriculture, is impacting the island's exceptional biodiversity. Although most species are negatively affected by agricultural expansion, some, such as synanthropic bats, are capable of exploring newly available resources and benefit from man-made agricultural ecosystems. As bats are known predators of agricultural pests it seems possible that Malagasy bats may be preferentially foraging within agricultural areas and therefore provide important pest suppression services. To investigate the potential role of bats as pest suppressors, we conducted acoustic surveys of insectivorous bats in and around Ranomafana National Park, Madagascar, during November and December 2015. We surveyed five landcover types: irrigated rice, hillside rice, secondary vegetation, forest fragment and continuous forest. 9569 bat passes from a regional assemblage of 19 species were recorded. In parallel, we collected faeces from the six most common bat species to detect insect pest species in their diet using DNA metabarcoding. Total bat activity was higher over rice fields when compared to forest and bats belonging to the open space and edge space sonotypes were the most benefited by the conversion of forest to hillside and irrigated rice. Two economically important rice pests were detected in the faecal samples collected - the paddy swarming armyworm Spodoptera mauritia was detected in Mops leucogaster samples while the grass webworm Herpetogramma licarsisalis was detected from Mormopterus jugularis and Miniopterus majori samples. Other crops pests detected included the sugarcane cicada Yanga guttulata, the macadamia nut-borer Thaumatotibia batrachopa and the sober tabby Ericeia inangulata (a pest of citrus fruits). Samples from all bat species also contained reads from important insect disease vectors. In light of our results we argue that Malagasy insectivorous bats have the potential to suppress agricultural pests. It is important to retain and maximise Malagasy bat populations as they may contribute to higher agricultural yields and promote sustainable livelihoods.Peer reviewe