Heat Attenuation and Nutrient Delivery by Localized Upwelling Avoided Coral Bleaching Mortality in Northern Galapagos During 2015/2016 ENSO

Despite a very strong El Niño Southern Oscillation in 2015/2016, no coral mortality associated with bleaching was observed at the northern Galapagos (Ecuador) Islands of Darwin and Wolf. From March 2016 to March 2018, coral cover and health as well as water chemistry (NO3− and PO43−) and temperature were recorded. A marked heat anomaly reached 30 °C at Wolf in February 2016, but peak temperatures were attenuated after 2 d by a 4 °C drop. Temperature patterns at three depths (10, 15, and 20 m) and a subsequent and persistent phytoplankton bloom suggest topographically driven upwelling as the source of colder water and dissolved inorganic nutrients—both of which helped corals endure the heating episode. Consequently, no mortality and only partial bleaching were recorded in March 2016. Partially bleached corals contained numerous healthy zooxanthellae in deeper tissue layers. A continuous temperature record from 2012 to 2014 suggests that such upwelling events are common, inducing temperature fluctuations of up to 6 °C within 24 h during the observation period. Events at Wolf in 2016 suggest local upwelling reduced coral stress by relieving heat and by delivering nutrients required by corals to retain their regular temperature tolerance

Acute kidney injury and tools for risk-stratification in 456 patients with hantavirus-induced nephropathia epidemica

BACKGROUND Puumala virus (PUUV) is the most common species of hantavirus in Central Europe. Nephropathia epidemica (NE), caused by PUUV, is characterized by acute kidney injury (AKI) and thrombocytopenia. The major goals of this study were to provide a clear clinical phenotyping of AKI in patients with NE and to develop an easy prediction rule to identify patients, who are at lower risk to develop severe AKI. METHODS A cross-sectional prospective survey of 456 adult patients with serologically confirmed NE was performed. Data were collected from medical records and prospectively at follow-up visit. Severe AKI was defined by standard criteria according to the RIFLE (Risk, Injury, Failure, Loss, End-stage kidney disease) classification. Fuller statistical models were developed and validated to estimate the probability for severe AKI. RESULTS During acute NE, 88% of the patients had AKI according to the RILFE criteria during acute NE. A risk index score for severe AKI was derived by using three independent risk factors in patients with normal kidney function at time of diagnosis: thrombocytopenia [two points; odds ratios (OR): 3.77; 95% confidence intervals (CI): 1.82, 8.03], elevated C-reactive protein levels (one point; OR: 3.02; 95% CI: 1.42, 6.58) and proteinuria (one point; OR: 3.92; 95% CI: 1.33, 13.35). On the basis of a point score of one or two, the probability of severe AKI was 0.18 and 0.28 with an area under the curve of 0.71. CONCLUSION This clinical prediction rule provides a novel and diagnostically accurate strategy for the potential prevention and improved management of kidney complications in patients with NE and, ultimately, for a possible decrease in unnecessary hospitalization in a high number of patient

Ultrastructural biomarkers in symbiotic algae reflect the availability of dissolved inorganic nutrients and particulate food to the reef coral holobiont

Reef building corals associated with symbiotic algae (zooxanthellae) can access environmental nutrients from different sources, most significantly via the uptake of dissolved inorganic nutrients by the algal symbiont and heterotrophic feeding of the coral host. Climate change is expected to alter the nutrient environment in coral reefs with the potential to benefit or disturb coral reef resilience. At present, the relative importance of the two major nutrient sources is not well understood, making predictions of the responses of corals to changes in their nutrient environment difficult. Therefore, we have examined the long-term effects of the availability of different concentrations of dissolved inorganic nutrients and of nutrients in particulate organic form on the model coral Euphyllia paradivisa. Coral and algal biomass showed a significantly stronger increase in response to elevated levels of dissolved inorganic nutrients as compared to the supply with particulate food. Also, changes in the zooxanthellae ultrastructure, determined by transmission electron microscopy (TEM), were mostly driven by the availability of dissolved inorganic nutrients under the present experimental conditions. The larger size of symbiont cells, their increased accumulation of lipid bodies, a higher number of starch granules and the fragmentation of their accumulation body could be established as reliable biomarkers of low availability of dissolved inorganic nutrients to the coral holobiont

Multiple sequence alignment of psba(ncr) DNA sequences from Symbiodinium thermophilum and closely related Symbiodinium spp.

This file is a multiple sequence alignment of partial chloroplast psbA non coding region genes from Symbiodinium thermophilum and other closely related species of Symbiodinium. It is in a FASTA format. The first 22 Symbiodinium sequences were obtained from algae within Porites spp. corals from the Persian/Arabian gulf. The host identity, specific collection location and host species for each sample are detailed in the supplementary materials of the associated paper. The alignment was implemented using ClustalW but heavily modified manually. Reference sequences are included in the alignment. These are available in Genbank as detailed in the associated paper

Phosphate deficiency promotes coral bleaching and is reflected by the ultrastructure of symbiotic dinoflagellates

Enrichment of reef environments with dissolved inorganic nutrients is considered a major threat to the survival of corals living in symbiosis with dinoflagellates (Symbiodinium sp.). We argue, however, that the direct negative effects on the symbiosis are not necessarily caused by the nutrient enrichment itself but by the phosphorus starvation of the algal symbionts that can be caused by skewed nitrogen (N) to phosphorus (P) ratios. We exposed corals to imbalanced N:P ratios in long-term experiments and found that the undersupply of phosphate severely disturbed the symbiosis, indicated by the loss of coral biomass, malfunctioning of algal photosynthesis and bleaching of the corals. In contrast, the corals tolerated an undersupply with nitrogen at high phosphate concentrations without negative effects on symbiont photosynthesis, suggesting a better adaptation to nitrogen limitation. Transmission electron microscopy analysis revealed that the signatures of ultrastructural biomarkers represent versatile tools for the classification of nutrient stress in symbiotic algae. Notably, high N:P ratios in the water were clearly identified by the accumulation of uric acid crystals

The ATLAS Trigger Simulation with Legacy Software

Physics analyses at the LHC require accurate simulations of the detector response and the event selection processes, generally done with the most recent software releases. The trigger response simulation is crucial for determination of overall selection efficiencies and signal sensitivities and should be done with the same software release with which data were recorded. This requires potentially running with software dating many years back, the so-called legacy software. Therefore having a strategy for running legacy software in a modern environment becomes essential when data simulated for past years start to present a sizeable fraction of the total. The requirements and possibilities for such a simulation scheme within the ATLAS software framework were examined and a proof-of-concept simulation chain has been successfully implemented. One of the greatest challenges was the choice of a data format which promises long term compatibility with old and new software releases. Over the time periods envisaged, data format incompatibilities are also likely to emerge in databases and other external support services. Software availability may become an issue, when e.g. the support for the underlying operating system might stop. The encountered problems and developed solutions will be presented, and proposals for future development will be discussed. Some ideas reach beyond the retrospective trigger simulation scheme in ATLAS as they also touch more generally aspects of data preservation

Acclimatization of symbiotic corals to mesophotic light environments through wavelength transformation by fluorescent protein pigments

The depth distribution of reef-building corals exposes their photosynthetic symbionts of the genus Symbiodinium to extreme gradients in the intensity and spectral quality of the ambient light environment. Characterizing the mechanisms used by the coral holobiont to respond to the low intensity and reduced spectral composition of the light environment in deeper reefs (greater than 20 m) is fundamental to our understanding of the functioning and structure of reefs across depth gradients. Here, we demonstrate that host pigments, specifically photoconvertible red fluorescent proteins (pcRFPs), can promote coral adaptation/acclimatization to deeper-water light environments by transforming the prevalent blue light into orange-red light, which can penetrate deeper within zooxanthellae-containing tissues; this facilitates a more homogeneous distribution of photons across symbiont communities. The ecological importance of pcRFPs in deeper reefs is supported by the increasing proportion of red fluorescent corals with depth (measured down to 45 m) and increased survival of colour morphs with strong expression of pcRFPs in long-term light manipulation experiments. In addition to screening by host pigments from high light intensities in shallow water, the spectral transformation observed in deeper-water corals highlights the importance of GFP-like protein expression as an ecological mechanism to support the functioning of the coral–Symbiodinium association across steep environmental gradients