Studies on exploiting semiochemicals for pest management in organic farming systems OF0188

This study addresses the extent to which pest management systems can exploit semiochemicals (defined below) in ways acceptable to organic farming, and determines where the science base needs to be expanded to accommodate specific problems arising in an increasing organic farming sector. It considers whether current knowledge of semiochemical release from particular crop plants, herbs and wild plant species could be investigated further in relation to organic farming practice and identifies how strategies of multiple cropping, that exploit known semiochemical interactions, could be applied to key pest problems in organic production. Where such exploitation is not feasible, other strategies using semiochemicals including traps, extracts of natural products and nature-identical synthetic products are considered. Finally, general and specific directions in which research and development could facilitate greater penetration of the use of semiochemicals in crop protection for organic farming are identified. Semiochemicals are natural products that, by acting as signals, regulate interactions between organisms e.g. plants and insects. Once the semiochemical interactions between a pest and its host plant have been elucidated they can be exploited to regulate the pest population, providing an alternative control strategy to conventional toxicants. The choice of approach by which the semiochemicals are deployed relates to three options, i.e. from a natural plant source, from an extract or as a nature identical synthetic product. However, even where the most natural situations of mixed cropping are used, the scientific basis of the interaction must be established for robustness and sustainability of the approach. A complete understanding of the process allows a risk assessment to be made of any problems that might ensue when exploiting natural systems in different configurations from those encountered naturally. A major approach to using semiochemical based pest control is to exploit ways of repelling pests from crop plants and attracting them towards trap plantations. Deploying semiochemicals generated naturally by plants is consistent with organic farming practice, where a range of mixed cropping techniques are employed already, which ‘unconsciously’ utilise semiochemical effects. Thus, the acceptance and use of systems exploiting aspects of semiochemical deployment demonstrate an emerging role in organic farming practices. However, as emphasised before, a comprehensive knowledge of the semiochemical interactions that underpin these techniques is vital if they are to be exploited fully. Other pest control approaches compatible with organic farming, such as encouragement of beneficial species and the use of reflective surfaces in mulches, may not involve semiochemical effects, but could be exploited more beneficially by integration with semiochemical practices. Semiochemicals generated naturally by plants can be used to influence beneficial organisms as well as invertebrate pests. For example, plant defence chemicals, induced by pest or pathogen infestation, can affect the behaviour of pests and their natural enemies. Semiochemicals can be employed to maximise the impact of parasitic organisms that attack pest populations, for example in the management of refugia for maintaining and increasing populations of these beneficial organisms. In addition, the approach can be applied against other organisms antagonistic to agriculture besides invertebrate pests, for example in weed control, where signals interfering with weed germination can be exploited. Extracts of natural products provide semiochemicals in a form that is familiar and acceptable to organic farming practice, where plant extracts are already used as toxicants or as semiochemical antifeedants and repellents. However, often the scientific basis for use of these materials is limited, and therefore, exploitation is also limited and can be unreliable. By understanding the composition and the mechanism of activity of semiochemicals, natural product extracts can be improved by selection of the best sources of natural materials and appropriate processes of extraction and formulation. Many natural products, particularly pheromones (semiochemicals acting between members of the same species), can be synthesised as nature-identical and the synthetic forms are often indistinguishable from the natural form. Synthesis can be expensive, but where possible, starting materials should be obtained from natural renewable resources. Nature-identical synthetic pheromones are used widely in parts of the world, either deployed in traps for monitoring, mass trapping and lure and kill strategies or for direct pest control approaches such as mating disruption. In addition, manipulation of beneficial species with pheromones is being investigated and synthetic food-related attractants and oviposition attractants have also been developed for pests where pheromones are not available. Already some nature-identical synthetic semiochemicals have been accepted as compatible with organic farming practice. The registration of many sex and aggregation pheromones has been possible because they are nature-identical and are deployed away from the crop or on crop areas that are not consumed. In most cases, semiochemicals, deployed alone, are not sufficiently robust to control pest populations directly. They are most effective when incorporated into strategies, such as the ‘push-pull’ strategy, that are integrated with other forms of pest control, e.g. pathogens, parasitoids and predators, mechanical barriers and resistant plant varieties. The integration of semiochemical approaches with other methods of pest population reduction will help prevent the development of pest resistance to the overall strategy. Since the integrated strategy comprises a number of components that affect different aspects of pest behaviour and development each component can be relatively ineffective when compared to conventional pesticides. However, this has the advantage of not selecting efficiently for resistance to any component of the strategy and thus contributes to the sustainability of the approach. Recommendations 1) Develop a priority list of specific and general problems in organic production to be targeted by semiochemical methodologies in addition to known problems such as in carrot and lettuce production, aphids on a range of vegetable crops and for fruit pests. 2) Develop semiochemical based control methods suitable for 1) and for the targets already known. 3) Provide scientific input, where lacking, for 1 and 2. 4) Encourage greater diversification in organic cropping systems, including agroforestry, so as to exploit current knowledge of semiochemical based control and to pave the way for new interventions as the science develops. 5) Consider semiochemical attributes of non-crop plant inputs including mulches, weeds and multifunctional beneficial plants and the roles that they might play in organic systems. 6) Initiate organic plant breeding programmes, specifically to exploit natural semiochemical release where understood, for crop and companion plants

Pest-predator spatial relationships in winter rape: implications for integrated crop management

Douglas Warner, Les J Allen-Williams, Andrew W Ferguson, and Ingrid H Williams, 'Pest–predator spatial relationships in winter rape: implications for integrated crop management', Pest Management Science, Vol. 56 (11): 977-982, November 2000, doi: 10.1002/1526-4998(200011)56:113.0.CO;2-U. Copyright © 2000 Society of Chemical IndustryThe brassica pod midge (Dasineura brassicae) is an important and widespread pest of winter and spring oilseed rape throughout Europe. Pods infested by D brassicae larvae split prematurely, releasing seeds, and the larvae drop to the soil into which they burrow to pupate. At this stage in its lifecycle D brassicae is potentially vulnerable to predation by carabid beetles foraging on the soil surface. This is the first study in the UK to focus on carabid beetles as predators of D brassicae in the oilseed rape crop. The spatio-temporal distributions of larvae of D brassicae dropping to the soil from the crop canopy and of adult carabid beetles active on the soil surface were analysed in two consecutive years. Insect samples were collected from spatially referenced sampling points across each crop. Counts of insects were mapped and analysed, and the degree of spatial association between predator and prey determined using Spatial Analysis by Distance Indices (SADIE). Carabid species abundant and active during peak drop of first generation D brassicae larvae included Agonum dorsale, Amara similata, Harpalus rufipes and Nebria brevicollis. The larvae of D brassicae had a marked edge distribution within the crop. SADIE analysis revealed significant spatial association between larvae of D brassicae and adult H rufipes (P <0.05) in 1998, but not with adults of A dorsale, A similata or N brevicollis. In 1999, there was strong spatial association only between larvae of D brassicae and adult A dorsale (P <0.01). Aggregation of N brevicollis adults occurred in some areas of greatest D brassicae larval counts in 1999, but overall spatial association was not signi®cant. The distributions are discussed in terms of their relevance to integrated crop management (ICM) strategies and spatial targeting of insecticides.Peer reviewe

Universal architecture of bacterial chemoreceptor arrays

Chemoreceptors are key components of the high-performance signal transduction system that controls bacterial chemotaxis. Chemoreceptors are typically localized in a cluster at the cell pole, where interactions among the receptors in the cluster are thought to contribute to the high sensitivity, wide dynamic range, and precise adaptation of the signaling system. Previous structural and genomic studies have produced conflicting models, however, for the arrangement of the chemoreceptors in the clusters. Using whole-cell electron cryo-tomography, here we show that chemoreceptors of different classes and in many different species representing several major bacterial phyla are all arranged into a highly conserved, 12-nm hexagonal array consistent with the proposed “trimer of dimers” organization. The various observed lengths of the receptors confirm current models for the methylation, flexible bundle, signaling, and linker sub-domains in vivo. Our results suggest that the basic mechanism and function of receptor clustering is universal among bacterial species and was thus conserved during evolution

Experimental Space Shuttle Orbiter Studies to Acquire Data for Code and Flight Heating Model Validation

In an experimental study to obtain detailed heating data over the Space Shuttle Orbiter, CUBRC has completed an extensive matrix of experiments using three distinct models and two unique hypervelocity wind tunnel facilities. This detailed data will be employed to assess heating augmentation due to boundary layer transition on the Orbiter wing leading edge and wind side acreage with comparisons to computational methods and flight data obtained during the Orbiter Entry Boundary Layer Flight Experiment and HYTHIRM during STS-119 reentry. These comparisons will facilitate critical updates to be made to the engineering tools employed to make assessments about natural and tripped boundary layer transition during Orbiter reentry. To achieve the goals of this study data was obtained over a range of Mach numbers from 10 to 18, with flight scaled Reynolds numbers and model attitudes representing key points on the Orbiter reentry trajectory. The first of these studies were performed as an integral part of Return to Flight activities following the accident that occurred during the reentry of the Space Shuttle Columbia (STS-107) in February of 2003. This accident was caused by debris, which originated from the foam covering the external tank bipod fitting ramps, striking and damaging critical wing leading edge heating tiles that reside in the Orbiter bow shock/wing interaction region. During investigation of the accident aeroheating team members discovered that only a limited amount of experimental wing leading edge data existed in this critical peak heating area and a need arose to acquire a detailed dataset of heating in this region. This new dataset was acquired in three phases consisting of a risk mitigation phase employing a 1.8% scale Orbiter model with special temperature sensitive paint covering the wing leading edge, a 0.9% scale Orbiter model with high resolution thin-film instrumentation in the span direction, and the primary 1.8% scale Orbiter model with detailed thin-film resolution in both the span and chord direction in the area of peak heating. Additional objectives of this first study included: obtaining natural or tripped turbulent wing leading edge heating levels, assessing the effectiveness of protuberances and cavities placed at specified locations on the orbiter over a range of Mach numbers and Reynolds numbers to evaluate and compare to existing engineering and computational tools, obtaining cavity floor heating to aid in the verification of cavity heating correlations, acquiring control surface deflection heating data on both the main body flap and elevons, and obtain high speed schlieren videos of the interaction of the orbiter nose bow shock with the wing leading edge. To support these objectives, the stainless steel 1.8% scale orbiter model in addition to the sensors on the wing leading edge was instrumented down the windward centerline, over the wing acreage on the port side, and painted with temperature sensitive paint on the starboard side wing acreage. In all, the stainless steel 1.8% scale Orbiter model was instrumented with over three-hundred highly sensitive thin-film heating sensors, two-hundred of which were located in the wing leading edge shock interaction region. Further experimental studies will also be performed following the successful acquisition of flight data during the Orbiter Entry Boundary Layer Flight Experiment and HYTHIRM on STS-119 at specific data points simulating flight conditions and geometries. Additional instrumentation and a protuberance matching the layout present during the STS-119 boundary layer transition flight experiment were added with testing performed at Mach number and Reynolds number conditions simulating conditions experienced in flight. In addition to the experimental studies, CUBRC also performed a large amount of CFD analysis to confirm and validate not only the tunnel freestream conditions, but also 3D flows over the orbiter acreage, wing leading edge, and controlurfaces to assess data quality, shock interaction locations, and control surface separation regions. This analysis is a standard part of any experimental program at CUBRC, and this information was of key importance for post-test data quality analysis and understanding particular phenomena seen in the data. All work during this effort was sponsored and paid for by the NASA Space Shuttle Program Office at the Johnson Space Center in Houston, Texas

Feedback control architecture and the bacterial chemotaxis network.

PMCID: PMC3088647This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Bacteria move towards favourable and away from toxic environments by changing their swimming pattern. This response is regulated by the chemotaxis signalling pathway, which has an important feature: it uses feedback to 'reset' (adapt) the bacterial sensing ability, which allows the bacteria to sense a range of background environmental changes. The role of this feedback has been studied extensively in the simple chemotaxis pathway of Escherichia coli. However it has been recently found that the majority of bacteria have multiple chemotaxis homologues of the E. coli proteins, resulting in more complex pathways. In this paper we investigate the configuration and role of feedback in Rhodobacter sphaeroides, a bacterium containing multiple homologues of the chemotaxis proteins found in E. coli. Multiple proteins could produce different possible feedback configurations, each having different chemotactic performance qualities and levels of robustness to variations and uncertainties in biological parameters and to intracellular noise. We develop four models corresponding to different feedback configurations. Using a series of carefully designed experiments we discriminate between these models and invalidate three of them. When these models are examined in terms of robustness to noise and parametric uncertainties, we find that the non-invalidated model is superior to the others. Moreover, it has a 'cascade control' feedback architecture which is used extensively in engineering to improve system performance, including robustness. Given that the majority of bacteria are known to have multiple chemotaxis pathways, in this paper we show that some feedback architectures allow them to have better performance than others. In particular, cascade control may be an important feature in achieving robust functionality in more complex signalling pathways and in improving their performance

A three-dimensional model of wave attenuation in the marginal ice zone

Extent: 17p.A three-dimensional model of wave scattering by a large array of floating thin elastic plates is used to predict the rate of ocean wave attenuation in the marginal ice zone in terms of the properties of the ice cover and the incoming wavefield. This is regarded as a small step toward assimilating interactions of ocean waves with areas of sea ice into oceanic general circulation models. Numerical results confirm previous findings that attenuation is predominantly affected by wave period and by the average thickness of the ice cover. It is found that the shape and distribution of the floes and the inclusion of an Archimedean draft has little impact on the attenuation produced. The model demonstrates a linear relationship between ice cover concentration and attenuation. An additional study is conducted into the directional evolvement of the wavefield, where collimation and spreading can both occur, depending on the physical circumstances. Finally, the attenuation predicted by the new three-dimensional model is compared with an existing two-dimensional model and with two sets of experimental data, with the latter producing convincing agreement.L. G. Bennetts, M. A. Peter, V. A. Squire, and M. H. Meyla

Predicting Inter-Species Cross-Talk in Two-Component Signalling Systems

Phosphosignalling pathways are an attractive option for the synthetic biologist looking for a wide repertoire of modular components from which to build. We demonstrate that two-component systems can be used in synthetic biology. However, their potential is limited by the fact that host cells contain many of their own phosphosignalling pathways and these may interact with, and cross-talk to, the introduced synthetic components. In this paper we also demonstrate a simple bioinformatic tool that can help predict whether interspecies cross-talk between introduced and native two-component signalling pathways will occur and show both in vitro and in vivo that the predicted interactions do take place. The ability to predict potential cross-talk prior to designing and constructing novel pathways or choosing a host organism is essential for the promise that phosphosignalling components hold for synthetic biology to be realised

NO PLIF Visualizations of the Orion Capsule in LENS-I

Planar laser-induced fluorescence (PLIF) of nitric oxide (NO) was used to visualize the interaction of reaction-control-system (RCS) jet flows in the wake of a hypersonic capsule reentry vehicle. The tests were performed at the Calspan University at Buffalo Research Center's (CUBRC) LENS-I reflected shock tunnel facility. This was the first application of PLIF to study RCS jets in a large-scale pulsed hypersonic facility. The LENS-I facility allowed RCS jet flows to be studied while varying the flow enthalpy, Reynolds number, angle of attack and jet configuration. The interaction of pitch and roll jets with the flowfield was investigated. Additionally, thin film sensors were used to monitor heat transfer on the surface of the model to detect any localized heating resulting from the firing of the RCS jets. Tests were conducted with the model held at angles of attack of 18deg and 22deg. The nominal Mach number in all tests was 8, while Reynolds number based on model diameter ranged from 2.2x10(exp 6) - 1.5x10(exp 7). Images were processed using the Virtual Diagnostics Interface (ViDI) system developed at NASA Langley Research Center to provide a three-dimensional display of the experimental data