Phenotypes in phylogeography: Species\u27 traits, environmental variation, and vertebrate diversification

Almost 30 y ago, the field of intraspecific phylogeography laid the foundation for spatially explicit and genealogically informed studies of population divergence. With new methods and markers, the focus in phylogeography shifted to previously unrecognized geographic genetic variation, thus reducing the attention paid to phenotypic variation in those same diverging lineages. Although phenotypic differences among lineages once provided the main data for studies of evolutionary change, the mechanisms shaping phenotypic differentiation and their integration with intraspecific genetic structure have been underexplored in phylogeographic studies. However, phenotypes are targets of selection and play important roles in species performance, recognition, and diversification. Here, we focus on three questions. First, how can phenotypes elucidate mechanisms underlying concordant or idiosyncratic responses of vertebrate species evolving in shared landscapes? Second, what mechanisms underlie the concordance or discordance of phenotypic and phylogeographic differentiation? Third, how can phylogeography contribute to our understanding of functional phenotypic evolution? We demonstrate that the integration of phenotypic data extends the reach of phylogeography to explain the origin and maintenance of biodiversity. Finally, we stress the importance of natural history collections as sources of high-quality phenotypic data that span temporal and spatial axes

The exotic weevil Stenopelmus rufinasus Gyllenhal, 1835 (Coleoptera: Curculionidae) across a "host-free" pond network

The presence of the exotic weevil Stenopelmus rufinasus (Coleoptera: Curculionidae) is closely related to the occurrence of the exotic red water fern, Azolla filiculoides. In this paper, we present the first records of S. rufinasus in Doñana National Park (SW Spain), based on sampling of macroinvertebrates in 91 temporary ponds, including monthly samples of 22 ponds, during two successive years (2005-2007). The exotic weevil was present in 21% of the sampled ponds where the host plant, A. filiculiodes, was not detectable. Because A. filiculoides can reach high densities in an adjacent area of marsh, we suggest that the occurrence of the exotic weevil in these ponds is a consequence of dispersal from nearby marshes. Our study demonstrates that S. rufinasus adults can occur at relatively high densities in ponds where the host plant is not present, suggesting that such apparently “host-free” sites may act as stepping stones for the spread of this speciesLa presencia de la especie de gorgojo exótico Stenopelmus rufinasus (Coleoptera: Curculionidae) está íntimamente rela- cionada con la planta acuática exótica Azolla filiculoides. En este estudio se registró por primera vez la presencia de S. rufinasus en el Parque Nacional de Doñana (SO España) tras realizar un muestreo de macroinvertebrados en 91 lagunas que incluye muestreos mensuales de 22 de las mismas durante dos años consecutivos (2005-2007). El gorgojo exótico estuvo presente en el 21% de las lagunas muestreadas a pesar de que su supuesto hospedador, A. filiculiodes, no fue detectado. Dado que A. filiculiodes puede alcanzar grandes densidades en la marisma adyacente, sugerimos que la presencia del gor- gojo exótico en las lagunas temporales se debe a su dispersión desde la marisma. Este estudio demuestra que individuos adultos de S. rufinasus pueden aparecer con densidades relativamente altas en lagunas donde su hospedador potencial no está presente, lo que sugiere que estos sitios libres de hospedador podrían actuar como zonas de paso para la dispersión de la especiePeer reviewe

Interannual variation in filling season affects zooplankton diversity in Mediterranean temporary ponds

In Mediterranean temporary ponds, the timing of annual flooding is highly variable and depends on heavy seasonal rains. Ponds can flood in the autumn, winter, or spring, and thus the environmental conditions faced by emerging zooplankton can be very different. We performed an experiment in a climatic chamber where we simulated annual variation in natural temperature and light conditions to study how differences in pond-filling season affected zooplankton assemblage composition. We sampled sediments from a temporary pond and placed them in aquariums that were filled with water during three different seasons: autumn (October), winter (January), and spring (March). Zooplankton abundance, species richness, diversity, and assemblage composition differed significantly among treatments, and post-inundation temperature and pH appeared to be the main drivers of these differences. Diversity was highest in the winter treatment. It was lower in the autumn treatment and the spring treatment, and no indicator species were present in the latter. Our results suggest that interannual variability in initial inundation conditions favours the emergence of different species and thus contributes to high species richness in the egg bank. However, climate change and/or groundwater drawdown could delay pond flooding, impoverishing the zooplankton assemblage in the long ter

The census of interstellar complex organic molecules in the Class I hot corino of SVS13-A

We present the first census of the interstellar Complex Organic Molecules (iCOMs) in the low-mass Class I protostar SVS13-A, obtained by analysing data from the IRAM-30m Large Project ASAI (Astrochemical Surveys At IRAM). They consist of an high-sensitivity unbiased spectral survey at the 1mm, 2mm and 3mm IRAM bands. We detected five iCOMs: acetaldehyde (CH$_3$CHO), methyl formate (HCOOCH$_3$), dimethyl ether (CH$_3$OCH$_3$), ethanol (CH$_3$CH$_2$OH) and formamide (NH$_2$CHO). In addition we searched for other iCOMs and ketene (H$_2$CCO), formic acid (HCOOH) and methoxy (CH$_3$O), whose only ketene was detected. The numerous detected lines, from 5 to 37 depending on the species, cover a large upper level energy range, between 15 and 254 K. This allowed us to carry out a rotational diagram analysis and derive rotational temperatures between 35 and 110 K, and column densities between $3\times 10^{15}$ and $1\times 10^{17}$ cm$^{-2}$ on the 0."3 size previously determined by interferometric observations of glycolaldehyde. These new observations clearly demonstrate the presence of a rich chemistry in the hot corino towards SVS13-A. The measured iCOMs abundances were compared to other Class 0 and I hot corinos, as well as comets, previously published in the literature. We find evidence that (i) SVS13-A is as chemically rich as younger Class 0 protostars, and (ii) the iCOMs relative abundances do not substantially evolve during the protostellar phase.Comment: 24 pages, MNRAS in pres

Gene expression varies within and between enzootic and epizootic lineages of Batrachochytrium dendrobatidis (Bd) in the Americas

While much research focus is paid to hypervirulent fungal lineages during emerging infectious disease outbreaks, examining enzootic pathogen isolates can be equally fruitful in delineating infection dynamics and determining pathogenesis. The fungal pathogen of amphibians, Batrachochytrium dendrobatidis (Bd), exhibits markedly different patterns of disease in natural populations, where it has caused massive amphibian declines in some regions, yet persists enzootically in others. Here we compare in vitro gene expression profiles of a panel of Bd isolates representing both the enzootic Bd-Brazil lineage, and the more recently diverged, panzootic lineage, Bd-GPL. We document significantly different lineage-specific and intralineage gene expression patterns, with Bd-Brazil upregulating genes with aspartic-type peptidase activity, and Bd-GPL upregulating CBM18 chitin-binding genes, among others. We also find pronounced intralineage variation in membrane integrity and transmembrane transport ability within our Bd-GPL isolates. Finally, we highlight unexpectedly divergent expression profiles in sympatric panzootic isolates, underscoring microgeographic functional variation in a largely clonal lineage. This variation in gene expression likely plays an important role in the relative pathogenesis and host range of Bd-Brazil and Bd-GPL isolates. Together, our results demonstrate that functional genomics approaches can provide information relevant to studies of virulence evolution within the Bd Glade12413443The authors thank Joyce Longcore for providing the Bd isolates used in this study, Miranda Gray for assistance in the laboratory, Ezra Lencer for feedback on methods, the Cornell Biotechnology Resource Center for sequencing and bioinformatics troubleshooting, and Zamudio lab members for helpful manuscript comments. This work was funded by the National Science Foundation (NSF) (grant DEB 1120249) and the Cornell Center for Vertebrate Genomic

Measuring Transit Signal Recovery in the Kepler Pipeline. III. Completeness of the Q1-Q17 DR24 Planet Candidate Catalogue, with Important Caveats for Occurrence Rate Calculations

With each new version of the Kepler pipeline and resulting planet candidate catalogue, an updated measurement of the underlying planet population can only be recovered with an corresponding measurement of the Kepler pipeline detection efficiency. Here, we present measurements of the sensitivity of the pipeline (version 9.2) used to generate the Q1-Q17 DR24 planet candidate catalog (Coughlin et al. 2016). We measure this by injecting simulated transiting planets into the pixel-level data of 159,013 targets across the entire Kepler focal plane, and examining the recovery rate. Unlike previous versions of the Kepler pipeline, we find a strong period dependence in the measured detection efficiency, with longer (>40 day) periods having a significantly lower detectability than shorter periods, introduced in part by an incorrectly implemented veto. Consequently, the sensitivity of the 9.2 pipeline cannot be cast as a simple one-dimensional function of the signal strength of the candidate planet signal as was possible for previous versions of the pipeline. We report on the implications for occurrence rate calculations based on the Q1-Q17 DR24 planet candidate catalog and offer important caveats and recommendations for performing such calculations. As before, we make available the entire table of injected planet parameters and whether they were recovered by the pipeline, enabling readers to derive the pipeline detection sensitivity in the planet and/or stellar parameter space of their choice.Comment: 8 pages, 5 figures, full electronic version of Table 1 available at the NASA Exoplanet Archive; accepted by ApJ May 2nd, 201

Análisis por elementos finitos de una prótesis transtibial para un ciclista paralímpico

(Eng) Currently, finite element analysis techniques are used to reduce costs in the manufacturing process of sports prostheses. This study primarily focuses on the finite element analysis of a design for a transtibial prosthesis for a paralympic cyclist, integra ting the biomechanics of an athlete with a double leg amputation below the knee with two prostheses categorized before the Union Cycling International (UCI) with a C - 3 disability and the characteristics of the terrain and the dynamic model. The analysis em ploying finite elements aims to evaluate the static and dynamic behavior of the proposed design when subjected to competition in the track - cycling category. As a result of this analysis, mechanical aspects, such as static forces, buckling, frequency, fatig ue, free fall, impact, and aerodynamics, can be evaluated to verify that the design of the proposed transtibial prosthesis meets an adequate aerodynamic profile and its mechanical characteristics are suitable to be used in a high - performance Paralympic cyc ling competition.(Spa) En la actualidad se emplean técnicas de análisis por elementos finitos para reducir costos en el proceso de fabricación de prótesis deportivas. Este estudio particularmente se centra en el análisis por elementos finitos de un diseño para una prótesis transtibial de un ciclista paralímpico, en el que se integra la biomecánica de un atleta con amputación en ambas piernas por debajo de la rodilla, con dos prótesis categorizado ante la Unión Ciclista Internacional (UCI) con una discapacidad de grado C-3, considerando características del terreno y el modelo dinámico. El análisis por medio de elementos finitos tiene como objetivo evaluar el comportamiento estático y dinámico del diseño propuesto cuando se somete a una competencia en la categoría de ciclismo de pista. Como resultado de este análisis, se pueden evaluar aspectos mecánicos como: esfuerzos estáticos, pandeo, frecuencia, fatiga, caída libre, impacto y aerodinámica, permitiendo verificar que el diseño de la prótesis transtibial propuesto cumple con un perfil aerodinámico idóneo y sus características mecánicas para ser utilizada en una competencia de ciclismo paralímpico de alto rendimiento

Chemical shifts and cluster structure

The 2p core-level electron binding energies of size-selected silicon cluster ions have been determined from soft x-ray photoionization efficiency curves. Local chemical shifts and global charging energy contributions to the 2p binding energy can be separated, because core-level and valence-band electron binding energies exhibit the same inverse radius dependence. The experimental 2p binding energy distributions show characteristic size-specific patterns that are well reproduced by the corresponding electronic density of states obtained from density functional theory modeling. These results demonstrate that 2p binding energies in silicon clusters are dominated by initial state effects, i.e., by the interaction with the local valence electron density, and can thus be used to corroborate structural assignments