Phylogenetic relationships and ecological speciation in the mistletoe Tristerix (Loranthaceae): the influence of pollinators, dispersers, and hosts

Phylogenies can provide valuable information on biotic and abiotic factors associated with speciation. We examined species relationships in Tristerix (Loranthaceae), a genus of 11 species with an Andean distribution from Colombia to Chile. A previous classification divided Tristerix into subgenera Tristerix (two species) and Metastachys (nine species). We tested this classification by generating a molecular phylogeny of the genus using nuclear ribosomal DNA ITS and chloroplast atpB-rbcL intergenic spacer and trnL-F regions. All partitions generally gave congruent trees, thus a combined analysis was conducted. Tristerix was composed of a northern clade (six species) and a southern clade (four species). Tristerix verticillatus and T. penduliflorus (Metastachys) were strongly supported as members of the (southern) subgenus Tristerix clade. Speciation appears to be correlated with the emergence of matorral and cloud forest biomes and is driven by interactions with pollinators and seed dispersers. Tristerix aphyllus is sister to T. corymbosus of the matorral, not to neighboring temperate forest populations, thus rendering the latter species paraphyletic. This ecological speciation event may have occurred in sympatry. Tristerix provides excellent examples of how, during the orography of the Andes, many dynamic and interacting ecological factors have influenced their speciation

Seed dispersal by birds in a temperate forest of southern South America: : who disperses to whom?

Un gran número de plantas depende de animales mutualistas para la dispersión de sus semillas, tarea principalmente realizada por aves que ingieren los frutos y defecan o regurgitan las semillas en forma intacta. El Bosque Templado de Sudamérica Austral (BTSA) se diferencia de otros biomas boscosos templados por poseer una gran proporción de plantas leñosas (~60% de los géneros) que producen frutos carnosos. Estudiamos las interacciones entre plantas y aves dispersoras en un bosque mésico dominado por Nothofagus dombeyi en la Reserva Municipal de Llao-Llao, Argentina (41° 00’S; 71°30´O), cerca del extremo oriental del BTSA. Las aves fueron capturadas utilizando ocho redes de niebla, y muestreadas por avistaje y sonido en cinco estaciones de conteo durante dos estaciones de fructificación. La dieta de las aves capturadas fue estimada mediante el lavado del tracto digestivo. Se estimó la disponibilidad de frutos carnosos en el área de estudio y se realizaron registros de la fenología de fructificación de las especies de plantas leñosas. Se capturaron un total de 296 individuos de 12 especies de aves. Restos de frutos carnosos y semillas fueron encontrados en sólo dos especies, una migrante, Elaenia albiceps, y otra residente, Turdus falcklandii. Estos frutos pertenecieron a ocho de las nueve especies de plantas leñosas productoras de frutos carnosos presentes en el bosque. Adicionalmente, las dos especies de aves fueron comunes en el área de estudio durante la estación de fructificación, representando el 52% y 9% de todas las capturas y el 35% y 4% en las estaciones de conteo, respectivamente. Resultados de un estudio similar en Chiloé, Chile, concuerdan en señalar la importancia de E. albiceps y T. falcklandii como especies claves en la dispersión de frutos del BTSA.Many plants depend on animals for seed dispersal, a task carried out mainly by birds that ingest fruits and defecate or regurgitate seeds undamaged. Unlike other temperate forest biomes, the Temperate Forest of Southern South America (TFSA) is characterized by a large proportion of woody plants (~ 60% of genera) producing fleshy fruits. We studied the interactions between plants and bird dispersers in a mesic forest dominated by Nothofagus dombeyi at the Llao-Llao Forest Reserve, Argentina (41°00’S; 71° 30´W), close to the eastern boundary of the TFSA. We sampled birds using eight mist-nets and five sight/sound census stations during two consecutive fruiting seasons (1999 - 2000). We also recorded the phenology and fruit availability of six tree and shrub species. Gut content analysis was used to determine which fruits were consumed by the dispersers. Through the two sampling methods, we surveyed a total of 23 bird species occurring in the study area. We captured a total of 296 birds belonging to 12 species. We found evidence of fleshy fruit consumption only in two species, Elaenia albiceps and Turdus falcklandii, that consumed fruits and defecated seeds of eight from the nine fleshy-fruited plant species locally present. These two bird species were common in the forest during the fruiting season accounting for 52% and 9% of all mist-net captures and 35% and 4% of all sight/sound censuses, respectively. Other birds consumed fruit or seeds (without dispersing them), insects, and/or small vertebrates. Phenological records indicated that most plant species bear ripe fruit during January and February. The most important fleshy-fruited plants in the area were Aristotelia maqui and Tristerix corymbosus; the latter dispersed by a marsupial. Results presented here, together with a similar study carried out in Chiloé, stress the importance of E. albiceps and T. falcklandii as key mutualists throughout the TFSA

The introduced silver Pheasant (Lophura Nycthemera) in Patagonia Abundance, group structure, activity patterns and association to human disturbance

Los fasiánidos son uno de los grupos de aves introducidas con mayor impacto en los ecosistemas nativos. En la Patagonia varias especies de fasiánidos están establecidas o en proceso de establecimiento, por lo que es relevante conocer sus impactos sobre los ecosistemas. El Faisán Plateado (Lophura nycthemera) fue introducido en Isla Victoria en la década de 1950 y se estableció exitosamente en toda la isla. El objetivo de este trabajo es estudiar la población de esta especie en Isla Victoria en términos de abundancia y su asociación con el disturbio humano como un primer paso para conocer su impacto potencial en el ecosistema. Se realizaron capturas fotográficas mediante fototrampeo y observaciones directas en transectas lineales ubicadas en áreas con niveles alto y bajo de disturbio humano. Con los datos de las capturas fotográficas se estimó un índice de abundancia relativa para comparar el uso de hábitat entre las dos áreas. Se utilizó la técnica de muestreo a distancia para estimar la densidad poblacional a partir de las observaciones directas. El Faisán Plateado usó más las áreas con un alto nivel de disturbio, lo que sugiere que la presencia de hábitats modificados podría facilitar su establecimiento y dispersión en la Patagonia. Las densidades poblacionales, tanto en las áreas con alto como con bajo nivel de disturbio, fueron mayores que las reportadas en su área de distribución nativa, mostrando que esta especie ha tenido un gran éxito en Isla Victoria. La alta abundancia, junto con características distintivas tales como el gran tamaño, los hábitos de alimentación y el comportamiento social, pueden moldear las interacciones con las especies nativas e influenciar su impacto sobre las comunidades nativas.Phasianids are one of the groups of introduced birds with highest impact on native ecosystems. In Patagonia several phasianids are established or in process of establishment, thus it is relevant to know their impacts on ecosystems. The Silver Pheasant (Lophura nycthemera) was introduced to Isla Victoria in the 1950’s and successfully established all over the island. The aim of this work is to study the population of this species on Isla Victoria in terms of abundance and association to human disturbance as a first step to know its potential impact in the ecosystem. We conducted camera-trapping and direct observations in linear transects located in highly disturbed and in lowly disturbed areas. Using camera-trapping data we estimated an index of relative abundance to compare habitat use between areas. We used the distance-sampling approach to estimate population density with the data from direct observations. The Silver Pheasant used much more frequently areas with a high level of disturbance, suggesting that the presence of disturbed habitats could facilitate establishment and spread of this species in Patagonia. Population densities in areas with high and with low levels of disturbance were higher than those reported from the native distribution area, showing that the Silver Pheasant had a great success on Isla Victoria. The high abundance, together with distinctive characteristics such as a large body size, foraging habits and social behaviour can shape the interactions with native species and influence its impact on native communities

The ecology and evolution of the monito del monte, a relict species from the southern South America temperate forests

The arboreal marsupial monito del monte (genus Dromiciops, with two recognized species) is a paradigmatic mammal. It is the sole living representative of the order Microbiotheria, the ancestor lineage of Australian marsupials. Also, this marsupial is the unique frugivorous mammal in the temperate rainforest, being the main seed disperser of several endemic plants of this ecosystem, thus acting as keystone species. Dromiciops is also one of the few hibernating mammals in South America, spending half of the year in a physiological dormancy where metabolism is reduced to 10% of normal levels. This capacity to reduce energy expenditure in winter contrasts with the enormous energy turnover rate they experience in spring and summer. The unique life history strategies of this living Microbiotheria, characterized by an alternation of life in the slow and fast lanes, putatively represent ancestral traits that permitted these cold-adapted mammals to survive in this environment. Here, we describe the ecological role of this emblematic marsupial, summarizing the ecophysiology of hibernation and sociality, updated phylogeographic relationships, reproductive cycle, trophic relationships, mutualisms, conservation, and threats. This marsupial shows high densities, despite presenting slow reproductive rates, a paradox explained by the unique characteristics of its three-dimensional habitat. We finally suggest immediate actions to protect these species that may be threatened in the near future due to habitat destruction and climate change.Fil: Fontúrbel, Francisco E.. Pontificia Universidad Católica de Valparaíso; ChileFil: Franco, Lida M.. Universidad de Ibagué; ColombiaFil: Bozinovic, Francisco. Pontificia Universidad Católica de Chile; ChileFil: Quintero Galvis, Julian F.. Universidad Austral de Chile; ChileFil: Mejías, Carlos. Universidad Austral de Chile; ChileFil: Amico, Guillermo Cesar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Vazquez, Miriam Soledad. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Sabat, Pablo. Universidad de Chile; ChileFil: Sánchez Hernández, Juan C.. Universidad de Castilla-La Mancha; EspañaFil: Watson, David M.. Charles Sturt University; AustraliaFil: Saenz Agudelo, Pablo. Universidad Austral de Chile; ChileFil: Nespolo, Roberto F.. Universidad Austral de Chile; Chil

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study

Background Huntington's disease is caused by a CAG repeat expansion in the huntingtin gene, HTT. Age at onset has been used as a quantitative phenotype in genetic analysis looking for Huntington's disease modifiers, but is hard to define and not always available. Therefore, we aimed to generate a novel measure of disease progression and to identify genetic markers associated with this progression measure. Methods We generated a progression score on the basis of principal component analysis of prospectively acquired longitudinal changes in motor, cognitive, and imaging measures in the 218 indivduals in the TRACK-HD cohort of Huntington's disease gene mutation carriers (data collected 2008–11). We generated a parallel progression score using data from 1773 previously genotyped participants from the European Huntington's Disease Network REGISTRY study of Huntington's disease mutation carriers (data collected 2003–13). We did a genome-wide association analyses in terms of progression for 216 TRACK-HD participants and 1773 REGISTRY participants, then a meta-analysis of these results was undertaken. Findings Longitudinal motor, cognitive, and imaging scores were correlated with each other in TRACK-HD participants, justifying use of a single, cross-domain measure of disease progression in both studies. The TRACK-HD and REGISTRY progression measures were correlated with each other (r=0·674), and with age at onset (TRACK-HD, r=0·315; REGISTRY, r=0·234). The meta-analysis of progression in TRACK-HD and REGISTRY gave a genome-wide significant signal (p=1·12 × 10−10) on chromosome 5 spanning three genes: MSH3, DHFR, and MTRNR2L2. The genes in this locus were associated with progression in TRACK-HD (MSH3 p=2·94 × 10−8 DHFR p=8·37 × 10−7 MTRNR2L2 p=2·15 × 10−9) and to a lesser extent in REGISTRY (MSH3 p=9·36 × 10−4 DHFR p=8·45 × 10−4 MTRNR2L2 p=1·20 × 10−3). The lead single nucleotide polymorphism (SNP) in TRACK-HD (rs557874766) was genome-wide significant in the meta-analysis (p=1·58 × 10−8), and encodes an aminoacid change (Pro67Ala) in MSH3. In TRACK-HD, each copy of the minor allele at this SNP was associated with a 0·4 units per year (95% CI 0·16–0·66) reduction in the rate of change of the Unified Huntington's Disease Rating Scale (UHDRS) Total Motor Score, and a reduction of 0·12 units per year (95% CI 0·06–0·18) in the rate of change of UHDRS Total Functional Capacity score. These associations remained significant after adjusting for age of onset. Interpretation The multidomain progression measure in TRACK-HD was associated with a functional variant that was genome-wide significant in our meta-analysis. The association in only 216 participants implies that the progression measure is a sensitive reflection of disease burden, that the effect size at this locus is large, or both. Knockout of Msh3 reduces somatic expansion in Huntington's disease mouse models, suggesting this mechanism as an area for future therapeutic investigation

Adquisición de carbono en frutos de color verde del muérdago Tristerix corymbosus (Loranthaceae) Carbon acquisition in green fruits of Tristerix corymbosus (Loranthaceae)

El color verde de los frutos maduros podría atribuirse a la capacidad de adquirir carbono mediante fotosíntesis, lo cual disminuye los costos reproductivos e incrementa la recompensa nutritiva para los dispersores de semillas. En el muérdago Tristerix corymbosus (Loranthaceae) el color de los frutos maduros varía según el bioma: en el matorral chileno los frutos son amarillos mientras que en el bosque templando son verdes. Nuestro objetivo fue determinar si el color de los frutos se relacionaba con la capacidad de ganar carbono vía fotosíntesis y si esta capacidad variaba con la madurez y el bioma. Realizamos mediciones fisiológicas en plantas provenientes de poblaciones de cada bioma. Los frutos, tanto inmaduros como maduros de cada bioma no mostraron adquisición neta de carbono; las hojas mostraron actividad fotosintética, éstas poseen estomas en ambas caras y los frutos carecen de ellos. Estos resultados permiten descartar la hipótesis de que el color verde de los frutos de T. corymbosus se encuentra asociado a la adquisición neta de carbono vía fotosíntesis y mantiene la necesidad de indagación de otras hipótesis sobre la variación del color de los frutos entre biomas.In some species fruits are green when they are ripe. This can be attributed to the ability to acquire carbon via photosynthesis, which reduces reproductive costs and increases nutritional reward for seed dispersers. The color of mature fruits of the mistletoe Tristerix corymbosus (Loranthaceae) differ between biomes. In the Chilean matorral ripe fruits are yellow while in the temperate forest are green. Our objective was to determine whether or not fruits photosynthesize and if this ability varied with maturity stage and biome. We performed physiological measurements in plants from populations of each contrasting biome. Fruits did not denote carbon acquisition, regardless the biome or maturity stage. Leaves showed photosynthetic activity, they are amphistomatic, but fruits lacked stomata. These results prove false the hypothesis that the green color at maturity is associated to the ability to acquire carbon via photosynthesis, allowing to persevere in inquiring alternative hypotheses to explain fruit color variation in T. corymbosus

Population structure and phylogeography of the mistletoes<i>Tristerix corymbosus</i>and<i>T. aphyllus</i>(Loranthaceae) using chloroplast DNA sequence variation

The mistletoeTristerix corymbosus(Loranthaceae) is present in the temperate forest and Chilean matorral biomes of Chile and northwest Patagonia. The closely related cactus‐specific species,T. aphyllus, occurs only in the matorral biome. The population structure of these mistletoes was examined to determine whether the distribution of haplotypes corresponds mostly to geographic zone, biome, or other biotic factors. Samples from 108 individuals in 26 localities ofT. corymbosusand 13 individuals in four localities ofT. aphylluswere collected. Sequences were obtained from two chloroplast genome regions: theatpB‐rbcLspacer and thetrnL‐Fregion. Haplotypes were analyzed using parsimony and Bayesian trees as well as parsimony networks. All methods placed the haplotypes in four clades, one of which corresponded toT. aphyllusand the others toT. corymbosus. WithinT. corymbosus, the different clades did not correlate with biome, geographical region, host, or any apparent morphological feature of the mistletoe. The morphologically distinct cactus parasiteT. aphylluslikely arose in sympatry from an unspecialized tree parasite,T. corymbosus, after a host switch. The present day haplotype distribution is complex and resulted from post‐glaciation migrations from multiple Pleistocene refugia