Tectonic history of the South Tannuol Fault Zone (Tuva region of the northern Central Asian Orogenic Belt, Russia) : constraints from multi-method geochronology

In this study, we present zircon U/Pb, plagioclase and K-feldspar Ar-40/Ar-39 and apatite fission track (AFT) data along the South Tannuol Fault Zone (STFZ). Integrating geochronology and multi-method thermochronology places constraints on the formation and subsequent reactivation of the STFZ. Cambrian (similar to 510 Ma) zircon U/Pb ages obtained for felsic volcanic rocks date the final stage of STFZ basement formation. Ordovician (similar to 460-450 Ma) zircon U/Pb ages were obtained for felsic rocks along the structure, dating their emplacement and marking post-formational local magmatic activity along the STFZ. Ar-40/Ar-39 stepwise heating plateau-ages (similar to 410-400 Ma, similar to 365 and similar to 340 Ma) reveal Early Devonian and Late Devonian-Mississippian intrusion and/or post-magmatic cooling episodes of mafic rocks in the basement. Permian (similar to 290 Ma) zircon U/Pb age of mafic rocks documents for the first time Permian magmatism in the study area creating prerequisites for revising the spread of Permian large igneous provinces of Central Asia. The AFT dating and Thermal history modeling based on the AFT data reveals two intracontinental tectonic reactivation episodes of the STFZ: (1) a period of Cretaceous-Eocene (similar to 100-40 Ma) reactivation and (2) the late Neogene (from similar to 10 Ma onwards) impulse after a period of tectonic stability during the Eocene-Miocene (similar to 40-10 Ma)

Expression of a quantitative character radius incompletus, temperature effects, and localization of a mobile genetic element Dm-412 in Drosophila melanogaster

International audienc

Molecular characterization of the singed wings locus of Drosophila melanogaster.

BACKGROUND: Hormones frequently guide animal development via the induction of cascades of gene activities, whose products further amplify an initial hormonal stimulus. In Drosophila the transformation of the larva into the pupa and the subsequent metamorphosis to the adult stage is triggered by changes in the titer of the steroid hormone 20-hydroxyecdysone. singed wings (swi) is the only gene known in Drosophila melanogaster for which mutations specifically interrupt the transmission of the regulatory signal from early to late ecdysone inducible genes. RESULTS: We have characterized singed wings locus, showing it to correspond to EG:171E4.2 (CG3095). swi encodes a predicted 68.5-kDa protein that contains N-terminal histidine-rich and threonine-rich domains, a cysteine-rich C-terminal region and two leucine-rich repeats. The SWI protein has a close homolog in D. melanogaster, defining a new family of SWI-like proteins, and is conserved in D. pseudoobscura. A lethal mutation, swit476, shows a severe disruption of the ecdysone pathway and is a C>Y substitution in one of the two conserved CysXCys motifs that are common to SWI and the Drosophila Toll-4 protein. CONCLUSIONS: It is not entirely clear from the present molecular analysis how the SWI protein may function in the ecdysone induced cascade. Currently all predictions agree in that SWI is very unlikely to be a nuclear protein. Thus it probably exercises its control of "late" ecdysone genes indirectly. Apparently the genetic regulation of ecdysone signaling is much more complex then was previously anticipated.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

Fluorescent protein tagging confirms the presence of ribosomal proteins atDrosophilapolytene chromosomes

\ud \ud Most ribosomal proteins (RPs) are stoichiometrically incorporated into ribosomal subunits and play essential roles in ribosome biogenesis and function. However, a number of RPs appear to have non-ribosomal functions, which involve direct association with pre-mRNA and transcription factors at transcription sites. The consensus is that the RPs found at these sites are off ribosomal subunits, but observation that different RPs are usually found together suggests that ribosomal or ribosomal-like subunits might be present. Notably, it has previously been reported that antibodies against 20 different RPs stain the same Pol II transcription sites in Drosophila polytene chromosomes. Some concerns, however, were raised about the specificity of the antibodies. To investigate further whether RPs are present at transcription sites in Drosophila, we have generated several transgenic flies expressing RPs (RpS2, RpS5a, RpS9, RpS11, RpS13, RpS18, RpL8, RpL11, RpL32, and RpL36) tagged with either green or red fluorescent protein. Imaging of salivary gland cells showed that these proteins are, as expected, abundant in the cytoplasm as well as in the nucleolus. However, these RPs are also apparent in the nucleus in the region occupied by the chromosomes. Indeed, polytene chromosome immunostaining of a representative subset of tagged RPs confirms the association with transcribed loci. Furthermore, characterization of a strain expressing RpL41 functionally tagged at its native genomic locus with YFP, also showed apparent nuclear accumulation and chromosomal association, suggesting that such a nuclear localization pattern might be a shared feature of RPs and is biologically important. We anticipate that the transgenes described here should provide a useful research tool to visualize ribosomal subunits in Drosophila tissues and to study the non-ribosomal functions of RPs.\u

Late-Paleozoic emplacement and Meso-Cenozoic reactivation of the southern Kazakhstan granitoid basement

International audienceThe Ili-Balkhash Basin in southeastern Kazakhstan is located at the junction of the actively deforming mountain ranges of western Junggar and the Tien Shan, and is therefore part of the southwestern Central Asian Orogenic Belt. The basement of the Ili-Balkhash area consists of an assemblage of mainly Precambrian microcontinental fragments, magmatic arcs and accretionary complexes. Eight magmatic basement samples (granitoids and tuffs) from the Ili-Balkhash area were dated with zircon U-Pb LA-ICP-MS and yield Carboniferous to late Permian (~ 350-260 Ma) crystallization ages. These ages are interpreted as reflecting the transition from subduction to (post-) collisional magmatism, related to the closure of the Junggar-Balkhash Ocean during the Carboniferous – early Permian and hence, to the final late Paleozoic accretion history of the ancestral Central Asian Orogenic Belt. Apatite fission track (AFT) dating of 14 basement samples (gneiss, granitoids and volcanic tuffs) mainly provides Cretaceous cooling ages. Thermal history modeling based on the AFT data reveals that several intracontinental tectonic reactivation episodes affected the studied basement during the late Mesozoic and Cenozoic. Late Mesozoic reactivation and associated basement exhumation is interpreted as distant effects of the Cimmerian collisions at the southern Eurasian margin and possibly of the Mongol-Okhotsk Orogeny in SE Siberia during the Jurassic – Cretaceous. Following tectonic stability during the Palaeogene, inherited basement structures were reactivated during the Neogene (constrained by Miocene AFT ages of ~ 17–10 Ma). This late Cenozoic reactivation is interpreted as the far-field response of the India-Eurasia collision and reflects the onset of modern mountain building and denudation in southeast Kazakhstan, which seems to be at least partially controlled by the inherited basement architecture

Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster

<p>Abstract</p> <p>Background</p> <p>Despite many efforts, little is known about distribution and interactions of chromatin proteins which contribute to the specificity of chromomeric organization of interphase chromosomes. To address this issue, we used publicly available datasets from several recent Drosophila genome-wide mapping and annotation projects, in particular, those from modENCODE project, and compared molecular organization of 13 interband regions which were accurately mapped previously.</p> <p>Results</p> <p>Here we demonstrate that in interphase chromosomes of <it>Drosophila </it>cell lines, the interband regions are enriched for a specific set of proteins generally characteristic of the "open" chromatin (RNA polymerase II, CHRIZ (CHRO), BEAF-32, BRE1, dMI-2, GAF, NURF301, WDS and TRX). These regions also display reduced nucleosome density, histone H1 depletion and pronounced enrichment for ORC2, a pre-replication complex component. Within the 13 interband regions analyzed, most were around 3-4 kb long, particularly those where many of said protein features were present. We estimate there are about 3500 regions with similar properties in chromosomes of <it>D. melanogaster </it>cell lines, which fits quite well the number of cytologically observed interbands in salivary gland polytene chromosomes.</p> <p>Conclusions</p> <p>Our observations suggest strikingly similar organization of interband chromatin in polytene chromosomes and in chromosomes from cell lines thereby reflecting the existence of a universal principle of interphase chromosome organization.</p

Corto and DSP1 interact and bind to a maintenance element of the Scr Hox gene: understanding the role of Enhancers of trithorax and Polycomb

BACKGROUND: Polycomb-group genes (PcG) encode proteins that maintain homeotic (Hox) gene repression throughout development. Conversely, trithorax-group (trxG) genes encode positive factors required for maintenance of long term Hox gene activation. Both kinds of factors bind chromatin regions called maintenance elements (ME). Our previous work has shown that corto, which codes for a chromodomain protein, and dsp1, which codes for an HMGB protein, belong to a class of genes called the Enhancers of trithorax and Polycomb (ETP) that interact with both PcG and trxG. Moreover, dsp1 interacts with the Hox gene Scr, the DSP1 protein is present on a Scr ME in S2 cells but not in embryos. To understand better the role of ETP, we addressed genetic and molecular interactions between corto and dsp1. RESULTS: We show that Corto and DSP1 proteins co-localize at 91 sites on polytene chromosomes and co-immunoprecipitate in embryos. They interact directly through the DSP1 HMG-boxes and the amino-part of Corto, which contains a chromodomain. In order to search for a common target, we performed a genetic interaction analysis. We observed that corto mutants suppressed dsp1(1 )sex comb phenotypes and enhanced Antp(Scx )phenotypes, suggesting that corto and dsp1 are simultaneously involved in the regulation of Scr. Using chromatin immunoprecipitation of the Scr ME, we found that Corto was present on this ME both in Drosophila S2 cells and in embryos, whereas DSP1 was present only in S2 cells. CONCLUSION: Our results reveal that the proteins Corto and DSP1 are differently recruited to a Scr ME depending on whether the ME is active, as seen in S2 cells, or inactive, as in most embryonic cells. The presence of a given combination of ETPs on an ME would control the recruitment of either PcG or TrxG complexes, propagating the silenced or active state

Tectonic history of the Kyrgyz South Tien Shan (Atbashi-Inylchek) suture zone : the role of inherited structures during deformation-propagation

Multimethod chronology was applied on intrusives bordering the Kyrgyz South Tien Shan suture (STSs) to decipher the timing of (1) formation and amalgamation of the suturing units and (2) intracontinental deformation that built the bordering mountain ranges. Zircon U/Pb data indicate similarities between the Tien Shan and Tarim Precambrian crust. Caledonian (similar to 440-410 Ma) and Hercynian (similar to 310-280 Ma) zircon U/Pb ages were found at the edge of the STSs, related to subduction and closure of the Turkestan Ocean and the formation of the suture itself. Permian-Triassic (similar to 280-210 Ma) titanite fission track and zircon (U-Th)/He data record the first signs of exhumation when the STSs evolved into a shear zone and the adjacent Tarim basin started to subside. Low-temperature thermochronological (apatite fission track, zircon and apatite (U-Th)/He) analyses reveal three distinct cooling phases, becoming younger toward the STSs center: (1) Jurassic-Cretaceous cooling ages provide evidence that a Mesozoic South Tien Shan orogen formed as a response to the Cimmerian orogeny; (2) Early Paleogene (similar to 60-45 Ma) data indicate a renewed pulse of STSs reactivation during the Early Cenozoic; (3) Neogene ages constrain the onset of the modern Tien Shan mountain building to the Late Oligocene (similar to 30-25 Ma), which intensified during the Miocene (similar to 10-8 Ma) and Pliocene (similar to 3-2 Ma). The Cenozoic signals may reflect renewed responses to collisions at the southern Eurasian border (i.e., the Kohistan-Dras and India-Eurasia collisions). This progressive rejuvenation of the STSs demonstrates that deformation has not migrated steadily into the forelands, but was focused on pre-existing basement structures