Modeling the Role of the Cell Cycle in Regulating Proteus mirabilis Swarm-Colony Development

We present models and computational results which indicate that the spatial and temporal regularity seen in Proteus mirabilis swarm-colony development is largely an expression of a sharp age of dedifferentiation in the cell cycle from motile swarmer cells to immotile dividing cells (also called swimmer or vegetative cells.) This contrasts strongly with reaction-diffusion models of Proteus behavior that ignore or average out the age structure of the cell population and instead use only density-dependent mechanisms. We argue the necessity of retaining the explicit age structure, and suggest experiments that may help determine the underlying mechanisms empirically. Consequently, we advocate Proteus as a model organism for a multiscale understanding of how and to what extent the life cycle of individual cells affects the macroscopic behavior of a biological system

The three- and four-nucleon systems from chiral effective field theory

Recently developed chiral nucleon-nucleon (NN) forces at next-to-leading order (NLO) that describe NN phase shifts up to about 100 MeV fairly well have been applied to 3N and 4N systems. Faddeev-Yakubovsky equations have been solved rigorously. The chiral NLO forces depend on a momentum cut-off \Lambda lying between 540-600 MeV/c. The resulting 3N and 4N binding energies are in the same range as found using standard NN potentials. In additon, low-energy 3N scattering observables are very well reproduced like for standard NN forces. Surprisingly, the long standing A_y-puzzle is resolved at NLO. The cut-off dependence of the scattering observables is rather mild.Comment: 4 pp, revtex, 3 figure

Theory of periodic swarming of bacteria: application to Proteus mirabilis

The periodic swarming of bacteria is one of the simplest examples for pattern formation produced by the self-organized collective behavior of a large number of organisms. In the spectacular colonies of Proteus mirabilis (the most common species exhibiting this type of growth) a series of concentric rings are developed as the bacteria multiply and swarm following a scenario periodically repeating itself. We have developed a theoretical description for this process in order to get a deeper insight into some of the typical processes governing the phenomena in systems of many interacting living units. All of our theoretical results are in excellent quantitative agreement with the complete set of available observations.Comment: 11 pages, 8 figure

Population Dynamics and Non-Hermitian Localization

We review localization with non-Hermitian time evolution as applied to simple models of population biology with spatially varying growth profiles and convection. Convection leads to a constant imaginary vector potential in the Schroedinger-like operator which appears in linearized growth models. We illustrate the basic ideas by reviewing how convection affects the evolution of a population influenced by a simple square well growth profile. Results from discrete lattice growth models in both one and two dimensions are presented. A set of similarity transformations which lead to exact results for the spectrum and winding numbers of eigenfunctions for random growth rates in one dimension is described in detail. We discuss the influence of boundary conditions, and argue that periodic boundary conditions lead to results which are in fact typical of a broad class of growth problems with convection.Comment: 19 pages, 11 figure

N-d scattering above the deuteron breakup threshold

The complex Kohn variational principle and the (correlated) Hyperspherical Harmonics technique are applied to study the N--d scattering above the deuteron breakup threshold. The configuration with three outgoing nucleons is explicitly taken into account by solving a set of differential equations with outgoing boundary conditions. A convenient procedure is used to obtain the correct boundary conditions at values of the hyperradius $\approx 100$ fm. The inclusion of the Coulomb potential is straightforward and does not give additional difficulties. Numerical results have been obtained for a simple s-wave central potential. They are in nice agreement with the benchmarks produced by different groups using the Faddeev technique. Comparisons are also done with experimental elastic N--d cross section at several energies.Comment: LaTeX, 13 pages, 3 figure

Three-Nucleon Forces from Chiral Effective Field Theory

We perform the first complete analysis of nd scattering at next-to-next-to-leading order in chiral effective field theory including the corresponding three-nucleon force and extending our previous work, where only the two-nucleon interaction has been taken into account. The three-nucleon force appears first at this order in the chiral expansion and depends on two unknown parameters. These two parameters are determined from the triton binding energy and the nd doublet scattering length. We find an improved description of various scattering observables in relation to the next-to-leading order results especially at moderate energies (E_lab = 65 MeV). It is demonstrated that the long-standing A_y-problem in nd elastic scattering is still not solved by the leading 3NF, although some visible improvement is observed. We discuss possibilities of solving this puzzle. The predicted binding energy for the alpha-particle agrees with the empirical value.Comment: 36 pp, 20 figure

The cross section minima in elastic Nd scattering: a ``smoking gun'' for three nucleon force effects

Neutron-deuteron elastic scattering cross sections are calculated at different energies using modern nucleon-nucleon interactions and the Tucson-Melbourne three-nucleon force adjusted to the triton binding energy. Predictions based on NN forces only underestimate nucleon-deuteron data in the minima at higher energies starting around 60 MeV. Adding the three-nucleon forces fills up those minima and reduces the discrepancies significantly.Comment: 11 pages, 6 figure

Micro-patterned surfaces that exploit stigmergy to inhibit biofilm expansion

Twitching motility is a mode of surface translocation that is mediated by the extension and retraction of type IV pili and which, depending on the conditions, enables migration of individual cells or can manifest as a complex multicellular collective behavior that leads to biofilm expansion. When twitching motility occurs at the interface of an abiotic surface and solidified nutrient media, it can lead to the emergence of extensive self-organized patterns of interconnected trails that form as a consequence of the actively migrating bacteria forging a furrow network in the substratum beneath the expanding biofilm. These furrows appear to direct bacterial movements much in the same way that roads and footpaths coordinate motor vehicle and human pedestrian traffic. Self-organizing systems such as these can be accounted for by the concept of stigmergy which describes self-organization that emerges through indirect communication via persistent signals within the environment. Many bacterial communities are able to actively migrate across solid and semi-solid surfaces through complex multicellular collective behaviors such as twitching motility and flagella-mediated swarming motility. Here, we have examined the potential of exploiting the stigmergic behavior of furrow-mediated trail following as a means of controlling bacterial biofilm expansion along abiotic surfaces. We found that incorporation of a series of parallel micro-fabricated furrows significantly impeded active biofilm expansion by Pseudomonas aeruginosa and Proteus vulgaris. We observed that in both cases bacterial movements tended to be directed along the furrows. We also observed that narrow furrows were most effective at disrupting biofilm expansion as they impeded the ability of cells to self-organize into multicellular assemblies required for escape from the furrows and migration into new territory. Our results suggest that the implementation of micro-fabricated furrows that exploit stigmergy may be a novel approach to impeding active biofilm expansion across abiotic surfaces such as those used in medical and industrial settings