Observer error in sampling a rare plant population

Background: Estimation of abundance in vegetation sampling involving observers is almost always characterised by observer error, although such error is rarely reported. Aims: To quantify observer error in population estimation of the rare plant species Physaria filiformis in Missouri, USA. Methods: The abundance of P. filiformis was estimated within 25-m2 plots by six trained observers with varying experience levels over 10 years. Observers assigned plots to six predefined density classes. A total of 477 plots were estimated annually, and actual counts were conducted on ca. 10% of the plots to assess per cent agreement of estimates with counts. Results: Over a third of the estimates of plant abundance evaluated for accuracy (36.4%) deviated from exhaustive counts. The majority of the misestimates were underestimates by one density class (29.4%). The number and type of misestimates varied systematically with density class. Conclusions: Observer error could be explained to some degree by variation in population density, but not by experience. It appears that inherent differences exist among observers that cannot be entirely compensated for by experience or training. Observer error in this system represents a systematic bias, and can be compensated for by use of correction factors, which would ideally be both density class-dependent and observer-specific

Standardization and quality control in data collection and assessment of threatened plant species

Informative data collection is important in the identification and conservation of rare plant species. Data sets generated by many small-scale studies may be integrated into large, distributed databases, and statistical tools are being developed to extract meaningful information from such databases. A diversity of field methodologies may be employed across smaller studies, however, resulting in a lack of standardization and quality control, which makes integration more difficult. Here, we present a case study of the population-level monitoring of two threatened plant species with contrasting life history traits that require different field sampling methodologies: the limestone glade bladderpod, Physaria filiformis, and the western prairie fringed orchid, Plantanthera praeclara. Although different data collection methodologies are necessary for these species based on population sizes and plant morphology, the resulting data allow for similar inferences. Different sample designs may frequently be necessary for rare plant sampling, yet still provide comparable data. Various sources of uncertainty may be associated with data collection (e.g., random sampling error, methodological imprecision, observer error), and should always be quantified if possible and included in data sets, and described in metadata. Ancillary data (e.g., abundance of other plants, physical environment, weather/climate) may be valuable and the most relevant variables may be determined by natural history or empirical studies. Once data are collected, standard operating procedures should be established to prevent errors in data entry. Best practices for data archiving should be followed, and data should be made available for other scientists to use. Efforts to standardize data collection and control data quality, particularly in small-scale field studies, are imperative to future cross-study comparisons, meta-analyses, and systematic reviews

An Extraordinary Scattered Broad Emission Line in a Type 2 QSO

An infrared-selected, narrow-line QSO has been found to exhibit an extraordinarily broad Halpha emission line in polarized light. Both the extreme width (35,000 km/sec full-width at zero intensity) and 3,000 km/sec redshift of the line centroid with respect to the systemic velocity suggest emission in a deep gravitational potential. An extremely red polarized continuum and partial scattering of the narrow lines at a position angle common to the broad-line emission imply extensive obscuration, with few unimpeded lines of sight to the nucleus.Comment: 4 pages, 1 figure, to appear in the Astrophysical Journal Letter

Optical Spectropolarimetry of Quasi-Stellar Objects Discovered by the Two-Micron All Sky Survey

Highly polarized QSOs discovered in the Two-Micron All Sky Survey (2MASS) have been observed to determine the source(s) of optical polarization in this near-infrared color-selected sample. Broad emission lines are observed in the polarized flux spectra of most objects, and the polarization of the lines is at about the same level and position angle as the continuum. Generally, the continuum is bluer and the broad-line Balmer decrement is smaller in polarized light than for the spectrum of total flux. Narrow emission lines are much less polarized than the broad lines and continuum for all polarized objects. These properties favor scattering by material close to a partially obscured and reddened active nucleus, but exterior to the regions producing the broad-line emission, as the source of polarized flux in 2MASS QSOs. The largely unpolarized narrow-line features require that the electrons or dust polarizing the light be located at distances from the nucleus not much greater than the extent of the narrow emission-line region. In addition to known high-polarization objects, four 2MASS QSOs with AGN spectral types of 1.9 and 2 were observed to search for hidden broad emission-line regions. Broad lines were detected in polarized light for two of these objects, and the polarizing mechanism appears to be the same for these objects as for the highly polarized QSOs in the sample that readily show broad emission lines in their spectra. The observations also show that starlight from the host galaxy contributes a significant amount of optical flux, especially for the narrow-line objects, and support the suggestion that many 2MASS QSOs are measured to have low polarization simply because of dilution of the polarized AGN light by the host galaxy.Comment: 27 pages; 3 tables; 8 figures; Accepted for publication in The Astrophysical Journal (Part 1

Psychosocial factors associated with the mental health of Indigenous children living in high income countries: a systematic review

Indigenous children living in high income countries such as Australia, New Zealand, Canada and the United States of America (USA) are disproportionately affected by mental health problems when compared to their non-Indigenous counterparts. Childhood mental health disorders such as anxiety, depression and externalising behaviours are associated with a range of negative outcomes that are overrepresented in Indigenous communities, including high rates of suicidal ideation and completed suicide. The long-term sequelae of poor childhood mental health is believed to significantly contribute to the many health and social 'gaps' between Indigenous and non-Indigenous populations that occur throughout the lifespan. This systematic review of published evidence aimed to identify modifiable psychosocial risk and protective factors common to Indigenous children living in developed countries. These factors are associated with mental health outcomes typically reflected in school-aged children. The results may inform policy and aid the design of initiatives to improve the mental health of Indigenous children, as well as identifying areas for further research.The research reported in this paper is a project of the Australian Primary Health Care Research Institute which is supported by a grant from the Australian Government Department of Health and Ageing under the Primary Health Care Research Evaluation and Development Strategy

Transient absorption and reshaping of ultrafast XUV light by laser-dressed helium

We present a theoretical study of transient absorption and reshaping of extreme ultraviolet (XUV) pulses by helium atoms dressed with a moderately strong infrared (IR) laser field. We formulate the atomic response using both the frequency-dependent absorption cross section and a time-frequency approach based on the time-dependent dipole induced by the light fields. The latter approach can be used in cases when an ultrafast dressing pulse induces transient effects, and/or when the atom exchanges energy with multiple frequency components of the XUV field. We first characterize the dressed atom response by calculating the frequency-dependent absorption cross section for XUV energies between 20 and 24 eV for several dressing wavelengths between 400 and 2000 nm and intensities up to 10^12 W/cm^2. We find that for dressing wavelengths near 1600 nm, there is an Autler-Townes splitting of the 1s ---> 2p transition that can potentially lead to transparency for absorption of XUV light tuned to this transition. We study the effect of this XUV transparency in a macroscopic helium gas by incorporating the time-frequency approach into a solution of the coupled Maxwell-Schr\"odinger equations. We find rich temporal reshaping dynamics when a 61 fs XUV pulse resonant with the 1s ---> 2p transition propagates through a helium gas dressed by an 11 fs, 1600 nm laser pulse.Comment: 13 pages, 8 figures, 1 table, RevTeX4, revise

Identification of a novel class of autotaxin inhibitors through cross-screening

Three novel series were generated in order to mimic the pharmacophoric features displayed by lead compound AM095, a Lysophosphatidic acid (LPA1) receptor antagonist. Biological evaluation of this array of putative LPA1 antagonists led us to the discovery of three novel series of inhibitors of the ecto-enzyme Autotaxin (ATX), responsible for LPA production in blood, with potencies in the range 1 – 4 μM accompanied with good (> 100 μg/mL) solubility

Building better research partnerships by understanding how Aboriginal health communities perceive and use data: a semi structured interview study

The aim of this study is to describe the perspectives of ACCHS health staff towards data and to identify potential strategies that can maximise the efficient transfer and usage of data collected through collaborative research with the ACCHS, and enhance the capacity to effectively use research data for healthcare improvement and advocacy.The research reported in this paper is a project of the Australian Primary Health Care Research Institute which is supported by a grant from the Australian Government Department of Health and Ageing under the Primary Health Care Research Evaluation and Development Strategy

Superconducting Properties of MgCNi3 Films

We report the magnetotransport properties of thin polycrystalline films of the recently discovered non-oxide perovskite superconductor MgCNi3. CNi3 precursor films were deposited onto sapphire substrates and subsequently exposed to Mg vapor at 700 C. We report transition temperatures (Tc) and critical field values (Hc2) of MgCNi3 films ranging in thickness from 7.5 nm to 100 nm. Films thicker than ~40 nm have a Tc ~ 8 K, and an upper critical field Hc2 ~ 14 T, which are both comparable to that of polycrystalline powders. Hall measurements in the normal state give a carrier density, n =-4.2 x 10^22 cm^-3, that is approximately 4 times that reported for bulk samples.Comment: submitted to PR

Faecal haemoglobin and faecal calprotectin as indicators of bowel disease in patients presenting to primary care with bowel symptoms

OBJECTIVE: In primary care, assessing which patients with bowel symptoms harbour significant disease (cancer, higher-risk adenoma or IBD) is difficult. We studied the diagnostic accuracies of faecal haemoglobin (FHb) and faecal calprotectin (FC) in a cohort of symptomatic patients. DESIGN: From October 2013 to March 2014, general practitioners were prompted to request FHb and FC when referring patients with bowel symptoms to secondary care. Faecal samples were analysed for haemoglobin (EIKEN OC-Sensor io) and calprotectin (BÜHLMANN Calprotectin ELISA). Patients triaged to endoscopy were investigated within 6 weeks. All clinicians and endoscopists were blind to the faecal test results. The diagnostic accuracies of FHb and FC for identification of significant bowel disease were assessed. RESULTS: 1043 patients returned samples. FHb was detectable in 57.6% (median 0.4 µg/g, 95% CI 0.4 to 0.8; range 0–200). FC at 50 µg/g or above was present in 60.0%. 755 patients (54.6% women, median age 64 years (range 16–90, IQR 52–73)) returned samples and completed colonic investigations. 103 patients had significant bowel disease; the negative predictive values of FHb for colorectal cancer, higher-risk adenoma and IBD were 100%, 97.8% and 98.4%, respectively. Using cut-offs of detectable FHb and/or 200 µg/g FC detected two further cases of IBD, one higher-risk adenoma and no additional cancers. CONCLUSIONS: In primary care, undetectable FHb is a good ‘rule-out’ test for significant bowel disease and could guide who requires investigation