Base metal budgets of a small catchment in a tropical montane forest in South Ecuador

In a tropical montane rain forest in south Ecuador, the alkali and earth alkali metals Ca, Mg, K, and Na are supplied by weathering of the parent substrate consisting of phyllites and metasandstones and by atmospheric inputs. Phases of acid deposition are interrupted by alkalinization through episodic basic dust deposition. Although the biological productivity of most terrestrial ecosystems is thought to be N- and/or P-limited, there is increasing evidence that the essential plant nutrients K, Na, Mg and Ca can also limit biological functioning. We quantified biological and geochemical contributions to base metal fluxes and set up a metal budget of a ca. 9.1-ha large catchment from 1998 to 2013. The catchment is characterized by a high annual interception loss (28–50 %) and a low contribution of stem flow to throughfall. Mean total annual soil input (throughfall + stemflow + litterfall) was 13800 ± 1500 mg m-2 (Ca, mean ± SD), 19000 ± 1510 (K), 4690 ± 619 (Mg) and 846 ± 592 (Na) of which 22 ± 6 % (Ca), 45 ± 16 (K), 39 ± 10 (Mg) and 84 ± 33 (Na) were leached to soil horizons below the organic layer. The three nutrient metals Ca, K and Mg were thus to a large part retained in the biotic part of the catchment. The canopy budget of K was consistently and most pronouncedly negative. The canopy budgets of Ca and Mg were closely correlated and in most years negative, while the budget of Na was consistently positive, indicating net retention of this element in the canopy. The mineral soil retained 79–94 % of Ca, K and Mg, while Na was net released from the mineral soil. The size of mainly biologically controlled aboveground fluxes of Ca, K and Mg was 1-2 orders of magnitude larger than that of mainly geochemically controlled fluxes which are driven by sorption to soil and weathering. Annual net hydrological fluxes (bulk deposition – stream flow) were –66 ± 278 mg m-2 (Ca), 361 ± 421 (K), –188 ± 159 (Mg) and –1700 ± 587 (Na). If estimated dry deposition was included, the system accumulated 86 kg Ca ha-1 and 199 kg K ha-1, had a nearly balanced budget of Mg (+0.3 kg ha-1) and lost 56 kg of Na ha-1 in the last 15 years. The strongest driver of all budgets was the input flux into the various compartments

Organizing research data

Research relies on ever larger amounts of data from experiments, automated production equipment, questionnaries, times series such as weather records, and so on. A major task in science is to combine, process and analyse such data to obtain evidence of patterns and correlations

Seminal plasma as a source of prostate cancer peptide biomarker candidates for detection of indolent and advanced disease

Background:Extensive prostate specific antigen screening for prostate cancer generates a high number of unnecessary biopsies and over-treatment due to insufficient differentiation between indolent and aggressive tumours. We hypothesized that seminal plasma is a robust source of novel prostate cancer (PCa) biomarkers with the potential to improve primary diagnosis of and to distinguish advanced from indolent disease. <br>Methodology/Principal Findings: In an open-label case/control study 125 patients (70 PCa, 21 benign prostate hyperplasia, 25 chronic prostatitis, 9 healthy controls) were enrolled in 3 centres. Biomarker panels a) for PCa diagnosis (comparison of PCa patients versus benign controls) and b) for advanced disease (comparison of patients with post surgery Gleason score <7 versus Gleason score >>7) were sought. Independent cohorts were used for proteomic biomarker discovery and testing the performance of the identified biomarker profiles. Seminal plasma was profiled using capillary electrophoresis mass spectrometry. Pre-analytical stability and analytical precision of the proteome analysis were determined. Support vector machine learning was used for classification. Stepwise application of two biomarker signatures with 21 and 5 biomarkers provided 83% sensitivity and 67% specificity for PCa detection in a test set of samples. A panel of 11 biomarkers for advanced disease discriminated between patients with Gleason score 7 and organ-confined (<pT3a) or advanced (≥pT3a) disease with 80% sensitivity and 82% specificity in a preliminary validation setting. Seminal profiles showed excellent pre-analytical stability. Eight biomarkers were identified as fragments of N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase​,prostatic acid phosphatase, stabilin-2, GTPase IMAP family member 6, semenogelin-1 and -2. Restricted sample size was the major limitation of the study.</br> <br>Conclusions/Significance: Seminal plasma represents a robust source of potential peptide makers for primary PCa diagnosis. Our findings warrant further prospective validation to confirm the diagnostic potential of identified seminal biomarker candidates.</br&gt

Cascade testing in Familial Hypercholesterolaemia: how should family members be contacted?

Cascade testing or screening provides an important mechanism for identifying people at risk of a genetic condition. For some autosomal dominant conditions, such as Familial Hpercholesterolaemia (FH), identifying relatives allows for significant health-affecting interventions to be administered, which can extend a person’s life expectancy significantly. However, cascade screening is not without ethical implications. In this paper, we examine one ethically contentious aspect of cascade screening programmes, namely the alternative methods by which relatives of a proband can be contacted. Should the proband be responsible for contacting his or her family members, or should the screening programme contact family members directly? We argue that direct contact is an ethically justifiable method of contact tracing in cascade screening for FH. Not only has this method of contact already been utilised without adverse effects, an examination of the ethical arguments against it shows these are unsubstantiated. We describe several criteria which, if met, will allow an appropriate balance to be struck between maximising the efficiency of family tracing and respecting the interests of probands and their relatives. Keywords Cascade genetic screening; cascade testing; confidentiality; autonomy; genetics; ethics; guidelines; familial hypercholesterolaemi

Multifragmentation of a very heavy nuclear system (I): Selection of single-source events

A sample of `single-source' events, compatible with the multifragmentation of very heavy fused systems, are isolated among well-measured 155Gd+natU 36AMeV reactions by examining the evolution of the kinematics of fragments with Z>=5 as a function of the dissipated energy and loss of memory of the entrance channel. Single-source events are found to be the result of very central collisions. Such central collisions may also lead to multiple fragment emission due to the decay of excited projectile- and target-like nuclei and so-called `neck' emission, and for this reason the isolation of single-source events is very difficult. Event-selection criteria based on centrality of collisions, or on the isotropy of the emitted fragments in each event, are found to be inefficient to separate the two mechanisms, unless they take into account the redistribution of fragments' kinetic energies into directions perpendicular to the beam axis. The selected events are good candidates to look for bulk effects in the multifragmentation process.Comment: 39 pages including 15 figures; submitted to Nucl. Phys.

Chronic non-specific low back pain - sub-groups or a single mechanism?

Copyright 2008 Wand and O'Connell; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Background: Low back pain is a substantial health problem and has subsequently attracted a considerable amount of research. Clinical trials evaluating the efficacy of a variety of interventions for chronic non-specific low back pain indicate limited effectiveness for most commonly applied interventions and approaches. Discussion: Many clinicians challenge the results of clinical trials as they feel that this lack of effectiveness is at odds with their clinical experience of managing patients with back pain. A common explanation for this discrepancy is the perceived heterogeneity of patients with chronic non-specific low back pain. It is felt that the effects of treatment may be diluted by the application of a single intervention to a complex, heterogeneous group with diverse treatment needs. This argument presupposes that current treatment is effective when applied to the correct patient. An alternative perspective is that the clinical trials are correct and current treatments have limited efficacy. Preoccupation with sub-grouping may stifle engagement with this view and it is important that the sub-grouping paradigm is closely examined. This paper argues that there are numerous problems with the sub-grouping approach and that it may not be an important reason for the disappointing results of clinical trials. We propose instead that current treatment may be ineffective because it has been misdirected. Recent evidence that demonstrates changes within the brain in chronic low back pain sufferers raises the possibility that persistent back pain may be a problem of cortical reorganisation and degeneration. This perspective offers interesting insights into the chronic low back pain experience and suggests alternative models of intervention. Summary: The disappointing results of clinical research are commonly explained by the failure of researchers to adequately attend to sub-grouping of the chronic non-specific low back pain population. Alternatively, current approaches may be ineffective and clinicians and researchers may need to radically rethink the nature of the problem and how it should best be managed