Electron-impact ionization cross sections of small molecules containing Fe and Cr *

J R acknowledges the PhD scholarship Grant PD/BD/142846/2018, and together with P L V, the Research Grants CEFITEC (UIDB/00068/2020) and PTDC/FISAQM/31281/2017 from the Portuguese National Funding Agency FCT. This work was also supported by the Radiation Biology and Biophysics Doctoral Training Programme (RaBBiT, PD/00193/2012); UCIBIO (UIDB/04378/2020). The work has partially been carried out within the framework of the EUROfusion Consortium and received funding from the Euratom research and training programme by Grant Agreement No. 101052200-EUROfusion. The views and opinions expressed herein do not necessarily reflect those of the European Commission. The computational results have been obtained using the HPC infrastructure LEO of the University of Innsbruck.We present the electron-impact ionization cross sections(EICSs) of iron and chromium hydrides, nitrides, and oxides. The motivation of this work stems from the fact that chemical sputtering from a steel surface exposed to a hot plasma can create these molecules which in turn influence the composition and energy balance of the plasma. The latter influence is quantified by the EICS which we derive by using two semi-empirical methods which can be employed in the relevant energy range of 10-1000 eV. They are important molecular properties for plasma- and materials science. We discuss the foundations of the methods and present the cross sections of the high- and low-spin states of the species in their neutral ground states and of their cations.publishersversionpublishe

Electronic structure and reactivity of tirapazamine as a radiosensitizer

Funding Information: We acknowledge that results presented here have been achieved (in part) using the LEO HPC infrastructure of the University of Innsbruck. Funding Information: Open access funding provided by University of Innsbruck and Medical University of Innsbruck. J.R. received the Portuguese National Funding Agency FCT through PhD scholarship grant PD/BD/142846/ 2018, and together with P.L.V., the Research Grants CEFITEC (UIDB/00068/2020) and PTDC/FIS-AQM/31281/2017. This work was also supported by the Radiation Biology and Biophysics Doctoral Training Programme (RaBBiT, PD/00193/2012); UCIBIO (UIDB/04378/2020). Publisher Copyright: © 2021, The Author(s).Tirapazamine (TP) has been shown to enhance the cytotoxic effects of ionizing radiation in hypoxic cells, thus making it a candidate for a radiosensitizer. This selective behavior is often directly linked to the abundance of O2. In this paper, we study the electronic properties of TP in vacuum, micro-hydrated from one up to three molecules of water and embedded in a continuum of water. We discuss electron affinities, charge distribution, and bond dissociation energies of TP, and find that these properties do not change significantly upon hydration. In agreement with its large electron affinity, and bond breaking triggered by electron attachment requires energies higher than 2.5 eV, ruling out the direct formation of bioactive TP radicals. Our results suggest, therefore, that the selective behavior of TP cannot be explained by a one-electron reduction from a neighboring O2 molecule. Alternatively, we propose that TP’s hypoxic selectivity could be a consequence of O2 scavenging hydrogen radicals.publishersversionpublishe

Electronic state spectroscopy of C₂Cl₄

The VUV spectrum of C2Cl4 is reported in the energy range 3.8-10.8 eV (325-115 nm). Several photoabsorption features are observed for the first time, including a very weak low-lying band which is provisionally attributed to a π → π* triplet transition. Recent ab initio calculations of the molecule’s electronic transitions [Arulmozhiraja et al. J. Chem. Phys. 129 (2008) 174506] provide the basis for the present assignments below 8.5 eV. An extended ndπ series is proposed to account for several higher-energy Rydberg bands. The identification of vibrational structure, dominated by symmetric C=C and CCl2 stretching in excitations from the HOMO, largely agrees with previous spectroscopic studies. The present absolute photoabsorption cross sections cover a wider energy range than the previous measurements and are used to calculate UV photolysis lifetimes of this aeronomic molecule at altitudes between 20 and 50 km

Electron transfer driven decomposition of adenine and selected analogs as probed by experimental and theoretical methods

We report on a combined experimental and theoretical study of electron transfer induced decomposition of adenine and a selection of analogue molecules in collisions with potassium atoms (K). Time-of-flight negative ion mass spectra have been obtained in a wide collision energy range (6–68 eV in the centre-of-mass frame), providing a comprehensive investigation of the fragmentation patterns of purine, adenine, 9-methyl adenine, 6-dimethyl adenine and 2-D adenine. Following our recent communication about selective hydrogen loss from the transient negative ions (TNI) produced in these collisions [T. Dunha et al. J. Chem. Phys. 148, 021101 (2018)], this work focuses on the production of smaller fragment anions. In the low-energy part of the present range, several dissociation channels that are accessible in free electron attachment experiments are absent from the present mass spectra, notably NH2 loss from adenine and 9-methyl adenine. This can be understood in terms of a relatively long transit time of the K+ cation in the vicinity of the TNI tending to enhance the likelihood of intramolecular electron transfer. In this case, the excess energy can be redistributed through the available degrees of freedom inhibiting fragmentation pathways. Ab initio theoretical calculations were performed for 9-methyl adenine (9-mAd) and adenine (Ad) in the presence of a potassium atom and provided a strong basis for the assignment the lowest unoccupied molecular orbitals accessed in the collision process

CNO- formation through selective bond cleavage

H- and CNO- site and bond selectivity formation is shown in the context of atom-molecule collisions.publishersversionpublishe

Bound Electron Enhanced Radiosensitisation of Nimorazole upon Charge Transfer

This novel work reports nimorazole (NIMO) radiosensitizer reduction upon electron transfer in collisions with neutral potassium (K) atoms in the lab frame energy range of 10-400 eV. The negative ions formed in this energy range were time-of-flight mass analyzed and branching ratios were obtained. Assignment of different anions showed that more than 80% was due to the formation of the non-dissociated parent anion NIMO#~ at 226 u and nitrogen dioxide anion NC2- at 46 u. The rich fragmentation pattern revealed that significant collision induced the decomposition of the 4-nitroimidazole ring, as well as other complex internal reactions within the temporary negative ion formed after electron transfer to neutral NIMO. Other fragment anions were only responsible for less than 20% of the total ion yield. Additional information on the electronic state spectroscopy of nimorazole was obtained by recording a K+ energy loss spectrum in the forward scattering direction (9 « 0°), allowing us to determine the most accessible electronic states within the temporary negative ion. Quantum chemical calculations on the electronic structure of NIMO in the presence of a potassium atom were performed to help assign the most significant lowest unoccupied molecular orbitals participating in the collision process. Electron transfer was shown to be a relevant process for nimorazole radiosensitisation through efficient and prevalent non-dissociated parent anion formation.publishersversionpublishe

Novel experimental setup for time-of-flight mass spectrometry ion detection in collisions of anionic species with neutral gas-phase molecular targets

8 págs.; 4 figs.; Open Access funded by Creative Commons Atribution Licence 4.0We report a novel experimental setup for studying collision induced products resulting from the interaction of anionic beams with a neutral gas-phase molecular target. The precursor projectile was admitted into vacuum through a commercial pulsed valve, with the anionic beam produced in a hollow cathode discharge-induced plasma, and guided to the interaction region by a set of deflecting plates where it was made to interact with the target beam. Depending on the collision energy regime, negative and positive species can be formed in the collision region and ions were time-of-flight (TOF) mass-analysed. Here, we present data on O2 precursor projectile, where we show clear evidence of O– and O2 – formation from the hollow cathode source as well as preliminary results on the interaction of these anions with nitromethane, CH3NO2. The negative ions formed in such collisions were analysed using time-of-flight mass spectrometry. The five most dominant product anions were assigned to H–, O–, NO–, CNO– and CH3NO2 –.PLV acknowledges the Portuguese Foundation for Science and Technology (FCT-MEC) through SFRH/BSAB/105792/ 2014 during his sabbatical stay at CSIC, Madrid and the research grants PTDC/FIS-ATO/1832/2012 and UID/FIS/00068/ 2013. FFS acknowledges FCT-MEC through researcher grant IF-FCT IF/00380/2014. We also acknowledge the Spanish Ministerio de Economía y Competitividad (Project No. FIS 2012-31230). Some of this work forms part of the EU/ESF COST Actions CM1401 and CM1301, Our Astro-Chemical History and Chemistry for Electron-Induced Nanofabrication, respectively. LE-G and GG acknowledge the FP7-PEOPLE-2013-ITN research grant “Advanced Radiotherapy, Generated by Exploiting Nanoprocesses and Technologies (ARGENT)”.Peer Reviewe

Threshold behavior in metastable dissociation of multi-photon ionized thymine and uracil

Microsecond-timescale HNCO loss has been observed from single-color multi-photon ionized pyrimidine nucleobases in the gas phase. Photon energy thresholds for the metastable channels have been measured at 5.55 ± 0.02 eV for thymine and 5.57 ± 0.02 eV for uracil. We argue that these results can be attributed to accessing the molecules’ S1 states with additional vibrational energy matching the threshold energy for HNCO loss from the radical cation. Combined with previous photoionization energies, this enables the S1 adiabatic energies to be deduced: 3.67 ± 0.07 eV for thymine and 3.77 ± 0.07 eV for uracil. These values are consistent with recent calculations