DNA profiles generated from a range of touched sample types

© 2018 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 license: http://creativecommons.org/licenses/by-nc-nd/4.0/ This author accepted manuscript is made available following 12 month embargo from date of publication (June 2018) in accordance with the publisher’s archiving policy.Direct PCR from touch DNA has a range of potential applications in the field of forensic investigation for exhibit examination that, under standard extraction methods, rarely produce informative DNA profiles. Previous studies from ‘touch DNA’ have focussed on fingermarks created under laboratory conditions. Here we report on successful STR DNA profiling from a range of touched items. Direct PCR, with no increase in cycle number, was performed after eight different sample types, typical of those submitted for forensic investigation, were handled by volunteers for a maximum of 15 s to deposit trace amounts of their DNA. Amplifications were performed using either GlobalFiler® or Identifiler® Plus following manufacturer’s instructions. These two kits were chosen deliberately as many laboratories worldwide have adopted and validated them in their workflow, thus allowing for direct PCR to be incorporated within their practises easily. It was found that informative STR profiles were obtained from all eight substrates using both STR kits. Identifiler® Plus out-performed GlobalFiler® in terms of the percentage of alleles amplified using the direct PCR approach. Both generated informative profiles from all items and all individuals, at different rates, with Identifiler® Plus being informative in a larger percentage of samples. GlobalFiler® produced profiles with an average of 60% ± 24% (36 ± 15 alleles) alleles present while Identifiler® Plus produced profiles with an average of 96% ± 4% (31 ± 1 alleles) alleles present. A comparison was made between the direct PCR approach and subjecting touched samples to a standard DNA extraction process, both using Identifiler®. An average of 4% of profiles were informative for samples that underwent extraction with 100% being informative from the same subset of samples amplified by direct PCR. Our findings further demonstrate the success of direct PCR to enhance the STR DNA profiles from touch DNA. Further, Identifiler® Plus was found to generate informative profiles more often than GlobalFiler®. Direct PCR is fast, simple, and non-destructive of evidence with the ability to generate informative genetic data where standard methods are likely to fail

Design of PI controller with input constraint: application on blending process

Because of their simplicity, reliability and effectiveness, proportional–integral–derivative (PID) controllers remain the most widely used controllers in the process industries. Actuator saturation is among the most common and significant problem in control systems design. Normal PID controller does not take this into consideration. Normally, an anti‐windup compensator is employed in the system to overcome the problem. In this contribution, a new set of controller tuning relations is developed to tune the PI controller when the system is under saturation. The blending process was described as first order plus time delay (FOPTD) process and an expression is developed for saturation level, U as a function of controller gain, Kc with the range of R 0.4–2 (ratio of time delay to time constant). The proposed tuning rule relate the parameters of the controller to the parameters of a FOPTD model of the plant to a step change in the set point. The proposed method was applied to PI controller and tested on the process of blending system of sweetened condensed milk. The performance of the controller with various tuning formulae incorporated with classical anti‐windup strategies has been compared. The simulation results showed that the proposed method could give satisfactory performance in controlling the process

Integrating Ecology and Technology to Create Innovative Pest Control Devices

To achieve long-term suppression of pest populations, devices capable of continued control over extended timeframes are needed. Creating new pest management tools to achieve this goal requires the integration of animal ecology, toxicology, and design engineering. This research outlines the development and testing of a long-life, resetting, toxin delivery system for vertebrate pest control, coupled with advances in novel species recognition systems. Such devices have the potential to offer advantages over current labor-intensive control techniques. Resetting systems have been developed to target several of the most destructive vertebrate pest species in New Zealand, including stoats and weasels. Results of enclosure trials for these two species showed similar responses after a paste containing 40% para-aminopropiophenone was delivered onto the chest and stomach, following triggering by a treadle operated system. Both species groomed the paste off shortly after application and death occurred after an average of 42 minutes for stoats and 57 minutes for weasels. The applications of these resetting devices are now being extended for the control of brushtail possums, another major vertebrate pest in New Zealand. Coupled with this, developments in species identification systems are ensuring that risks to non-targets are substantially minimized. Resetting, long-life toxin delivery systems could be deployed to control a variety of pest species, and further enhancement of these tools are ensuring their use for widespread field applications in a cost-effective, safe and reliable manner

DNA profiles generated from a range of touched sample types

© 2018 Elsevier B.V. This manuscript version is made available under the CC-BY-NC-ND 4.0 license: http://creativecommons.org/licenses/by-nc-nd/4.0/ This author accepted manuscript is made available following 12 month embargo from date of publication (June 2018) in accordance with the publisher’s archiving policy.Direct PCR from touch DNA has a range of potential applications in the field of forensic investigation for exhibit examination that, under standard extraction methods, rarely produce informative DNA profiles. Previous studies from ‘touch DNA’ have focussed on fingermarks created under laboratory conditions. Here we report on successful STR DNA profiling from a range of touched items. Direct PCR, with no increase in cycle number, was performed after eight different sample types, typical of those submitted for forensic investigation, were handled by volunteers for a maximum of 15 s to deposit trace amounts of their DNA. Amplifications were performed using either GlobalFiler® or Identifiler® Plus following manufacturer’s instructions. These two kits were chosen deliberately as many laboratories worldwide have adopted and validated them in their workflow, thus allowing for direct PCR to be incorporated within their practises easily. It was found that informative STR profiles were obtained from all eight substrates using both STR kits. Identifiler® Plus out-performed GlobalFiler® in terms of the percentage of alleles amplified using the direct PCR approach. Both generated informative profiles from all items and all individuals, at different rates, with Identifiler® Plus being informative in a larger percentage of samples. GlobalFiler® produced profiles with an average of 60% ± 24% (36 ± 15 alleles) alleles present while Identifiler® Plus produced profiles with an average of 96% ± 4% (31 ± 1 alleles) alleles present. A comparison was made between the direct PCR approach and subjecting touched samples to a standard DNA extraction process, both using Identifiler®. An average of 4% of profiles were informative for samples that underwent extraction with 100% being informative from the same subset of samples amplified by direct PCR. Our findings further demonstrate the success of direct PCR to enhance the STR DNA profiles from touch DNA. Further, Identifiler® Plus was found to generate informative profiles more often than GlobalFiler®. Direct PCR is fast, simple, and non-destructive of evidence with the ability to generate informative genetic data where standard methods are likely to fail

Perspective Innovative developments for long-term mammalian pest control

CONCLUSION: In this article we discuss recent progress and trends in a number of areas of research aimed to achieve long-term population suppression or eradication of mammalian pest species. The examples discussed here are emerging from research being conducted in New Zealand, where invasive mammalian pests are one of the greatest threats facing the national environment and economy

Phase II studies of polymer-doxorubicin (PK1, FCE28068) in the treatment of breast, lung and colorectal cancer

Phase I studies of [N-(2-hydroxypropyl)methacrylamide] (HPMA) copolymer-doxorubicin previously showed signs of activity coupled with 5-fold decreased anthracycline toxicity in chemotherapy-refractory patients. Here we report phase H studies using a similar material (FCE28068) in patients with breast (n=17), non-small cell lung (NSCLC, n=29) and colorectal (n=16) cancer. Up to 8 courses of PK1 (280 mg/m(2) doxorubicin-equivalent) were given i.v., together with I-123-labelled imaging analogue. Toxicities were tolerable, with grade 3 neutropenia more prominent in patients with breast cancer (4/17, 23.5% compared with 5/62, 8.1% overall). Of 14 evaluable patients with breast cancer 3 had partial responses (PR), all anthracycline-naive patients. In 26 evaluable patients with NSCLC, 3 chemotherapy-naive patients had PR. In contrast, none of the 16 evaluable patients with colorectal cancer responded. Imaging of 16 patients (5 with breast cancer, 6 NSCLC, 5 colorectal cancer) showed obvious tumour accumulation in 2 metastatic breast cancers, although unfortunately no images were obtained from patients who responded. These results show 6/62 PR with limited side effects, Supporting the concept that polymer-bound therapeutics can have modified and improved anticancer activities and suggesting the approach should be explored further for breast cancer and NSCLC

Trends in Vertebrate Pesticide Use and New Developments: New Zealand Initiatives and International Implications

In New Zealand, sodium fluoroacetate (1080) has been used for vertebrate pest control for several decades. Since the 1990s, some 1080 users have switched to brodifacoum for possum and rodent control because of its ready availability and ease of use. An awareness that field use of brodifacoum results in persistent residues provides the impetus to develop alternatives and provide new tools and greater flexibility. Looking to the future, we seek toxins which increasingly combine “low-residue” characteristics with humaneness, and more selective bait and delivery systems enabling better and more acceptable control of possums, wallabies, mustelids, rodents, feral cats, and rabbits. Experience gained in the 1990s with the introduction of cholecalciferol (Feracol®) and a cyanide pellet (Feratox®), which both kill possums without secondary poisoning, underpins the extension in 2009 of the Feratox® registration to include introduced Dama wallabies. To date, zinc phosphide has not been registered in NZ, despite its field use in Australia and the U.S. and low secondary poisoning risk compared with 1080. Research and registration dossiers are being assessed in 2009-10 for zinc phosphide containing products for possum and rodent control. Registration documents are also being prepared for a combination of cholecalciferol and coumatetralyl to provide a slow-acting alternative to brodifacoum for the field control of possums, rodents, and rabbits with low risk of bio-accumulation. Anticipated timelines for product availability are 2010 (zinc phosphide) and 2011-13 (cholecalciferol and coumatetralyl). Our intention now is to move beyond these conventional rodenticides and develop new vertebrate pesticides. For example, we are pursuing the registration of para-aminopropiophenone (PAPP) for humane control of stoats and feral cats, and a series of related novel toxins and other compounds that target the red blood cell for other pest species including rodents. PAPP products should be available in 2010, subject to registration approvals. New research initiatives in 2010 will increasingly result in a shift in focus to the development of novel rodenticides aided by new international research collaborations