Nouveaux risques sanitaires et nouveaux enjeux pour le contrôle de la qualité des eaux potables

Le contrôle de la qualité des eaux destinées à la consommation humaine doit s’adapter aux nouveaux enjeux liés à la présence de nombreux nano ou micropolluants et de pathogènes émergents depuis les ressources jusqu’aux points d’usage. Aux besoins déjà classiques de développement de capteurs et de méthodes microbiologiques rapides permettant la surveillance en continu, s’ajoutent la nécessité d’évaluer les effets toxiques des mélanges de molécules en complément des analyses chromatographiques afn de limiter les coûts et de mener une analyse de risque objective. Que ce soit pour la mesure des effets perturbateurs endocriniens ou l’évaluation de l’impact des résidus de médicaments les essais in vitro ou in vivo sont en développement. La pollution croissante des ressources, le développement de la réutilisation des eaux usées et la gestion complexe des réseaux d’eau potable exigent des progrès analytiques pluridisciplinaires à l’interface chimie-biologie

Consensus report: E. coli O104:H4 (HUSEC041) and the potential threat to European water supplies.

Among the 3rd Seminar for PhD students working on Water and Health which was held in Cannes on 27–29 June 2011, experts from a number of universities and research institutes took the opportunity to discuss the emergence of Escherichia coli O104:H4 in Europe. Especially, possible threats for European water suppliers were considered. The consensus is summarized in this report. The main conclusion was that E. coli O104:H4 would not pose a substantial risk to well managed water supplies, especially where regular monitoring of indicator E. coli is negative. However, this may not apply for small and very small water systems which are quite common in Europe. New strategies like the Water Safety Plan approach are needed to protect also small scale drinking water systems and private wells in Europe. Water used in the processing of foods likely to be eaten raw, especially sprouts, should be of drinking water quality

Verifying Access Control in Statecharts

Access control is one of the main security mechanisms for software applications. It ensures that all accesses conform to a predefined access control policy. It is important to check that the access control policy is well implemented in the system. When following an MDD methodology it may be necessary to check this early during the development lifecycle, namely when modeling the application. This paper tackles the issue of verifying access control policies in statecharts. The approach is based on the transformation of a statechart into an Algebraic Petri net to enable checking access control policies and identifying potential inconsistencies with an OrBAC set of access control policies. Our method allows locating the part of the statechart that is causing the problem. The approach has been successfully applied to a Library Management System. Based on our proposal a tool for performing the transformation and localization of errors in the statechart has been implemented

Analyse des résidus de drogues illicites dans les eaux de stations d'épuration (rendements d'élimination et évaluation de l'impact écotoxique. Contribution à l'estimation des consommations)

Les drogues illicites consommées sont éliminées sous forme inchangée ou métabolisée dans les urines et/ou les fèces et rejoignent le réseau d égout. La quantification de ces produits d élimination dans les eaux usées présente un double intérêt : d une part, permettre d évaluer la contamination des milieux naturels par ces composés et d autre part, contribuer à l estimation de la consommation de drogues illicites dans une population dépendant d un même bassin collecteur des eaux usées urbaines. Des méthodes analytiques adaptées à la charge organique complexe des eaux usées ont été développées et validées pour évaluer les niveaux de contamination des affluents et effluents de 26 stations d épuration en France pour dix-sept composés (drogues illicites et métabolites). Les résultats d analyses ont permis d évaluer les taux d élimination de ces composés en fonction des technologies de traitement utilisées dans les stations d épuration. Les concentrations mesurées dans les affluents ont été utilisées pour estimer les consommations de drogues illicites par un calcul en retour et ont montré des différences qualitatives et quantitatives de consommation de stupéfiants entre zones urbaines en France métropolitaine et en Outre-mer. Dans une dernière partie, des études de toxicologie sur un modèle bactérien et des études comportementales sur un modèle animal ont été conduites à des niveaux de concentrations proches des teneurs relevées en eau de surface et aucun effet notable n a été observé.Illicit drugs are metabolized or eliminated unchanged in the urine and/or feces then join the sewer system. The quantification of these products in wastewater disposal has two advantages: firstly, to assess the contamination of the environment and also contribute to the estimation of illicit drug consumption in a catchment. Analytical methods adapted to the complex organic load of wastewater have been developed and validated to assess the levels of contamination of influents and effluents from 26 sewage treatment plants in France for seventeen compounds (illicit drugs and metabolites). The results of the analysis were used to evaluate the elimination of these compounds depending on the treatment technologies used in wastewater treatment plants. Concentrations in the influent were used to estimate the illicit drug consumption by back calculation and showed qualitative and quantitative differences of drug use among urban areas in metropolitan France and overseas. In the last part, toxicology studies on a bacterial model and behavioural studies with an animal model have been conducted with concentration levels close to the levels found in surface water and no significant effect was observed.PARIS11-SCD-Bib. électronique (914719901) / SudocSudocFranceF

Étude de l'applicabilité des POCIS (Polar Organic Chemical Integrative Sampler) au dosage des résidus de médicaments dans les effluents hospitaliers

L évaluation des risques environnementaux et sanitaires liés à la présence de résidus de médicaments dans l environnement, représente un enjeu majeur en particulier au regard de la gestion du cycle des usages de l eau. Les effluents des établissements de soins représentent une source non négligeable de pollution et justifient le développement de techniques spécifiques de mesures des émissions de résidus de médicaments dans leurs eaux usées. Dans le cadre de ces développements de méthode, l'échantillonnage représente une des difficultés majeures car la matrice brute des eaux en sortie des hôpitaux est très chargée en matières organiques, les débits sont extrêmement variables, les sites de prélèvement sont difficiles d'accès et il existe une forte variabilité des dispensations des traitements jour/nuit et semaine/week-ends. Les échantillonneurs intégratifs apparus récemment, offrent une alternative intéressante aux stratégies d échantillonnage existantes, permettant d'effectuer un suivi moyenné sur de longues périodes d'observation associé à une simplicité d'usage et une réduction des coûts. Ce travail porte sur l étude de l applicabilité des échantillonneurs intégratifs POCIS (Polar Organic Chemical Integrative Sampler) au dosage des résidus de médicaments dans les effluents hospitaliers. Ce dispositif a principalement été utilisé dans les eaux de surface et les effluents de STEP et son application dans les eaux usées reste rare. 6 molécules déjà identifiées comme représentatives des grandes familles de médicaments utilisés à l'hôpital (Aténolol, Prednisolone, Méthylprednisolone, Sulfaméthoxazole, Ofloxacine, Kétoprofène) ont été retenues.Les cinétiques d adsorption des molécules sur les POCIS ont été suivies en laboratoire en condition de maitrise des paramètres les plus influents : température, vitesse de l eau, charge en matière organique, colmatage Ce calibrage a pour but de déterminer le coefficient d échantillonnage Rs (L/j) spécifique à chaque molécule et nécessaire au calcul de la concentration dans le milieu d exposition du POCIS. Nous avons observé une augmentation des Rs quand la vitesse de l'eau augmente ou quand la température augmente. Dans les eaux usées, la valeur de Rs est plus faible et la durée de la phase linéaire est réduite comparée à l'eau du robinet. Pour ce type d'application, la période d'exposition ne devra pas dépasser 4 à 5 jours en raison du colmatage des membranes et d'une teneur élevée en particules organiques dissoutes. Après calibrage dans l eau du robinet et dans l eau usée, les POCIS ont été exposés in situ dans un effluent hospitalier pour mesurer les concentrations en 6 molécules ciblées. Cinq ont pu être quantifiées et les concentrations calculées à partir des extraits des POCIS sont concordantes avec celles obtenues par prélèvement direct d un échantillon moyenné d eaux usées. Le facteur limitant réside dans les difficultés d accès au site et la présence de solides dans le collecteur d'eaux usées. Ce travail ouvre des perspectives quant à l'application des POCIS pour les effluents hospitaliers et pourra à terme contribuer à l'acquisition de données pour une meilleure surveillance des rejets.The assessment of the environmental and public health risks due to pharmaceutical residues, is a main issue particularly in the light of water cycle management and water resources. Hospitals are supposed to be a main source of pollution and the assessment of their contribution to the overall pharmaceutical pollution is necessary. Monitoring the pharmaceutical loads in hospital sewage is a great challenge because of the difficulties which have to be overcome to obtain representative samples: high organic content and suspended solids, wastewater flow variations, difficult access to sampling sites, variations of pharmaceutical release throughout the day resulting from hospital activities. An interesting alternative way is to use passive samplers, which allow for the measurement of Time Weighted Average (TWA) concentrations, overcoming many shortcomings of the spot sampling techniques. The aim of this work is to evaluate the applicability of POCIS for the monitoring of pharmaceuticals in hospital wastewater. This tool is mainly used for surface water or WWTP effluent and its application for wastewater sampling remains scarce. This study was conducted on six compounds already selected as representative of some of the main class of pharmaceuticals used at the hospital (Atenolol, Prednisolone, Methylprednisolone, Sulfamethoxazole, Ofloxacin, Ketoprofen). POCIS were calibrated for the analytes of interest in tap water and wastewater in laboratory conditions close to relevant environmental conditions (temperature, flow velocity, fouling). Sampling rates (Rs) were determined and we observed a significant increase with flow velocity and temperature. Whatever the compound, the Rs value was lower in wastewater and the linear phase of uptake was shorter than in tap water. A five-day period was defined as the optimal duration for POCIS exposition in wastewater.POCIS were then deployed in a hospital sewage pipe during four days and the estimated water concentrations were close to those measured in twenty-four hour composite samples, carried out with an autosampler.This work gives encouraging results for the deployment of POCIS in wastewater that could be a useful tool for pharmaceutical pollution management.PARIS11-SCD-Bib. électronique (914719901) / SudocSudocFranceF

Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

Polyploidy has played an important role in evolution across the tree of life but it is still unclear how polyploid lineages may persist after their initial formation. While both common and well-studied in plants, polyploidy is rare in animals and generally less understood. The Australian burrowing frog genus Neobatrachus is comprised of six diploid and three polyploid species and offers a powerful animal polyploid model system. We generated exome-capture sequence data from 87 individuals representing all nine species of Neobatrachus to investigate species-level relationships, the origin and inheritance mode of polyploid species, and the population genomic effects of polyploidy on genus-wide demography. We describe rapid speciation of diploid Neobatrachus species and show that the three independently originated polyploid species have tetrasomic or mixed inheritance. We document higher genetic diversity in tetraploids, resulting from widespread gene flow between the tetraploids, asymmetric inter-ploidy gene flow directed from sympatric diploids to tetraploids, and isolation of diploid species from each other. We also constructed models of ecologically suitable areas for each species to investigate the impact of climate on differing ploidy levels. These models suggest substantial change in suitable areas compared to past climate, which correspond to population genomic estimates of demographic histories. We propose that Neobatrachus diploids may be suffering the early genomic impacts of climate-induced habitat loss, while tetraploids appear to be avoiding this fate, possibly due to widespread gene flow. Finally, we demonstrate that Neobatrachus is an attractive model to study the effects of ploidy on the evolution of adaptation in animals

Étude et développement de la spectroscopie d'émission optique sur plasma induit par laser pour la réalisation d'analyses de terrain (application à l'analyse en ligne de métaux dans les liquides)

La contamination par métaux des eaux est un enjeu de santé publique important. Des contrôles et traitements de plus en plus drastiques sont ainsi effectués sur les eux destinés à la consommation humaine. Il est indispensable, pour cela, de posséder des outils analytiques fiables et sensibles, adaptés aux réglementations existantes et suffisamment souples d'utilisation. La technique de Laser Induced Breakdown Spectroscopy (LIBS), ayant fait ses preuves pour l analyse des solides, y compris dans les explorations exo-terrestres, présente des avantages très intéressants pour les liquides dont, par exemple, sont caractère multi-élémentaire et la possibilité des mesures in-situ de la contamination des eaux par métaux.Un première volet d étude de ce travail de thèse à permis d'étudier les potentialités de la spectroscopie sur plasma induit par laser (LIBS) pour l'analyse des métaux dissous ou en suspensions dans les eaux. Etude qu a permis de constater un effet important lié à la taille des particules lors de l analyse de suspensions. Un deuxième volet consisté à regarder les effets de matrice organique représentée par un acide humique et ceux des minéraux naturels représentés par la bentonite et des particules d alumine. Effets matrice qu ont étais corriges par une normalisation par étalon interne.Metal contamination of water is a major public health issue. Controls and treatments are more drastic and performed on them for human consumption. It is essential for this to possess reliable and sensitive analytical tools adapted to the existing regulations and flexible enough to use. The technique of "Laser Induced Breakdown Spectroscopy" (LIBS), proven for the analysis of solids, including exo-terrestrial explorations, this very interesting advantages for liquids including, for example, are multi-character elementary and the possibility of in-situ measurements of water contamination by metals.A first part of this study thesis allowed to explore the potential (LIBS) for the analysis of dissolved metals or suspensions in water. Study has found an important effect related to the particle size in the analysis of suspensions. A second prong is to look at the effects of organic matrix represented by humic acid and those natural minerals represented by the bentonite and alumina particles. The matrix effect observed was corrected by normalization by internal standard.PARIS11-SCD-Bib. électronique (914719901) / SudocSudocFranceF

Duality properties of Gorringe-Leach equations

In the category of motions preserving the angular momentum's direction, Gorringe and Leach exhibited two classes of differential equations having elliptical orbits. After enlarging slightly these classes, we show that they are related by a duality correspondence of the Arnold-Vassiliev type. The specific associated conserved quantities (Laplace-Runge-Lenz vector and Fradkin-Jauch-Hill tensor) are then dual reflections one of the othe

Whole genome duplication potentiates inter-specific hybridisation and niche shifts in Australian burrowing frogs Neobatrachus

Polyploidy plays an important role in evolution because it can lead to increased genetic complexity and speciation. It also provides an extra copy buffer and increases genetic novelty. While both common and well-studied in plants, polyploidy is rare in animals, and most polyploid animals reproduce asexually. Amphibians represent a dramatic vertebrate exception, with multiple independent sexually reproducing polyploid lineages, but very few cases have been studied in any detail. The Australian burrowing frog genus Neobatrachus is comprised of six diploid and three polyploid species and offers a powerful model animal polyploid system. We generated exome-capture sequence data from 87 individuals representing all nine species of Neobatrachus to investigate species-level relationships, the origin of polyploid species, and the population genomic effects of polyploidy on genus-wide demography. We resolve the phylogenetic relationships among Neobatrachus species and provide further support that the three polyploid species have independent origins. We document higher genetic diversity in tetraploids, resulting from widespread gene flow specifically between the tetraploids, asymmetric inter-ploidy gene flow directed from sympatric diploids to tetraploids, and current isolation of diploid species from each other. We also constructed models of ecologically suitable areas for each species to investigate the impact of climate variation on frogs with differing ploidy levels. These models suggest substantial change in suitable areas compared to past climate, which in turn corresponds to population genomic estimates of demographic histories. We propose that Neobatrachus diploids may be suffering the early genomic impacts of climate-induced habitat loss, while tetraploids appear to be avoiding this fate, possibly due to widespread gene flow into tetraploid lineages specifically. Finally, we demonstrate that Neobatrachus is an attractive model to study the effects of ploidy on evolution of adaptation in animals

Incidence of Sarcoma Histotypes and Molecular Subtypes in a Prospective Epidemiological Study with Central Pathology Review and Molecular Testing

International audienceBACKGROUND: The exact overall incidence of sarcoma and sarcoma subtypes is not known. The objective of the present population-based study was to determine this incidence in a European region (Rhone-Alpes) of six million inhabitants, based on a central pathological review of the cases. METHODOLOGY/PRINCIPAL FINDINGS: From March 2005 to February 2007, pathology reports and tumor blocks were prospectively collected from the 158 pathologists of the Rhone-Alpes region. All diagnosed or suspected cases of sarcoma were collected, reviewed centrally, examined for molecular alterations and classified according to the 2002 World Health Organization classification. Of the 1287 patients screened during the study period, 748 met the criteria for inclusion in the study. The overall crude and world age-standardized incidence rates were respectively 6.2 and 4.8 per 100,000/year. Incidence rates for soft tissue, visceral and bone sarcomas were respectively 3.6, 2.0 and 0.6 per 100,000. The most frequent histological subtypes were gastrointestinal stromal tumor (18%; 1.1/100,000), unclassified sarcoma (16%; 1/100,000), liposarcoma (15%; 0.9/100,000) and leiomyosarcoma (11%; 0.7/100,000). CONCLUSIONS/SIGNIFICANCE: The observed incidence of sarcomas was higher than expected. This study is the first detailed investigation of the crude incidence of histological and molecular subtypes of sarcomas