Distortion in a 7xxx aluminum alloy during liquid phase sintering

The distortion in a sintered 7xxx aluminum alloy, Al-7Zn-2.5Mg-1Cu (wt. pct), has been investigated by sintering three rectangular bars in each batch at 893 K (620 °C) for 0 to 40 minutes in nitrogen, followed by air or furnace cooling. They were placed parallel to each other, equally spaced apart at 2 mm, with their long axes being perpendicular to the incoming nitrogen flow. Pore evolution in each sample during isothermal sintering was examined metallographically. The compositional changes across sample mid-cross section and surface layers were analyzed using energy dispersive X-ray spectroscopy and X-ray photoelectron spectroscopy depth profiling, respectively. The two outer samples bent toward the middle one, while the middle sample was essentially distortion free after sintering. The distortion in the outer samples was a result of differential shrinkage between their outer and inner surfaces during isothermal sintering. The porous outer surface showed an enrichment of oxygen around the large pores as well as lower magnesium and zinc contents than the interior and inner surface of the same sample, while the inner surface was distinguished by the presence of AlN. The differential shrinkage was caused by different oxygen contents in local sintering atmosphere and unbalanced loss of magnesium and zinc between the outer and inner surfaces

Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western Kenya

Large datasets are often not amenable to analysis using traditional single-step approaches. Here, our general objective was to apply imputation techniques, principal component analysis (PCA), elastic net and generalized linear models to a large dataset in a systematic approach to extract the most meaningful predictors for a health outcome. We extracted predictors for Plasmodium falciparum infection, from a large covariate dataset while facing limited numbers of observations, using data from the People, Animals, and their Zoonoses (PAZ) project to demonstrate these techniques: data collected from 415 homesteads in western Kenya, contained over 1500 variables that describe the health, environment, and social factors of the humans, livestock, and the homesteads in which they reside. The wide, sparse dataset was simplified to 42 predictors of P. falciparum malaria infection and wealth rankings were produced for all homesteads. The 42 predictors make biological sense and are supported by previous studies. This systematic data-mining approach we used would make many large datasets more manageable and informative for decision-making processes and health policy prioritization

Inheritance of resistance to bacterial spot in tomato

A herança da resistência do tomateiro (Lycopersicon esculentum) à mancha-bacteriana (Xanthomonas campestris pv. vesicatoria, raça T2) foi estudada, em condições de campo, cruzando-se os genótipos resistentes 'Ohio 8245' e 'Hawaii 7998' com os genótipos suscetíveis 'CNPH 401-08' e 'CNPH 416.81.01.02', em um esquema dialélico desconsiderando-se os recíprocos. Foram obtidas cinco famílias, cada uma constituída por seis gerações: Genitor1, Genitor2, F1, F2 e os retrocruzamentos (RC1 e RC2). A família 'Ohio 8245 ' Hawaii 7998' apresentou menor média para severidade da doença, seguida por 'Hawaii 7998 ' CNPH 416.81.01.02' e 'Ohio 8245 ' CNPH 416.81.01.02', as quais, apresentaram maiores estimativas de herdabilidade e de predição de ganho por seleção. Em todas combinações, a herança da resistência genética à mancha-bacteriana foi do tipo quantitativa, com estimativa do número de genes variando de quatro a oito genes, conforme a família analisada. Foi observada segregação transgressiva nas famílias 'Ohio 8245 ' CNPH 401-08', 'Hawaii 7998 ' CNPH 401-08' e 'Hawaii 7998 ' CNPH 416.81.01.02'. Os efeitos gênicos foram do tipo aditivo para todas as famílias e os dados ajustados ao modelo aditivo-dominante, com o componente aditivo apresentando maior magnitude.The inheritance of resistance to bacterial spot (Xanthomonas campestris pv. vesicatoria, race T2) in tomato (Lycopersicon esculentum) was investigated in a field trial. The genotypes 'Ohio 8245' and 'Hawaii 7998' (resistant), 'CNPH 401-08' and 'CNPH 416.81.01.02' (susceptible) were crossed in a diallel scheme without reciprocals. Each cross was labeled as one family, represented by six different generations: Parent1, Parent2, F1, F2 and Backcrosses to parents (BC1 and BC2). The family 'Ohio 8245 ' Hawaii 7998' presented the lowest disease severity, followed by the family 'Hawaii 7998 ' CNPH 416.81.01.02' and by the family 'Ohio 8245 ' CNPH 416.81.01.02'. These last two families showed both higher broad and narrow sense inheritability estimates and the highest prediction of selection gain. The resistance was found to be quantitative, with four to eight genes involved, depending on the family. Transgressive segregation was observed in the 'Ohio 8245 ' CNPH 401-08', the 'Hawaii 7998 ' CNPH 401-08' and the 'Hawaii 7998 ' CNPH 416.81.01.02' families. The relevance of the additive effects was observed and for all the families the data fitted to additive-dominant model, with the additive component showing greater magnitude

Large-scale sequencing identifies multiple genes and rare variants associated with Crohn's disease susceptibility

Genome-wide association studies (GWASs) have identified hundreds of loci associated with Crohn's disease (CD). However, as with all complex diseases, robust identification of the genes dysregulated by noncoding variants typically driving GWAS discoveries has been challenging. Here, to complement GWASs and better define actionable biological targets, we analyzed sequence data from more than 30,000 patients with CD and 80,000 population controls. We directly implicate ten genes in general onset CD for the first time to our knowledge via association to coding variation, four of which lie within established CD GWAS loci. In nine instances, a single coding variant is significantly associated, and in the tenth, ATG4C, we see additionally a significantly increased burden of very rare coding variants in CD cases. In addition to reiterating the central role of innate and adaptive immune cells as well as autophagy in CD pathogenesis, these newly associated genes highlight the emerging role of mesenchymal cells in the development and maintenance of intestinal inflammation.Large-scale sequence-based analyses identify novel risk variants and susceptibility genes for Crohn's disease, and implicate mesenchymal cell-mediated intestinal homeostasis in disease etiology.Cellular mechanisms in basic and clinical gastroenterology and hepatolog

Highly-parallelized simulation of a pixelated LArTPC on a GPU

The rapid development of general-purpose computing on graphics processing units (GPGPU) is allowing the implementation of highly-parallelized Monte Carlo simulation chains for particle physics experiments. This technique is particularly suitable for the simulation of a pixelated charge readout for time projection chambers, given the large number of channels that this technology employs. Here we present the first implementation of a full microphysical simulator of a liquid argon time projection chamber (LArTPC) equipped with light readout and pixelated charge readout, developed for the DUNE Near Detector. The software is implemented with an end-to-end set of GPU-optimized algorithms. The algorithms have been written in Python and translated into CUDA kernels using Numba, a just-in-time compiler for a subset of Python and NumPy instructions. The GPU implementation achieves a speed up of four orders of magnitude compared with the equivalent CPU version. The simulation of the current induced on 10^3 pixels takes around 1 ms on the GPU, compared with approximately 10 s on the CPU. The results of the simulation are compared against data from a pixel-readout LArTPC prototype