Influence of bottom topography on integral constraints in zonal flows with parameterized potential vorticity fluxes

An integral constraint for eddy fluxes of potential vorticity (PV), corresponding to global momentum conservation, is applied to two-layer zonal quasi-geostrophic channel flow. This constraint must be satisfied for any type of parameterization of eddy PV fluxes. Bottom topography strongly influence the integral constraint compared to a flat bottom channel. An analytical solution for the mean flow solution has been found by using asymptotic expansion in a small parameter which is the ratio of the Rossby radius to the meridional extent of the channel. Applying the integral constraint to this solution, one can find restrictions for eddy PV transfer coefficients which relate the eddy fluxes of PV to the mean flow. These restrictions strongly deviate from restrictions for the channel with flat bottom topography

NEMO-ICB (v1.0): interactive icebergs in the NEMO ocean model globally configured at eddy-permitting resolution

An established iceberg module, ICB, is used interactively with the Nucleus for European Modelling of the Ocean (NEMO) ocean model in a new implementation, NEMO–ICB (v1.0). A 30-year hindcast (1976–2005) simulation with an eddy-permitting (0.25°) global configuration of NEMO–ICB is undertaken to evaluate the influence of icebergs on sea ice, hydrography, mixed layer depths (MLDs), and ocean currents, through comparison with a control simulation in which the equivalent iceberg mass flux is applied as coastal runoff, a common forcing in ocean models. In the Southern Hemisphere (SH), drift and melting of icebergs are in balance after around 5 years, whereas the equilibration timescale for the Northern Hemisphere (NH) is 15–20 years. Iceberg drift patterns, and Southern Ocean iceberg mass, compare favourably with available observations. Freshwater forcing due to iceberg melting is most pronounced very locally, in the coastal zone around much of Antarctica, where it often exceeds in magnitude and opposes the negative freshwater fluxes associated with sea ice freezing. However, at most locations in the polar Southern Ocean, the annual-mean freshwater flux due to icebergs, if present, is typically an order of magnitude smaller than the contribution of sea ice melting and precipitation. A notable exception is the southwest Atlantic sector of the Southern Ocean, where iceberg melting reaches around 50% of net precipitation over a large area. Including icebergs in place of coastal runoff, sea ice concentration and thickness are notably decreased at most locations around Antarctica, by up to ~ 20% in the eastern Weddell Sea, with more limited increases, of up to ~ 10% in the Bellingshausen Sea. Antarctic sea ice mass decreases by 2.9%, overall. As a consequence of changes in net freshwater forcing and sea ice, salinity and temperature distributions are also substantially altered. Surface salinity increases by ~ 0.1 psu around much of Antarctica, due to suppressed coastal runoff, with extensive freshening at depth, extending to the greatest depths in the polar Southern Ocean where discernible effects on both salinity and temperature reach 2500 m in the Weddell Sea by the last pentad of the simulation. Substantial physical and dynamical responses to icebergs, throughout the global ocean, are explained by rapid propagation of density anomalies from high-to-low latitudes. Complementary to the baseline model used here, three prototype modifications to NEMO–ICB are also introduced and discussed

Fragment Molecular Orbital Molecular Dynamics with the Fully Analytic Energy Gradient

Fragment molecular orbital molecular dynamics (FMO-MD) with periodic boundary conditions is performed on liquid water using the analytic energy gradient, the electrostatic potential point charge approximation, and the electrostatic dimer approximation. Compared to previous FMO-MD simulations of water that used an approximate energy gradient, inclusion of the response terms to provide a fully analytic energy gradient results in better energy conservation in the NVE ensemble for liquid water. An FMO-MD simulation that includes the fully analytic energy gradient and two body corrections (FMO2) gives improved energy conservation compared with a previously calculated FMO-MD simulation with an approximate energy gradient and including up to three body corrections (FMO3)

Optimal nitrogen application rates for three intensively-managed hardwood tree species in the southeastern USA

Forest production can be limited by nutrient and water availability, and tree species are expected to respond differently to fertilization and irrigation. Despite these common expectations, multi-species comparisons are rare, especially ones implementing a range of fertilization rates crossed with irrigation. This study compares the response of three forest hardwood species to numerous nitrogen (N) fertilization levels and water availability using a novel non-replicated technique. A range of N levels was included to determine how N affected the growth response curve, and statistical procedures for comparing these non-linear response functions are presented. We used growth and yield data to calculate the Land Expectation Value (LEV) for these intensive management treatments, and to determine the optimal growing conditions (accounting for tree productivity and grower expenses). To accomplish these objectives, we used a series of cottonwood, sycamore, and sweetgum plots that received a range of N fertilization with or without irrigation. Regression is an economical approach to define treatment responses in large-scale experiments, and we recommend >3 treatment levels so the response of any single plot does not disproportionally influence the line. The non-replicated plots showed a strong positive N response below 150 kg N ha -1 yr -1, beyond which little response was observed. However, different amounts of fertilization were required for the greatest biomass accumulation rate in each tree species. Cottonwood and sycamore growth was optimized with less than 150 kg N ha -1 yr -1 while sweetgum growth was optimized with less than 100 kg N ha -1 yr -1. Results from this experiment should be representative of many of the nutrient-poor soils in the Coastal Plain in the southeastern USA. The LEVs were not positive for any treatment x genotype combination tested when using irrigation or liquid fertilizer, but our analysis showed that several non-irrigated treatments in sycamore and sweetgum did result in positive LEVs when fertilized with granular urea

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Genetic improvement through breeding is one of the key approaches to increasing biomass supply. This paper documents the breeding progress to date for four perennial biomass crops (PBCs) that have high output–input energy ratios: namely Panicum virgatum (switchgrass), species of the genera Miscanthus (miscanthus), Salix (willow) and Populus (poplar). For each crop, we report on the size of germplasm collections, the efforts to date to phenotype and genotype, the diversity available for breeding and on the scale of breeding work as indicated by number of attempted crosses. We also report on the development of faster and more precise breeding using molecular breeding techniques. Poplar is the model tree for genetic studies and is furthest ahead in terms of biological knowledge and genetic resources. Linkage maps, transgenesis and genome editing methods are now being used in commercially focused poplar breeding. These are in development in switchgrass, miscanthus and willow generating large genetic and phenotypic data sets requiring concomitant efforts in informatics to create summaries that can be accessed and used by practical breeders. Cultivars of switchgrass and miscanthus can be seed-based synthetic populations, semihybrids or clones. Willow and poplar cultivars are commercially deployed as clones. At local and regional level, the most advanced cultivars in each crop are at technology readiness levels which could be scaled to planting rates of thousands of hectares per year in about 5 years with existing commercial developers. Investment in further development of better cultivars is subject to current market failure and the long breeding cycles. We conclude that sustained public investment in breeding plays a key role in delivering future mass-scale deployment of PBCs