Pscroph, a parasitic plant EST database enriched for parasite associated transcripts

BACKGROUND: Parasitic plants in the Orobanchaceae develop invasive root haustoria upon contact with host roots or root factors. The development of haustoria can be visually monitored and is rapid, highly synchronous, and strongly dependent on host factor exposure; therefore it provides a tractable system for studying chemical communications between roots of different plants. DESCRIPTION: Triphysaria is a facultative parasitic plant that initiates haustorium development within minutes after contact with host plant roots, root exudates, or purified haustorium-inducing phenolics. In order to identify genes associated with host root identification and early haustorium development, we sequenced suppression subtractive libraries (SSH) enriched for transcripts regulated in Triphysaria roots within five hours of exposure to Arabidopsis roots or the purified haustorium-inducing factor 2,6 dimethoxybenzoquinone. The sequences of over nine thousand ESTs from three SSH libraries and their subsequent assemblies are available at the Pscroph database . The web site also provides BLAST functions and allows keyword searches of functional annotations. CONCLUSION: Libraries prepared from Triphysaria roots treated with host roots or haustorium inducing factors were enriched for transcripts predicted to function in stress responses, electron transport or protein metabolism. In addition to parasitic plant investigations, the Pscroph database provides a useful resource for investigations in rhizosphere interactions, chemical signaling between organisms, and plant development and evolution

The benefits of interprofessional education 10 years on.

Interprofessional education (IPE) was first conceived in 1973 by a World Health Organization (WHO) expert group in Geneva. WHO member states were then charged with implementing medical education IPE pilot projects and from then to today there has a been a rapid proliferation in the number of publications on the subject. IPE has generated research into its use, conferences specific to IPE, organisations dedicated to it and policy championing it. The authors question whether there has been any major shift in the silos in which different professions might be working. The authors published an article on the benefits of IPE ( Illingworth and Chelvanayagam, 2007 ). Ten years have now passed and many changes have been implemented and experienced in health and social care and therefore a review of the literature is required. Also, it is 7 years since the publication of WHO's report outlining the role of IPE in the preparation of health professionals ( WHO, 2010 ) and, increasingly, UK Government policy champions collaborative and integrated working. The conclusions from the 2007 article acknowledged the development of IPE; however, it highlighted the need for empirical evidence to demonstrate the effectiveness of IPE in service user and carer outcomes. This article will explore whether IPE has achieved the benefits discussed in the previous article and what developments have occurred since it was published

Program for the evaluation of structural reinforced plastic materials at cryogenic temperatures, phase ii annual and fourth quarterly report, 29 jun. 1964 - 30 jun. 1965

Evaluation of procedures, test specimens, and test techniques for application to structural reinforced plastic materials at cryogenic temperature

Vortex Diode Analysis and Testing for Fluoride Salt-Cooled High-Temperature Reactors

Fluidic diodes are presently being considered for use in several fluoride salt-cooled high-temperature reactor designs. A fluidic diode is a passive device that acts as a leaky check valve. These devices are installed in emergency heat removal systems that are designed to passively remove reactor decay heat using natural circulation. The direct reactor auxiliary cooling system (DRACS) uses DRACS salt-to-salt heat exchangers (DHXs) that operate in a path parallel to the core flow. Because of this geometry, under normal operating conditions some flow bypasses the core and flows through the DHX. A flow diode, operating in reverse direction, is-used to minimize this flow when the primary coolant pumps are in operation, while allowing forward flow through the DHX under natural circulation conditions. The DRACSs reject the core decay heat to the environment under loss-of-flow accident conditions and as such are a reactor safety feature. Fluidic diodes have not previously been used in an operating reactor system, and therefore their characteristics must be quantified to ensure successful operation. This report parametrically examines multiple design parameters of a vortex-type fluidic diode to determine the size of diode needed to reject a particular amount of decay heat. Additional calculations were performed to size a scaled diode that could be tested in the Oak Ridge National Laboratory Liquid Salt Flow Loop. These parametric studies have shown that a 152.4 mm diode could be used as a test article in that facility. A design for this diode is developed, and changes to the loop that will be necessary to test the diode are discussed. Initial testing of a scaled flow diode has been carried out in a water loop. The 150 mm diode design discussed above was modified to improve performance, and the final design tested was a 171.45 mm diameter vortex diode. The results of this testing indicate that diodicities of about 20 can be obtained for diodes of this size. Experimental results show similar trends as the computational fluid dynamics (CFD) results presented in this report; however, some differences exist that will need to be assessed in future studies. The results of this testing will be used to improve the diode design to be tested in the liquid salt loop system

Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment

Matching is an important step for increasing interoperability between heterogeneous ontologies. Here, we present alignments we produced as domain experts, using a manual mapping process, between the Hymenoptera Anatomy Ontology and other existing arthropod anatomy ontologies (representing spiders, ticks, mosquitoes and Drosophila melanogaster). The resulting alignments contain from 43 to 368 mappings (correspondences), all derived from domain-expert input. Despite the many pairwise correspondences, only 11 correspondences were found in common between all ontologies, suggesting either major intrinsic differences between each ontology or gaps in representing each group’s anatomy. Furthermore, we compare our findings with putative correspondences from Bioportal (derived from LOOM software) and summarize the results in a total evidence alignment. We briefly discuss characteristics of the ontologies and issues with the matching process.Database URL: http://purl.obolibrary.org/obo/hao/2012-07-18/arthropod-mappings.ob

Tidal friction in close-in satellites and exoplanets. The Darwin theory re-visited

This report is a review of Darwin's classical theory of bodily tides in which we present the analytical expressions for the orbital and rotational evolution of the bodies and for the energy dissipation rates due to their tidal interaction. General formulas are given which do not depend on any assumption linking the tidal lags to the frequencies of the corresponding tidal waves (except that equal frequency harmonics are assumed to span equal lags). Emphasis is given to the cases of companions having reached one of the two possible final states: (1) the super-synchronous stationary rotation resulting from the vanishing of the average tidal torque; (2) the capture into a 1:1 spin-orbit resonance (true synchronization). In these cases, the energy dissipation is controlled by the tidal harmonic with period equal to the orbital period (instead of the semi-diurnal tide) and the singularity due to the vanishing of the geometric phase lag does not exist. It is also shown that the true synchronization with non-zero eccentricity is only possible if an extra torque exists opposite to the tidal torque. The theory is developed assuming that this additional torque is produced by an equatorial permanent asymmetry in the companion. The results are model-dependent and the theory is developed only to the second degree in eccentricity and inclination (obliquity). It can easily be extended to higher orders, but formal accuracy will not be a real improvement as long as the physics of the processes leading to tidal lags is not better known.Comment: 30 pages, 7 figures, corrected typo

Extrasolar planets and brown dwarfs around A-F type stars - VII. Theta Cygni radial velocity variations: planets or stellar phenomenon?

(abridged) In the frame of the search for extrasolar planets and brown dwarfs around early-type main-sequence stars, we present the results obtained on the early F-type star Theta Cygni. Elodie and Sophie at OHP were used to obtain the spectra. Our dedicated radial-velocity measurement method was used to monitor the star's radial velocities over five years. We also use complementary, high angular resolution and high-contrast images taken with PUEO at CFHT. We show that Theta Cygni radial velocities are quasi-periodically variable, with a ~150-day period. These variations are not due to the ~0.35-Msun stellar companion that we detected in imaging at more than 46 AU from the star. The absence of correlation between the bisector velocity span variations and the radial velocity variations for this 7 km/s vsini star, as well as other criteria indicate that the observed radial velocity variations are not due to stellar spots. The observed amplitude of the bisector velocity span variations also seems to rule out stellar pulsations. However, we observe a peak in the bisector velocity span periodogram at the same period as the one found in the radial velocity periodogram, which indicates a probable link between these radial velocity variations and the low amplitude lineshape variations which are of stellar origin. Long-period variations are not expected from this type of star to our knowledge. If a stellar origin (hence of new type) was to be confirmed for these long-period radial velocity variations, this would have several consequences on the search for planets around main-sequence stars, both in terms of observational strategy and data analysis. An alternative explanation for these variable radial velocities is the presence of at least one planet of a few Jupiter masses orbiting at less than 1 AU. (abridged)Comment: 9 pages, accepted in A

Optimizing for periodicity: a model-independent approach to flux crosstalk calibration for superconducting circuits

Flux tunability is an important engineering resource for superconducting circuits. Large-scale quantum computers based on flux-tunable superconducting circuits face the problem of flux crosstalk, which needs to be accurately calibrated to realize high-fidelity quantum operations. Typical calibration methods either assume that circuit elements can be effectively decoupled and simple models can be applied, or require a large amount of data. Such methods become ineffective as the system size increases and circuit interactions become stronger. Here we propose a new method for calibrating flux crosstalk, which is independent of the underlying circuit model. Using the fundamental property that superconducting circuits respond periodically to external fluxes, crosstalk calibration of N flux channels can be treated as N independent optimization problems, with the objective functions being the periodicity of a measured signal depending on the compensation parameters. We demonstrate this method on a small-scale quantum annealing circuit based on superconducting flux qubits, achieving comparable accuracy with previous methods. We also show that the objective function usually has a nearly convex landscape, allowing efficient optimization