2,923 research outputs found
Estimating the Causal Effects of Marketing Interventions Using Propensity Score Methodology
Propensity score methods were proposed by Rosenbaum and Rubin [Biometrika 70
(1983) 41--55] as central tools to help assess the causal effects of
interventions. Since their introduction more than two decades ago, they have
found wide application in a variety of areas, including medical research,
economics, epidemiology and education, especially in those situations where
randomized experiments are either difficult to perform, or raise ethical
questions, or would require extensive delays before answers could be obtained.
In the past few years, the number of published applications using propensity
score methods to evaluate medical and epidemiological interventions has
increased dramatically. Nevertheless, thus far, we believe that there have been
few applications of propensity score methods to evaluate marketing
interventions (e.g., advertising, promotions), where the tradition is to use
generally inappropriate techniques, which focus on the prediction of an outcome
from background characteristics and an indicator for the intervention using
statistical tools such as least-squares regression, data mining, and so on.
With these techniques, an estimated parameter in the model is used to estimate
some global ``causal'' effect. This practice can generate grossly incorrect
answers that can be self-perpetuating: polishing the Ferraris rather than the
Jeeps ``causes'' them to continue to win more races than the Jeeps
visiting the high-prescribing doctors rather than the
low-prescribing doctors ``causes'' them to continue to write more
prescriptions. This presentation will take ``causality'' seriously, not just as
a casual concept implying some predictive association in a data set, and will
illustrate why propensity score methods are generally superior in practice to
the standard predictive approaches for estimating causal effects.Comment: Published at http://dx.doi.org/10.1214/088342306000000259 in the
Statistical Science (http://www.imstat.org/sts/) by the Institute of
Mathematical Statistics (http://www.imstat.org
Tropical Geometry of Statistical Models
This paper presents a unified mathematical framework for inference in
graphical models, building on the observation that graphical models are
algebraic varieties.
From this geometric viewpoint, observations generated from a model are
coordinates of a point in the variety, and the sum-product algorithm is an
efficient tool for evaluating specific coordinates. The question addressed here
is how the solutions to various inference problems depend on the model
parameters. The proposed answer is expressed in terms of tropical algebraic
geometry. A key role is played by the Newton polytope of a statistical model.
Our results are applied to the hidden Markov model and to the general Markov
model on a binary tree.Comment: 14 pages, 3 figures. Major revision. Applications now in companion
paper, "Parametric Inference for Biological Sequence Analysis
Development of the Trident 1 aerodynamic saike mechanism
The Aerospike drag reduction mechanism was designed and developed for use on the Trident I submarine launched ballistic missile. This mechanism encounters a unique combination of environments necessitating unique design solutions to ensure satisfactory operation over its design life. The development of the Aerospike is reviewed emphasizing the unique and interesting problems encountered and their solutions
Parametric Inference for Biological Sequence Analysis
One of the major successes in computational biology has been the unification,
using the graphical model formalism, of a multitude of algorithms for
annotating and comparing biological sequences. Graphical models that have been
applied towards these problems include hidden Markov models for annotation,
tree models for phylogenetics, and pair hidden Markov models for alignment. A
single algorithm, the sum-product algorithm, solves many of the inference
problems associated with different statistical models. This paper introduces
the \emph{polytope propagation algorithm} for computing the Newton polytope of
an observation from a graphical model. This algorithm is a geometric version of
the sum-product algorithm and is used to analyze the parametric behavior of
maximum a posteriori inference calculations for graphical models.Comment: 15 pages, 4 figures. See also companion paper "Tropical Geometry of
Statistical Models" (q-bio.QM/0311009
Testing of improved polyimide actuator rod seals at high temperature and under vacuum conditions for use in advanced aircraft hydraulic systems
Polyimide second-stage rod seals were evaluated to determine their suitability for applications in space station environments. The 6.35-cm (2.5-in.)K-section seal was verified for thermal cycling operation between room temperature and 478 K (400 F) and for operation in a 133 micron PA(0.000001 mm Hg) vacuum environment. The test seal completed the scheduled 96 thermal cycles and 1438 hr in vacuum with external rod seal leakage well within the maximum allowable of two drops per 25 actuation cycles. At program completion, the seals showed no signs of structural degradation. Posttest inspection showed the seals retained a snug fit against the shaft and housing walls, indicating additional wear life capability. Evaluation of a molecular flow section during vacuum testing, to inhibit fluid loss through vaporization, showed it to be beneficial with MIL-H-5606, a petroleum-base fluid, in comparison with MIL-H-83282, a synthetic hydrocarbon-base fluid
Model for Folding and Aggregation in RNA Secondary Structures
We study the statistical mechanics of RNA secondary structures designed to
have an attraction between two different types of structures as a model system
for heteropolymer aggregation. The competition between the branching entropy of
the secondary structure and the energy gained by pairing drives the RNA to
undergo a `temperature independent' second order phase transition from a molten
to an aggregated phase'. The aggregated phase thus obtained has a
macroscopically large number of contacts between different RNAs. The partition
function scaling exponent for this phase is \theta ~ 1/2 and the crossover
exponent of the phase transition is \nu ~ 5/3. The relevance of these
calculations to the aggregation of biological molecules is discussed.Comment: Revtex, 4 pages; 3 Figures; Final published versio
Self-harm with suicidal and non-suicidal intent in young people in sub-Saharan Africa: a systematic review
Background: Self-harm, whether attributed to suicidal or non-suicidal motives, is associated with several poor outcomes in young people, including eventual suicide. Much of our understanding of self-harm in young people is based on literature from Europe (particularly, the UK), North America, and Australia. We aimed to synthesise the available evidence on prevalence, the commonly reported self-harm methods, correlates, risk and protective factors, and reasons for self-harm, in adolescents (aged 10–25 years) in sub-Saharan Africa.
Method: We searched MEDLINE, PsycINFO, PubMed, African Journals OnLine, and African Index Medicus for records from 1950 through August 2019, without language restrictions. We supplemented the database searches by searching relevant portals for postgraduate theses, reference harvesting, contacting authors for unpublished studies, and hand searching relevant print sources. We applied narrative synthesis to the evidence.
Results: Seventy-four studies from 18 sub-Saharan African countries met the inclusion criteria. The median lifetime prevalence estimate was 10·3% (interquartile range [IQR] 4·6% – 16·1%); median 12-month prevalence estimate was 16·9% (IQR: 11·5% – 25·5%); median 6-month prevalence estimate was 18·2% (IQR: 12·7% – 21·8%); and the median 1-month prevalence estimate was 3·2% (IQR: 2·5–14·8%). Studies from Western sub-Saharan Africa reported the highest 12-month prevalence estimates (median = 24·3%; IQR = 16·9% – 27·9%). Clinical samples commonly reported overdose, whereas self-cutting was most commonly reported in non-clinical samples. Academic failure, sexual, emotional, and physical abuse, romantic relationship problems, family conflict, depression, and previous self-harm were identified as key correlates of self-harm. No study reported protective factors against self-harm.
Conclusion: Variation in estimates was explained by small sample sizes and variation in definitions and measures used. Exploration of associations, risks and protective factors was based upon concepts and measures derived from high income countries. More detailed and culturally sensitive research is needed to understand the context-specific risks and protective factors for self-harm in adolescents in sub-Saharan Africa
Exact solution of the Bernoulli matching model of sequence alignment
Through a series of exact mappings we reinterpret the Bernoulli model of
sequence alignment in terms of the discrete-time totally asymmetric exclusion
process with backward sequential update and step function initial condition.
Using earlier results from the Bethe ansatz we obtain analytically the exact
distribution of the length of the longest common subsequence of two sequences
of finite lengths . Asymptotic analysis adapted from random matrix theory
allows us to derive the thermodynamic limit directly from the finite-size
result.Comment: 13 pages, 4 figure
Adhesive F-actin Waves: A Novel Integrin-Mediated Adhesion Complex Coupled to Ventral Actin Polymerization
At the leading lamellipodium of migrating cells, protrusion of an Arp2/3-nucleated actin network is coupled to formation of integrin-based adhesions, suggesting that Arp2/3-mediated actin polymerization and integrin-dependent adhesion may be mechanistically linked. Arp2/3 also mediates actin polymerization in structures distinct from the lamellipodium, in “ventral F-actin waves” that propagate as spots and wavefronts along the ventral plasma membrane. Here we show that integrins engage the extracellular matrix downstream of ventral F-actin waves in several mammalian cell lines as well as in primary mouse embryonic fibroblasts. These “adhesive F-actin waves” require a cycle of integrin engagement and disengagement to the extracellular matrix for their formation and propagation, and exhibit morphometry and a hierarchical assembly and disassembly mechanism distinct from other integrin-containing structures. After Arp2/3-mediated actin polymerization, zyxin and VASP are co-recruited to adhesive F-actin waves, followed by paxillin and vinculin, and finally talin and integrin. Adhesive F-actin waves thus represent a previously uncharacterized integrin-based adhesion complex associated with Arp2/3-mediated actin polymerization
Similarity-Detection and Localization
The detection of similarities between long DNA and protein sequences is
studied using concepts of statistical physics. It is shown that mutual
similarities can be detected by sequence alignment methods only if their amount
exceeds a threshold value. The onset of detection is a continuous phase
transition which can be viewed as a localization-delocalization transition. The
``fidelity'' of the alignment is the order parameter of that transition; it
leads to criteria for the selection of optimal alignment parameters.Comment: 4 pages including 4 figures (308kb post-script file
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