Vortex Depinning in a Two-Dimensional Superfluid

\ua9 The Author(s) 2024.We employ the Gross–Pitaevskii theory to model a quantized vortex depinning from a small obstacle in a two-dimensional superfluid due to an imposed background superfluid flow. We find that, when the flow’s velocity exceeds a critical value, the vortex drifts orthogonally to the flow before subsequently moving parallel to it away from the pinning site. The motion of the vortex around the pinning site is also accompanied by an emission of a spiral-shaped sound pulse. Through simulations, we present a phase diagram of the critical flow velocity for vortex depinning together with an empirical formula that illustrates how the critical velocity increases with the height and width of the pinning site. By employing a variety of choices of initial and boundary conditions, we are able to obtain lower and upper bounds on the critical velocity and demonstrate the robustness of these results

Modelling Magnetar Behaviour with 3D Magnetothermal Simulations

The observational properties of isolated NSs are shaped by their magnetic field and surface temperature. They evolve in a strongly coupled fashion, and modelling them is key in understanding the emission properties of NSs. Much effort was put in tackling this problem in the past but only recently a suitable 3D numerical framework was developed. We present a set of 3D simulations addressing both the long-Term evolution (≈ 104-106 yrs) and short-lived outbursts (â 1 yr). Not only a 3D approach allows one to test complex field geometries, but it is absolutely key to model magnetar outbursts, which observations associate to the appearance of small, inherently asymmetric hot regions. Even though the mechanism that triggers these phenomena is not completely understood, following the evolution of a localised heat injection in the crust serves as a model to study the unfolding of the event

Three-dimensional Modeling of the Magnetothermal Evolution of Neutron Stars: Method and Test Cases

Neutron stars harbor extremely strong magnetic fields within their solid outer crust. The topology of this field strongly influences the surface temperature distribution and, hence, the star's observational properties. In this work, we present the first realistic simulations of the coupled crustal magnetothermal evolution of isolated neutron stars in three dimensions accounting for neutrino emission, obtained with the pseudo-spectral code parody. We investigate both the secular evolution, especially in connection with the onset of instabilities during the Hall phase, and the short-term evolution following episodes of localized energy injection. Simulations show that a resistive tearing instability develops in about a Hall time if the initial toroidal field exceeds $\approx {10}^{15}$ G. This leads to crustal failures because of the huge magnetic stresses coupled with the local temperature enhancement produced by dissipation. Localized heat deposition in the crust results in the appearance of hot spots on the star surface, which can exhibit a variety of patterns. Because the transport properties are strongly influenced by the magnetic field, the hot regions tend to drift away and get deformed following the magnetic field lines while cooling. The shapes obtained with our simulations are reminiscent of those recently derived from NICER X-ray observations of the millisecond pulsar PSR J0030+0451

3D Magnetothermal Simulations of Tangled Crustal Magnetic Field in Central Compact Objects

Central compact objects (CCOs) are young neutron stars emitting thermal X-rays with bolometric luminosities LX in the range of 1032–1034 erg s−1. Gourgouliatos, Hollerbach, and Igoshev recently suggested that peculiar emission properties of CCOs can be explained by tangled magnetic field configurations formed in a stochastic dynamo during the proto–neutron star stage. In this case the magnetic field consists of multiple small-scale components with negligible contribution of global dipolar field. We study numerically three-dimensional magnetothermal evolution of tangled crustal magnetic fields in neutron stars. We find that all configurations produce complicated surface thermal patterns that consist of multiple small hot regions located at significant separations from each other. The configurations with initial magnetic energy of (2.5–10) × 1047 erg have temperatures of hot regions that reach ≈ 0.2 keV, to be compared with the bulk temperature of ≈ 0.1 keV in our simulations with no cooling. A factor of two in temperature is also seen in observations of CCOs. The hot spots produce periodic modulations in light curve with typical amplitudes of ≤9%–11%. Therefore, the tangled magnetic field configuration can explain thermal emission properties of some CCOs

Determine TB-LAM point-of-care tuberculosis assay predicts poor outcomes in outpatients during their first year of antiretroviral therapy in South Africa.

BACKGROUND: Determine TB-LAM is the first point-of-care test (POC) for HIV-associated tuberculosis (TB) and rapidly identifies TB in those at high-risk for short-term mortality. While the relationship between urine-LAM and mortality has been previously described, the outcomes of those undergoing urine-LAM testing have largely been assessed during short follow-up periods within diagnostic accuracy studies. We therefore sought to assess the relationship between baseline urine-LAM results and subsequent hospitalization and mortality under real-world conditions among outpatients in the first year of ART. METHODS: Consecutive, HIV-positive adults with a CD4 count < 100 cells/uL presenting for ART initiation were enrolled. TB diagnoses and outcomes (hospitalization, loss-to-follow and mortality) were recorded during the first year following enrolment. Baseline urine samples were retrospectively tested using the urine-LAM POC assay. Kaplan Meier survival curves were used to assess the cumulative probability of hospitalization or mortality in the first year of follow-up, according to urine-LAM status. Cox regression analyses were performed to determine independent predictors of hospitalization and mortality at  three months and one year of follow-up. RESULTS: 468 patients with a median CD4 count of 59 cells/uL were enrolled. There were 140 patients (29.9%) with newly diagnosed TB in the first year of follow-up of which 79 (56.4%) were microbiologically-confirmed. A total of 18% (n = 84) required hospital admission and 12.2% (n = 57) died within a year of study entry. 38 out of 468 (8.1%) patients retrospectively tested urine-LAM positive - including 19.0% of those with microbiologically-proven TB diagnoses (n = 15/79) and 23.0% (n = 14/61) of those with clinical-only TB diagnoses; 9 of 38 (23.7%) of patients retrospectively testing LAM positive were never diagnosed with TB under routine program conditions. Among all patients (n = 468) in the first year of follow-up, a positive urine-LAM result was strongly associated with all-cause hospitalization and mortality with a corresponding adjusted hazard ratio (aHR) of 3.7 (95%CI, 1.9-7.1) and 2.6 (95%, 1.2-5.7), respectively. CONCLUSIONS: Systematic urine-LAM testing among ART-naïve HIV-positive outpatients with CD4 counts < 100 cells/uL detected TB cases that were missed under routine programme conditions and was highly predictive for subsequent hospitalization and mortality in the first year of ART

Good Vibrations : The evolution of whisking in small mammals

Special Issue: Extreme Anatomy: Living Beyond the Edge. January 2020Abstract While most mammals have whiskers, some tactile specialists - mainly small, nocturnal and arboreal species - can actively move their whiskers in a symmetrical, cyclic movement called whisking. Whisking enables mammals to rapidly, tactually scan their environment in order to efficiently guide locomotion and foraging in complex habitats. The muscle architecture that enables whisking is preserved from marsupials to primates, prompting researchers to suggest that a common ancestor might have had moveable whiskers. Studying the evolution of whisker touch sensing is difficult, and we suggest that measuring an aspect of skull morphology that correlates with whisking would enable comparisons between extinct and extant mammals. We find that whisking mammals have larger infraorbital foramen (IOF) areas, which indicates larger infraorbital nerves and an increase in sensory acuity. While this relationship is quite variable and IOF area cannot be used to solely predict the presence of whisking, whisking mammals all have large IOF areas. Generally, this pattern holds true regardless of an animal's substrate preferences or activity patterns. Data from fossil mammals and ancestral character state reconstruction and tracing techniques for extant mammals suggest that whisking is not the ancestral state for therian mammals. Instead, whisking appears to have evolved independently as many as seven times across the clades Marsupialia, Afrosoricida, Eulipotyphla and Rodentia, with Xenarthra the only placental superordinal clade lacking whisking species. However, the term whisking only captures symmetrical and rhythmic movements of the whiskers, rather than all possible whisker movements, and early mammals may still have had moveable whiskers. This article is protected by copyright. All rights reserved.Peer reviewe

Network analysis of host-virus communities in bats and rodents reveals determinants of cross-species transmission.

Bats are natural reservoirs of several important emerging viruses. Cross-species transmission appears to be quite common among bats, which may contribute to their unique reservoir potential. Therefore, understanding the importance of bats as reservoirs requires examining them in a community context rather than concentrating on individual species. Here, we use a network approach to identify ecological and biological correlates of cross-species virus transmission in bats and rodents, another important host group. We show that given our current knowledge the bat viral sharing network is more connected than the rodent network, suggesting viruses may pass more easily between bat species. We identify host traits associated with important reservoir species: gregarious bats are more likely to share more viruses and bats which migrate regionally are important for spreading viruses through the network. We identify multiple communities of viral sharing within bats and rodents and highlight potential species traits that can help guide studies of novel pathogen emergence.This work was supported by the Research and Policy for Infectious Disease Dynamics (RAPIDD) program of the Science and Technology Directorate (US Department of Homeland Security) and the Fogarty International Center (National Institutes of Health). D.T.S.H. acknowledges funding from a David H. Smith post-doctoral fellowship. A.A.C. is partially funded by a Royal Society Wolfson Research Merit award, and J.L.N.W. is supported by the Alborada Trust. Thanks to Paul Cryan and Michael O'Donnell of the USGS Fort Collins Science Center for help with species distribution analyses.This is the final version of the article. It first appeared from Wiley via http://dx.doi.org/10.1111/ele.1249

Support for viral persistence in bats from age-specific serology and models of maternal immunity.

Spatiotemporally-localised prediction of virus emergence from wildlife requires focused studies on the ecology and immunology of reservoir hosts in their native habitat. Reliable predictions from mathematical models remain difficult in most systems due to a dearth of appropriate empirical data. Our goal was to study the circulation and immune dynamics of zoonotic viruses in bat populations and investigate the effects of maternally-derived and acquired immunity on viral persistence. Using rare age-specific serological data from wild-caught Eidolon helvum fruit bats as a case study, we estimated viral transmission parameters for a stochastic infection model. We estimated mean durations of around 6 months for maternally-derived immunity to Lagos bat virus and African henipavirus, whereas acquired immunity was long-lasting (Lagos bat virus: mean 12 years, henipavirus: mean 4 years). In the presence of a seasonal birth pulse, the effect of maternally-derived immunity on virus persistence within modelled bat populations was highly dependent on transmission characteristics. To explain previous reports of viral persistence within small natural and captive E. helvum populations, we hypothesise that some bats must experience prolonged infectious periods or within-host latency. By further elucidating plausible mechanisms of virus persistence in bat populations, we contribute to guidance of future field studies

Skeletal muscle atrophy in heart failure with diabetes: from molecular mechanisms to clinical evidence

Two highly prevalent and growing global diseases impacted by skeletal muscle atrophy are chronic heart failure (HF) and type 2 diabetes mellitus (DM). The presence of either condition increases the likelihood of developing the other, with recent studies revealing a large and relatively poorly characterized clinical population of patients with coexistent HF and DM (HFDM). HFDM results in worse symptoms and poorer clinical outcomes compared with DM or HF alone, and cardiovascular‐focused disease‐modifying agents have proven less effective in HFDM indicating a key role of the periphery. This review combines current clinical knowledge and basic biological mechanisms to address the critical emergence of skeletal muscle atrophy in patients with HFDM as a key driver of symptoms. We discuss how the degree of skeletal muscle wasting in patients with HFDM is likely underpinned by a variety of mechanisms that include mitochondrial dysfunction, insulin resistance, inflammation, and lipotoxicity. Given many atrophic triggers (e.g. ubiquitin proteasome/autophagy/calpain activity and supressed IGF1‐Akt‐mTORC1 signalling) are linked to increased production of reactive oxygen species, we speculate that a higher pro‐oxidative state in HFDM could be a unifying mechanism that promotes accelerated fibre atrophy. Overall, our proposal is that patients with HFDM represent a unique clinical population, prompting a review of treatment strategies including further focus on elucidating potential mechanisms and therapeutic targets of muscle atrophy in these distinct patients

Bat trait, genetic and pathogen data from large-scale investigations of African fruit bats, Eidolon helvum.

Bats, including African straw-coloured fruit bats (Eidolon helvum), have been highlighted as reservoirs of many recently emerged zoonotic viruses. This common, widespread and ecologically important species was the focus of longitudinal and continent-wide studies of the epidemiological and ecology of Lagos bat virus, henipaviruses and Achimota viruses. Here we present a spatial, morphological, demographic, genetic and serological dataset encompassing 2827 bats from nine countries over an 8-year period. Genetic data comprises cytochrome b mitochondrial sequences (n=608) and microsatellite genotypes from 18 loci (n=544). Tooth-cementum analyses (n=316) allowed derivation of rare age-specific serologic data for a lyssavirus, a henipavirus and two rubulaviruses. This dataset contributes a substantial volume of data on the ecology of E. helvum and its viruses and will be valuable for a wide range of studies, including viral transmission dynamic modelling in age-structured populations, investigation of seasonal reproductive asynchrony in wide-ranging species, ecological niche modelling, inference of island colonisation history, exploration of relationships between island and body size, and various spatial analyses of demographic, morphometric or serological data.This is the final version of the article. It first appeared from Nature Publishing Group via http://dx.doi.org/10.1038/sdata.2016.4