From feces to data: A metabarcoding method for analyzing consumed and available prey in a bird‐insect food web

Diets play a key role in understanding trophic interactions. Knowing the actual structure of food webs contributes greatly to our understanding of biodiversity and ecosystem functioning. The research of prey preferences of different predators requires knowledge not only of the prey consumed, but also of what is available. In this study, we applied DNA metabarcoding to analyze the diet of 4 bird species (willow tits Poecile montanus, Siberian tits Poecile cinctus, great tits Parus major and blue tits Cyanistes caeruleus) by using the feces of nestlings. The availability of their assumed prey (Lepidoptera) was determined from feces of larvae (frass) collected from the main foraging habitat, birch (Betula spp.) canopy. We identified 53 prey species from the nestling feces, of which 11 (21%) were also detected from the frass samples (eight lepidopterans). Approximately 80% of identified prey species in the nestling feces represented lepidopterans, which is in line with the earlier studies on the parids' diet. A subsequent laboratory experiment showed a threshold for fecal sample size and the barcoding success, suggesting that the smallest frass samples do not contain enough larval DNA to be detected by high‐throughput sequencing. To summarize, we apply metabarcoding for the first time in a combined approach to identify available prey (through frass) and consumed prey (via nestling feces), expanding the scope and precision for future dietary studies on insectivorous birds.</p

Bird populations most exposed to climate change are less sensitive to climatic variation

The phenology of many species shows strong sensitivity to climate change; however, with few large scale intra-specific studies it is unclear how such sensitivity varies over a species' range. We document large intra-specific variation in phenological sensitivity to temperature using laying date information from 67 populations of two co-familial European songbirds, the great tit (Parus major) and blue tit (Cyanistes caeruleus), covering a large part of their breeding range. Populations inhabiting deciduous habitats showed stronger phenological sensitivity than those in evergreen and mixed habitats. However, populations with higher sensitivity tended to have experienced less rapid change in climate over the past decades, such that populations with high phenological sensitivity will not necessarily exhibit the strongest phenological advancement. Our results show that to effectively assess the impact of climate change on phenology across a species' range it will be necessary to account for intra-specific variation in phenological sensitivity, climate change exposure, and the ecological characteristics of a population. Intra-specific variations may contribute to heterogeneous responses to climate change across a species' range. Here, the authors investigate the phenology of two bird species across their breeding ranges, and find that their sensitivity to temperature is uncoupled from exposure to climate change.Peer reviewe

Temperature synchronizes temporal variation in laying dates across European hole-nesting passerines

Publisher Copyright: © 2022 The Authors. Ecology published by Wiley Periodicals LLC on behalf of The Ecological Society of America.Identifying the environmental drivers of variation in fitness-related traits is a central objective in ecology and evolutionary biology. Temporal fluctuations of these environmental drivers are often synchronized at large spatial scales. Yet, whether synchronous environmental conditions can generate spatial synchrony in fitness-related trait values (i.e., correlated temporal trait fluctuations across populations) is poorly understood. Using data from long-term monitored populations of blue tits (Cyanistes caeruleus, n = 31), great tits (Parus major, n = 35), and pied flycatchers (Ficedula hypoleuca, n = 20) across Europe, we assessed the influence of two local climatic variables (mean temperature and mean precipitation in February–May) on spatial synchrony in three fitness-related traits: laying date, clutch size, and fledgling number. We found a high degree of spatial synchrony in laying date but a lower degree in clutch size and fledgling number for each species. Temperature strongly influenced spatial synchrony in laying date for resident blue tits and great tits but not for migratory pied flycatchers. This is a relevant finding in the context of environmental impacts on populations because spatial synchrony in fitness-related trait values among populations may influence fluctuations in vital rates or population abundances. If environmentally induced spatial synchrony in fitness-related traits increases the spatial synchrony in vital rates or population abundances, this will ultimately increase the risk of extinction for populations and species. Assessing how environmental conditions influence spatiotemporal variation in trait values improves our mechanistic understanding of environmental impacts on populations.Peer reviewe

Connecting the data landscape of long-term ecological studies: The SPI-Birds data hub

The integration and synthesis of the data in different areas of science is drastically slowed and hindered by a lack of standards and networking programmes. Long-term studies of individually marked animals are not an exception. These studies are especially important as instrumental for understanding evolutionary and ecological processes in the wild. Furthermore, their number and global distribution provides a unique opportunity to assess the generality of patterns and to address broad-scale global issues (e.g. climate change). To solve data integration issues and enable a new scale of ecological and evolutionary research based on long-term studies of birds, we have created the SPI-Birds Network and Database (www.spibirds.org)\u2014a large-scale initiative that connects data from, and researchers working on, studies of wild populations of individually recognizable (usually ringed) birds. Within year and a half since the establishment, SPI-Birds has recruited over 120 members, and currently hosts data on almost 1.5 million individual birds collected in 80 populations over 2,000 cumulative years, and counting. SPI-Birds acts as a data hub and a catalogue of studied populations. It prevents data loss, secures easy data finding, use and integration and thus facilitates collaboration and synthesis. We provide community-derived data and meta-data standards and improve data integrity guided by the principles of Findable, Accessible, Interoperable and Reusable (FAIR), and aligned with the existing metadata languages (e.g. ecological meta-data language). The encouraging community involvement stems from SPI-Bird's decentralized approach: research groups retain full control over data use and their way of data management, while SPI-Birds creates tailored pipelines to convert each unique data format into a standard format. We outline the lessons learned, so that other communities (e.g. those working on other taxa) can adapt our successful model. Creating community-specific hubs (such as ours, COMADRE for animal demography, etc.) will aid much-needed large-scale ecological data integration

Bird populations most exposed to climate change are less sensitive to climatic variation

The phenology of many species shows strong sensitivity to climate change; however, with few large scale intra-specific studies it is unclear how such sensitivity varies over a species' range. We document large intra-specific variation in phenological sensitivity to temperature using laying date information from 67 populations of two co-familial European songbirds, the great tit (Parus major) and blue tit (Cyanistes caeruleus), covering a large part of their breeding range. Populations inhabiting deciduous habitats showed stronger phenological sensitivity than those in evergreen and mixed habitats. However, populations with higher sensitivity tended to have experienced less rapid change in climate over the past decades, such that populations with high phenological sensitivity will not necessarily exhibit the strongest phenological advancement. Our results show that to effectively assess the impact of climate change on phenology across a species' range it will be necessary to account for intra-specific variation in phenological sensitivity, climate change exposure, and the ecological characteristics of a population.Intra-specific variations may contribute to heterogeneous responses to climate change across a species' range. Here, the authors investigate the phenology of two bird species across their breeding ranges, and find that their sensitivity to temperature is uncoupled from exposure to climate change

Temperature synchronizes temporal variation in laying dates across European hole-nesting passerines

Identifying the environmental drivers of variation in fitness-related traits is a central objective in ecology and evolutionary biology. Temporal fluctuations of these environmental drivers are often synchronized at large spatial scales. Yet, whether synchronous environmental conditions can generate spatial synchrony in fitness-related trait values (i.e., correlated temporal trait fluctuations across populations) is poorly understood. Using data from long-term monitored populations of blue tits (Cyanistes caeruleus, n = 31), great tits (Parus major, n = 35), and pied flycatchers (Ficedula hypoleuca, n = 20) across Europe, we assessed the influence of two local climatic variables (mean temperature and mean precipitation in February-May) on spatial synchrony in three fitness-related traits: laying date, clutch size, and fledgling number. We found a high degree of spatial synchrony in laying date but a lower degree in clutch size and fledgling number for each species. Temperature strongly influenced spatial synchrony in laying date for resident blue tits and great tits but not for migratory pied flycatchers. This is a relevant finding in the context of environmental impacts on populations because spatial synchrony in fitness-related trait values among populations may influence fluctuations in vital rates or population abundances. If environmentally induced spatial synchrony in fitness-related traits increases the spatial synchrony in vital rates or population abundances, this will ultimately increase the risk of extinction for populations and species. Assessing how environmental conditions influence spatiotemporal variation in trait values improves our mechanistic understanding of environmental impacts on populations

Boreal populations facing climatic and habitat changes

Abstract Anthropogenic climate change and habitat loss and deterioration affect populations worldwide. Climate warming has changed phenologies of many species across trophic levels. Some predator populations now experience temporal mismatches with their prey, as timings of peak prey abundance and of the predator’s highest food demands no longer meet. The temporal mismatch hypothesis suggests that the population’s recruitment rate is related to its degree of synchrony with the food resources needed to feed offspring. However, species’ and populations’ responses to climate warming differ. Human land use alters and destroys habitats of countless species. For example, many boreal forest bird populations have declined, presumably due to intensive forestry. It has decreased the amount of dead wood, causing a threat to saproxylic species. Identification of the key characteristics of high-quality habitats is essential for conservation planning and for developing sustainable forestry. As individuals are suspected to settle in habitats that maximize their fitness, analysis of nest site selection can be used to identify the key habitats. My dissertation concerns the impacts of climate change and habitat deterioration on boreal populations. I use hole-nesting passerines as model species. By utilizing long-term data I show that breeding phenologies of Parus major and Poecile montanus, but not of Cyanistes caeruleus, have shifted earlier. Also, the timing of the food peak has advanced, improving the synchrony between P. montanus and caterpillars. In P. major and C. caeruleus, synchrony has remained good. However, the positive effect of good synchrony on breeding success seems to be conditional, arising only in certain circumstances, such as in years of high caterpillar abundance. I suggest that in boreal populations temperature affects timing of breeding mostly as a proximate factor. The availability of standing decaying trees used for nesting sites was the most important habitat characteristic determining the nest site selection of P. montanus. Remote sensing data alone was insufficient to produce reliable models, as the ecologically important small-scale factor can only be determined by direct field surveys. Omission of forest thinning in selected forest sites would ensure the continuous availability of decaying wood with positive influence on biodiversity in managed forests.Tiivistelmä Ihmisen aiheuttama habitaattien katoaminen ja huononeminen sekä ilmastonmuutos vaikuttavat populaatioihin kaikkialla maailmassa. Ilmaston lämpeneminen on muuttanut monien lajien fenologioita eri trofiatasoilla. Osalla saalistajalajien populaatioista suurin ravinnontarve ei enää ajoitu samaan aikaan saaliin runsaushuipun kanssa. Ajoituksen eriaikaisuus -hypoteesin mukaan todennäköisyys populaatioon rekrytoitumiselle riippuu synkronian asteesta saaliin kanssa. Ilmaston lämpenemisen vaikutuksissa lajeihin ja populaatioihin on kuitenkin vaihtelua. Ihmisen maankäyttö muuttaa ja tuhoaa lukuisien lajien elinympäristöjä. Esimerkiksi useiden boreaalisten metsien lintupopulaatioiden pienentymistä on selitetty intensiivisellä metsätaloudella. Lahopuun määrä metsissä on vähentynyt, mikä on uhka lahopuusta riippuvaisille lajeille. Korkealaatuisten habitaattien keskeisten piirteiden tunnistaminen on tärkeää luonnonsuojelun ja kestävän metsätalouden suunnittelulle. Koska yksilöiden oletetaan valitsevan niiden kelpoisuutta maksimoivia elinympäristöjä, pesäpaikanvalinta-analyysiä voidaan käyttää tärkeiden habitaattipiirteiden tunnistamiseen. Tarkastelen väitöskirjassani ilmastonmuutoksen ja habitaattien laadun vaikutuksia boreaalisiin populaatioihin. Mallilajeina käytän koloissa pesiviä varpuslintuja. Hyödyntämällä pitkäaikaisaineistoja osoitan, että lisääntymisen ajoittuminen on aikaistunut tali- ja hömötiaisella, mutta ei sinitiaisella. Myös ravintohuippu on aikaistunut, mikä on parantanut synkroniaa hömötiaisen ja sen pääasiallisen ravinnon eli toukkien välillä. Tali- ja sinitiaisella synkronia on pysynyt hyvänä. Hyvän synkronian myönteinen vaikutus lisääntymismenestykseen vaikuttaa kuitenkin ehdolliselta: se tulee esiin vain tietyissä olosuhteissa, kuten vuosina jolloin toukkia on runsaasti. Kevään lämpötilat näyttävät vaikuttavan pesinnän ajoittumiseen erityisesti proksimaattisena tekijänä. Pesäpaikkoina toimivien seisovien lahopuiden määrä on tärkein hömötiaisen pesäpaikanvalintaa määräävä tekijä. Kaukokartoitusaineisto yksinään ei riitä luotettavien mallien tuottamiseen, sillä ekologisesti tärkeät pienen skaalan tekijät voidaan kartoittaa vain suorin maastomittauksin. Metsien harventamatta jättäminen valituilla laikuilla turvaisi lahopuun jatkuvan saatavuuden, mikä vaikuttaisi myönteisesti talousmetsien biodiversiteettiin

Effects of forest management on the spatial distribution of the willow tit (Poecile montanus)

Abstract Modification, fragmentation and loss of boreal forest habitats have been intensive during the last century due to forestry practises and land use. This has been related to population declines of many forest species, yet the mechanisms affecting on the background are largely unknown. The willow tit, a primary cavity-nesting species that was once the 4th most common bird species in Finland is nowadays endangered. Earlier findings suggest that the willow tit population is affected by the reduction of nesting sites, decaying snags in forests and the loss of mature forests which contain the food storages during the winter. In this study we are searching for the mechanisms how the forest management methods could explain the decline of the willow tit population. We used long-term breeding data of the willow tit nesting sites from 1990 to 2020 collected in a study area in northern Finland to analyse if forest management affected nearest neighbour distances and natal dispersal and breeding dispersal distances. We used Geographic Information System (GIS) methods to combine the ecological breeding data to accurate spatial forest management and habitat quality data. The data was analysed with linear mixed models. We found that clear-cuttings affected the willow tit dispersal and neighbouring nest distances more than thinnings. Both clear-cuttings and thinnings increased the nearest neighbour distances. The natal and breeding dispersal distances were lengthened by increasing proportions of clear-cuttings. The habitat loss caused by clear-cuttings and the decrease in habitat quality caused by thinnings has had a major role in the decline of the willow tit population. The forest management actions were estimated to explain about 65 % of the willow tit breeding density decrease in the study area. The effects of forest management were witnessed in a cumulative 0–30-year period meaning that forest management causes long-term habitat degradation and loss. Availability of deciduous snags in the forests can compensate the habitat loss to some extent by providing better breeding opportunities. As the effects of clear-cutting were more severe to the willow tit than thinning, we recommend using other forest management methods than clear-cutting as the main management method