Palsys.org: an open-access taxonomic and stratigraphic database of organic-walled dinoflagellate cysts

It is with great pleasure that we introduce palsys.org (https://palsys.org/genus/, last access: 8 December 2023), a fully open-access taxonomic, stratigraphic and image database of organic-walled dinoflagellate cysts. Palsys.org started as the in-house database of the Laboratory of Palaeobotany and Palynology (LPP) Foundation over 30 years ago. It is now owned by Utrecht University and has been expanded and transformed into a public online platform for use in research and education. Palsys.org includes the taxonomic descriptions of genera and species of organic walled dinoflagellate cysts, from the (often translated) literature, and emendations and synonymy, mainly following Williams et al. (2017) and the stratigraphic calibrations from DINOSTRAT (Bijl, 2022), and has around 25ĝ€¯000 images of species. Here, in this launch paper, we explain the history of the database, present its current functionalities and explain our set-up of the data quality control. We call upon the community to help us keep palsys.org up to date and complete by, for example, by sending additional information, imagery and feedback in general through the platform. Palsys.org brings dinoflagellate micropaleontology in line with the open-science principles of modern academia

Resilient Antarctic monsoonal climate prevented ice growth during the Eocene

Understanding the extreme greenhouse of the Eocene (56-34Ma) is key to anticipating potential future conditions. While providing an end member towards a distant high-emission scenario, the Eocene climate also challenges the different tools at hand to reconstruct such conditions. Besides remaining uncertainty regarding the conditions under which the large-scale glaciation of Antarctica took place, there is poor understanding of how most of the continent remained ice free throughout the Eocene across a wide range of global temperatures. Seemingly contradictory indications of ice and thriving vegetation complicate efforts to explain the Antarctic Eocene climate. We use global climate model simulations to show that extreme seasonality mostly limited ice growth, mainly through high summer temperatures. Without ice sheets, much of the Antarctic continent had monsoonal conditions. Perennially mild and wet conditions along Antarctic coastlines are consistent with vegetation reconstructions, while extreme seasonality over the continental interior promoted intense weathering shown in proxy records. The results can thus explain the coexistence of warm and wet conditions in some regions, with small ice caps forming near the coast. The resilience of the climate regimes seen in these simulations agrees with the longevity of warm Antarctic conditions during the Eocene but also challenges our view of glacial inception

The Eocene-Oligocene boundary climate transition:an Antarctic perspective

Antarctica underwent a complex evolution over the course of the Cenozoic, which influenced the history of the Earth’s climate system. The Eocene-Oligocene boundary is a divide of this history when the ice-free ‘greenhouse world’ transitioned to the ‘icehouse’ with the glaciation of Antarctica. Prior to this, Antarctica experienced warm climates, peaking during Early Eocene when tropical-like conditions existed at the margins of the continent where geological evidence is present. Climate signals in the geological record show that the climate then cooled, but not enough to allow the existence of significant ice until the latest Eocene. Glacial deposits from several areas around the continental margin indicate that ice was present by the earliest Oligocene. This matches the major oxygen isotope positive shift captured by marine records. On land, vegetation was able to persist, but the thermophylic plants of the Eocene were replaced by shrubby vegetation with the southern beech Nothofagus, mosses and ferns, which survived in tundra-like conditions. Coupled climate–ice sheet modelling indicates that changing levels of atmospheric CO2 controlled Antarctica’s climate and the onset of glaciation. Factors such as mountain uplift, vegetation changes, ocean gateway opening and orbital forcing all played a part in cooling the polar climate, but only when CO2 levels reached critical thresholds was Antarctica tipped into an icy glacial world.CE acknowledges funding by the Spanish Ministry of Economy, Industry and Competitivity (grants CTM2017-89711-C2-1/2-P), cofunded by the European Union through FEDER funds. IS was supported by the Australian Research Council Discovery Project 180102280. A.T. Kennedy Asser was supported by NERC funding (grant no. NE/L002434/1) Edward Gasson is funded by the Royal Society. EG is funded by the Royal Society. AS thanks the European Research Council for Consolidator Grant #771497 (SPANC)

Improved Model-Data Agreement With Strongly Eddying Ocean Simulations in the Middle-Late Eocene

Model simulations of past climates are increasingly found to compare well with proxy data at a global scale, but regional discrepancies remain. A persistent issue in modeling past greenhouse climates has been the temperature difference between equatorial and (sub-)polar regions, which is typically much larger in simulations than proxy data suggest. Particularly in the Eocene, multiple temperature proxies suggest extreme warmth in the southwest Pacific Ocean, where model simulations consistently suggest temperate conditions. Here, we present new global ocean model simulations at 0.1° horizontal resolution for the middle-late Eocene. The eddies in the high-resolution model affect poleward heat transport and local time-mean flow in critical regions compared to the noneddying flow in the standard low-resolution simulations. As a result, the high-resolution simulations produce higher surface temperatures near Antarctica and lower surface temperatures near the equator compared to the low-resolution simulations, leading to better correspondence with proxy reconstructions. Crucially, the high-resolution simulations are also much more consistent with biogeographic patterns in endemic-Antarctic and low-latitude-derived plankton, and thus resolve the long-standing discrepancy of warm subpolar ocean temperatures and isolating polar gyre circulation. The results imply that strongly eddying model simulations are required to reconcile discrepancies between regional proxy data and models, and demonstrate the importance of accurate regional paleobathymetry for proxy-model comparisons

Environmental Forcings of Paleogene Southern Ocean Dinoflagellate Biogeography

Despite warm polar climates and low meridional temperature gradients, a number of different high-latitude plankton assemblages were, to varying extents, dominated by endemic species during most of the Paleogene. To better understand the evolution of Paleogene plankton endemism in the high southern latitudes, we investigate the spatiotemporal distribution of the fossil remains of dinoflagellates, i.e., organic-walled cysts (dinocysts), and their response to changes in regional sea surface temperature (SST). We show that Paleocene and early Eocene (∼65–50 Ma) Southern Ocean dinocyst assemblages were largely cosmopolitan in nature but that a distinct switch from cosmopolitan-dominated to endemic-dominated assemblages (the so-called “transantarctic flora”) occurred around the early-middle Eocene boundary (∼50 Ma). The spatial distribution and relative abundance patterns of this transantarctic flora correspond well with surface water circulation patterns as reconstructed through general circulation model experiments throughout the Eocene. We quantitatively compare dinocyst assemblages with previously published TEX86–based SST reconstructions through the early and middle Eocene from a key locality in the southwest Pacific Ocean, ODP Leg 189 Site 1172 on the East Tasman Plateau. We conclude that the middle Eocene onset of the proliferation of the transantarctic flora is not linearly correlated with regional SST records and that only after the transantarctic flora became fully established later in the middle Eocene, possibly triggered by large-scale changes in surface-ocean nutrient availability, were abundances of endemic dinocysts modulated by regional SST variations

Role of Mobility Strategy in moderating the effect Of ERP performance to operational performance: (Study in Indonesian palm oil plantation industries)

Introduction: Inter-observer variability (IOV) in target volume delineation is a well-documented source of geometric uncertainty in radiotherapy. Such variability has not yet been explored in the context of adaptive re-delineation based on imaging data acquired during treatment. We compared IOV in the pre- and mid-treatment setting using expert primary gross tumour volume (GTV) and clinical target volume (CTV) delineations in locoregionally advanced head-and-neck squamous cell carcinoma (HNSCC) and (non-)small cell lung cancer [(N)SCLC]. Material and methods: Five and six observers participated in the HNSCC and (N)SCLC arm, respectively, and provided delineations for five cases each. Imaging data consisted of CT studies partly complemented by FDG-PET and was provided in two separate phases for pre- and mid-treatment. Global delineation compatibility was assessed with a volume overlap metric (the Generalised Conformity Index), while local extremes of IOV were identified through the standard deviation of surface distances from observer delineations to a median consensus delineation. Details of delineation procedures, in particular, GTV to CTV expansion and adaptation strategies, were collected through a questionnaire. Results: Volume overlap analysis revealed a worsening of IOV in all but one case per disease site, which failed to reach significance in this small sample (p-value range .063-.125). Changes in agreement were propagated from GTV to CTV delineations, but correlation could not be formally demonstrated. Surface distance based analysis identified longitudinal target extent as a pervasive source of disagreement for HNSCC. High variability in (N)SCLC was often associated with tumours abutting consolidated lung tissue or potentially invading the mediastinum. Adaptation practices were variable between observers with fewer than half stating that they consistently adapted pre-treatment delineations during treatment. Conclusion: IOV in target volume delineation increases during treatment, where a disparity in institutional adaptation practices adds to the conventional causes of IOV. Consensus guidelines are urgently needed

Pre-treatment radiomic features predict individual lymph node failure for head and neck cancer patients

Background and purpose: To develop and validate a pre-treatment radiomics-based prediction model to identify pathological lymph nodes (pLNs) at risk of failures after definitive radiotherapy in head and neck squamous cell carcinoma patients. Materials and methods: Training and validation cohorts consisted of 165 patients with 558 pLNs and 112 patients with 467 pLNs, respectively. All patients were primarily treated with definitive radiotherapy, with or without systemic treatment. The endpoint was the cumulative incidence of nodal failure. For each pLN, 82 pre-treatment CT radiomic features and 7 clinical features were included in the Cox proportional-hazard analysis. Results: There were 68 and 23 nodal failures in the training and validation cohorts, respectively. Multivariable analysis revealed three clinical features (T-stage, gender and WHO Performance-status) and two radiomic features (Least-axis-length representing nodal size and gray level co-occurrence matrix based - Correlation representing nodal heterogeneity) as independent prognostic factors. The model showed good discrimination with a c-index of 0.80 (0.69–0.91) in the validation cohort, significantly better than models based on clinical features (p < 0.001) or radiomics (p = 0.003) alone. High- and low-risk groups were defined by using thresholds of estimated nodal failure risks at 2-year of 60% and 10%, resulting in positive and negative predictive values of 94.4% and 98.7%, respectively. Conclusion: A pre-treatment prediction model was developed and validated, integrating the quantitative radiomic features of individual lymph nodes with generally used clinical features. Using this prediction model, lymph nodes with a high failure risk can be identified prior to treatment, which might be used to select patients for intensified treatment strategies targeted on individual lymph nodes

Late Cenozoic sea-surface-temperature evolution of the South Atlantic Ocean

At present, a strong latitudinal sea-surface-temperature (SST) gradient of g1/4g€¯16g€¯g exists across the Southern Ocean, maintained by the Antarctic Circumpolar Current (ACC) and a set of complex frontal systems. Together with the Antarctic ice masses, this system has formed one of the most important global climate regulators. The timing of the onset of the ACC system, its development towards modern-day strength and the consequences for the latitudinal SST gradient around the southern Atlantic Ocean are still uncertain. Here we present new TEX86 (TetraEther indeX of tetraethers consisting of 86 carbon atoms)-derived SST records from two sites located east of Drake Passage (south-western South Atlantic) to assist in better understanding two critical time intervals of prominent climate transitions during the Cenozoic: the late Eocene-early Oligocene (Ocean Drilling Program, ODP, Site 696) and Middle-Late Miocene (IODP Site U1536) transitions. Our results show temperate conditions (20-11g€¯g) during the first time interval, with a weaker latitudinal SST gradient (g1/4g€¯8g€¯g) across the Atlantic sector of the Southern Ocean compared to present day. We ascribe the similarity in SSTs between Sites 696 and 511 in the late Eocene-early Oligocene South Atlantic to a persistent, strong subpolar gyre circulation connecting the sites, which can only exist in the absence of a strong throughflow across the Drake Passage. Surprisingly, the southern South Atlantic record Site 696 shows comparable SSTs (g1/4g€¯12-14g€¯g) during both the earliest Oligocene oxygen isotope step (EOIS, g1/4g€¯33.65g€¯Ma) and the Miocene Climatic Optimum (MCO, g1/4g€¯16.5g€¯Ma). Apparently, maximum Oligocene Antarctic ice volume could coexist with warm ice-proximal surface ocean conditions, while at similar ocean temperatures, the Middle Miocene Antarctic ice sheet was likely reduced. Only a few Middle-Late Miocene (discontinuous) high-latitude records exist due to ice advances causing unconformities. Our low-resolution Site U1536 record of southern South Atlantic SSTs cooled to g1/4g€¯5g€¯g during the Middle Miocene Climate Transition (MMCT, 14g€¯Ma), making it the coldest oceanic region in the poorly recorded Antarctic realm and likely the main location for deep-water formation. The already-cold south-western South Atlantic conditions at the MMCT with relatively moderate additional cooling during the Late Miocene contrasts with the profound cooling in the lower latitudes and other sectors of the Southern Ocean due to northward expansion of the Southern Ocean frontal systems

Chronostratigraphic Framework for the IODP Expedition 318 Cores from the Wilkes Land Margin: Constraints for Paleoceanographic Reconstruction

[1] The Integrated Ocean Drilling Program Expedition 318 to the Wilkes Land margin of Antarctica recovered a sedimentary succession ranging in age from lower Eocene to the Holocene. Excellent stratigraphic control is key to understanding the timing of paleoceanographic events through critical climate intervals. Drill sites recovered the lower and middle Eocene, nearly the entire Oligocene, the Miocene from about 17 Ma, the entire Pliocene and much of the Pleistocene. The paleomagnetic properties are generally suitable for magnetostratigraphic interpretation, with well‐behaved demagnetization diagrams, uniform distribution of declinations, and a clear separation into two inclination modes. Although the sequences were discontinuously recovered with many gaps due to coring, and there are hiatuses from sedimentary and tectonic processes, the magnetostratigraphic patterns are in general readily interpretable. Our interpretations are integrated with the diatom, radiolarian, calcareous nannofossils and dinoflagellate cyst (dinocyst) biostratigraphy. The magnetostratigraphy significantly improves the resolution of the chronostratigraphy, particularly in intervals with poor biostratigraphic control. However, Southern Ocean records with reliable magnetostratigraphies are notably scarce, and the data reported here provide an opportunity for improved calibration of the biostratigraphic records. In particular, we provide a rare magnetostratigraphic calibration for dinocyst biostratigraphy in the Paleogene and a substantially improved diatom calibration for the Pliocene. This paper presents the stratigraphic framework for future paleoceanographic proxy records which are being developed for the Wilkes Land margin cores. It further provides tight constraints on the duration of regional hiatuses inferred from seismic surveys of the region

3D Variation in delineation of head and neck organs at risk

<p>Abstract</p> <p>Background</p> <p>Consistent delineation of patient anatomy becomes increasingly important with the growing use of highly conformal and adaptive radiotherapy techniques. This study investigates the magnitude and 3D localization of interobserver variability of organs at risk (OARs) in the head and neck area with application of delineation guidelines, to establish measures to reduce current redundant variability in delineation practice.</p> <p>Methods</p> <p>Interobserver variability among five experienced radiation oncologists was studied in a set of 12 head and neck patient CT scans for the spinal cord, parotid and submandibular glands, thyroid cartilage, and glottic larynx. For all OARs, three endpoints were calculated: the Intraclass Correlation Coefficient (ICC), the Concordance Index (CI) and a 3D measure of variation (3D SD).</p> <p>Results</p> <p>All endpoints showed largest interobserver variability for the glottic larynx (ICC = 0.27, mean CI = 0.37 and 3D SD = 3.9 mm). Better agreement in delineations was observed for the other OARs (range, ICC = 0.32-0.83, mean CI = 0.64-0.71 and 3D SD = 0.9-2.6 mm). Cranial, caudal, and medial regions of the OARs showed largest variations. All endpoints provided support for improvement of delineation practice.</p> <p>Conclusions</p> <p>Variation in delineation is traced to several regional causes. Measures to reduce this variation can be: (1) guideline development, (2) joint delineation review sessions and (3) application of multimodality imaging. Improvement of delineation practice is needed to standardize patient treatments.</p