Predicting taxonomic and functional structure of microbial communities in acid mine drainage.

Predicting the dynamics of community composition and functional attributes responding to environmental changes is an essential goal in community ecology but remains a major challenge, particularly in microbial ecology. Here, by targeting a model system with low species richness, we explore the spatial distribution of taxonomic and functional structure of 40 acid mine drainage (AMD) microbial communities across Southeast China profiled by 16S ribosomal RNA pyrosequencing and a comprehensive microarray (GeoChip). Similar environmentally dependent patterns of dominant microbial lineages and key functional genes were observed regardless of the large-scale geographical isolation. Functional and phylogenetic β-diversities were significantly correlated, whereas functional metabolic potentials were strongly influenced by environmental conditions and community taxonomic structure. Using advanced modeling approaches based on artificial neural networks, we successfully predicted the taxonomic and functional dynamics with significantly higher prediction accuracies of metabolic potentials (average Bray-Curtis similarity 87.8) as compared with relative microbial abundances (similarity 66.8), implying that natural AMD microbial assemblages may be better predicted at the functional genes level rather than at taxonomic level. Furthermore, relative metabolic potentials of genes involved in many key ecological functions (for example, nitrogen and phosphate utilization, metals resistance and stress response) were extrapolated to increase under more acidic and metal-rich conditions, indicating a critical strategy of stress adaptation in these extraordinary communities. Collectively, our findings indicate that natural selection rather than geographic distance has a more crucial role in shaping the taxonomic and functional patterns of AMD microbial community that readily predicted by modeling methods and suggest that the model-based approach is essential to better understand natural acidophilic microbial communities

Evaluating free flux flow in low-pinning molybdenum-germanium superconducting films

Vortex dynamics in molybdenum-germanium superconducting films were found to well approximate the unpinned free limit even at low driving forces. This provided an opportunity to empirically establish the intrinsic character of free flux flow and to test in detail the validity of theories for this regime beyond the Bardeen-Stephen approximation. Our observations are in good agreement with the mean-field result of time dependent Ginzburg-Landau theory. PACS: 74.25.Sv,74.25.Wx,74.25.Uv,74.25.Op,74.25.F- Keywords: vortices, fluxon, Larkin, Ovchinnikov, upper critical magnetic fieldComment: This is the final revised version of a paper that is currently in press. It is expected to appear in Phys. Rev. B in 201

Fast and slow shifts of the zonal-mean intertropical convergence zone in response to an idealized anthropogenic aerosol

Previous modeling work showed that aerosol can affect the position of the tropical rain belt, i.e., the intertropical convergence zone (ITCZ). Yet it remains unclear which aspects of the aerosol impact are robust across models, and which are not. Here we present simulations with seven comprehensive atmosphere models that study the fast and slow impacts of an idealized anthropogenic aerosol on the zonal-mean ITCZ position. The fast impact, which results from aerosol atmospheric heating and land cooling before sea-surface temperature (SST) has time to respond, causes a northward ITCZ shift. Yet the fast impact is compensated locally by decreased evaporation over the ocean, and a clear northward shift is only found for an unrealistically large aerosol forcing. The local compensation implies that while models differ in atmospheric aerosol heating, this does not contribute to model differences in the ITCZ shift. The slow impact includes the aerosol impact on the ocean surface energy balance and is mediated by SST changes. The slow impact is an order of magnitude more effective than the fast impact and causes a clear southward ITCZ shift for realistic aerosol forcing. Models agree well on the slow ITCZ shift when perturbed with the same SST pattern. However, an energetic analysis suggests that the slow ITCZ shifts would be substantially more model-dependent in interactive-SST setups due to model differences in clear-sky radiative transfer and clouds. We also discuss implications for the representation of aerosol in climate models and attributions of recent observed ITCZ shifts to aerosol

Therapeutic effects of CD133 + Exosomes on liver function after stroke in type 2 diabetic mice

BACKGROUND AND PURPOSE: Non-alcoholic fatty liver disease (NAFLD) is known to adversely affect stroke recovery. However, few studies investigate how stroke elicits liver dysfunction, particularly, how stroke in type 2 diabetes mellitus (T2DM) exacerbates progression of NAFLD. In this study, we test whether exosomes harvested from human umbilical cord blood (HUCBC) derived CD133 + cells (CD133 + Exo) improves neuro-cognitive outcome as well as reduces liver dysfunction in T2DM female mice. METHODS: Female, adult non-DM and T2DM mice subjected to stroke presence or absence were considered. T2DM-stroke mice were randomly assigned to receive PBS or Exosome treatment group. CD133 + Exo (20 μg/200 μl PBS, i.v.) was administered once at 3 days after stroke. Evaluation of neurological (mNSS, adhesive removal test) and cognitive function [novel object recognition (NOR) test, odor test] was performed. Mice were sacrificed at 28 days after stroke and brain, liver, and serum were harvested. RESULTS: Stroke induces severe and significant short-term and long-term neurological and cognitive deficits which were worse in T2DM mice compared to non-DM mice. CD133 + Exo treatment of T2DM-stroke mice significantly improved neurological function and cognitive outcome indicated by improved discrimination index in the NOR and odor tests compared to control T2DM-stroke mice. CD133 + Exo treatment of T2DM stroke significantly increased vascular and white matter/axon remodeling in the ischemic brain compared to T2DM-stroke mice. However, there were no differences in the lesion volume between non-DM stroke, T2DM-stroke and CD133 + Exo treated T2DM-stroke mice. In T2DM mice, stroke induced earlier and higher TLR4, NLRP3, and cytokine expression (SAA, IL1β, IL6, TNFα) in the liver compared to heart and kidney, as measured by Western blot. T2DM-stroke mice exhibited worse NAFLD progression with increased liver steatosis, hepatocellular ballooning, fibrosis, serum ALT activity, and higher NAFLD Activity Score compared to T2DM mice and non-DM-stroke mice, while CD133 + Exo treatment significantly attenuated the progression of NAFLD in T2DM stroke mice. CONCLUSION: Treatment of female T2DM-stroke mice with CD133 + Exo significantly reduces the progression of NAFLD/NASH and improves neurological and cognitive function compared to control T2DM-stroke mice

Engineering grain boundaries at the 2D limit for the hydrogen evolution reaction

Atom-thin transition metal dichalcogenides (TMDs) have emerged as fascinating materials and key structures for electrocatalysis. So far, their edges, dopant heteroatoms and defects have been intensively explored as active sites for the hydrogen evolution reaction (HER) to split water. However, grain boundaries (GBs), a key type of defects in TMDs, have been overlooked due to their low density and large structural variations. Here, we demonstrate the synthesis of wafer-size atom-thin TMD films with an ultra-high-density of GBs, up to ~1012 cm−2. We propose a climb and drive 0D/2D interaction to explain the underlying growth mechanism. The electrocatalytic activity of the nanograin film is comprehensively examined by micro-electrochemical measurements, showing an excellent hydrogen-evolution performance (onset potential: −25 mV and Tafel slope: 54 mV dec−1), thus indicating an intrinsically high activation of the TMD GBs

Advances in the Study of Black Carbon Effects on Climate

Black carbon (BC) aerosols can strongly absorb solar radiation in very broad spectral wavebands, from the visible to the infrared. As a potential factor contributing to global warming, BC aerosols not only directly change the radiation balance of the earth-atmosphere system, but also indirectly affect global or regional climate by acting as cloud condensation nuclei or ice nuclei to alter cloud microphysical properties. Here, recent progresses in the studies of radiative forcing due to BC and its climate effects are reviewed. The uncertainties in current researches are discussed and some suggestions are provided for future investigations. Zhang, H., and Z. Wang, 2011: Advances in the study of black carbon effects on climate. Adv. Clim. Change Res., 2 (1), doi: 10.3724/SP.J.1248.2011.00023