Mitochondrial DNA and temperature tolerance in lager yeasts

A growing body of research suggests that the mitochondrial genome (mtDNA) is important for temperature adaptation. In the yeast genus Saccharomyces, species have diverged in temperature tolerance, driving their use in high- or low-temperature fermentations. Here, we experimentally test the role of mtDNA in temperature tolerance in synthetic and industrial hybrids (Saccharomyces cerevisiae × Saccharomyces eubayanus or Saccharomyces pastorianus), which cold-brew lager beer. We find that the relative temperature tolerances of hybrids correspond to the parent donating mtDNA, allowing us to modulate lager strain temperature preferences. The strong influence of mitotype on the temperature tolerance of otherwise identical hybrid strains provides support for the mitochondrial climactic adaptation hypothesis in yeasts and demonstrates how mitotype has influenced the world’s most commonly fermented beverage.This work was supported by the USDA National Institute of Food and Agriculture (Hatch project no. 1003258), the NSF (grant no. DEB-1253634), and in part by the DOE Great Lakes Bioenergy Research Center (DOE BER Office of Science; nos. DE-SC0018409 and DE-FC02-07ER64494). E.P.B. was supported by a Louis and Elsa Thomsen Wisconsin Distinguished Graduate Fellowship. C.T.H. is a Pew Scholar in the Biomedical Sciences and a Vilas Faculty Early Career Investigator, supported by the Pew Charitable Trusts and the Vilas Trust Estate. D.P. is a Marie Sklodowska-Curie fellow of the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 747775). J.C.F. was supported by the NIH (no. GM080669)Peer Reviewe

Sorafenib resistance and JNK signaling in carcinoma during extracellular matrix stiffening

Tumor progression is coincident with mechanochemical changes in the extracellular matrix (ECM). We hypothesized that tumor stroma stiffening, alongside a shift in the ECM composition from a basement membrane-like microenvironment toward a dense network of collagen-rich fibers during tumorigenesis, confers resistance to otherwise powerful chemotherapeutics. To test this hypothesis, we created a high-throughput drug screening platform based on our poly(ethylene glycol)-phosphorylcholine (PEG-PC) hydrogel system, and customized it to capture the stiffness and integrin-binding profile of in vivo tumors. We report that the efficacy of a Raf kinase inhibitor, sorafenib, is reduced on stiff, collagen-rich microenvironments, independent of ROCK activity. Instead, sustained activation of JNK mediated this resistance, and combining a JNK inhibitor with sorafenib eliminated stiffness-mediated resistance in triple negative breast cancer cells. Surprisingly, neither ERK nor p38 appears to mediate sorafenib resistance, and instead, either ERK or p38 inhibition rescued sorafenib resistance during JNK inhibition, suggesting negative crosstalk between these signaling pathways on stiff, collagen-rich environments. Overall, we discovered that β1integrin and its downstream effector JNK mediate sorafenib resistance during tumor stiffening. These results also highlight the need for more advanced cell culture platforms, such as our high-throughput PEG-PC system, with which to screen chemotherapeutics

Manual of techniques for estimating bacterial growth rates, productivity and numbers in aquaculture ponds

Heterotrophic microorganisms, especially bacteria, play an important part in decomposition processes, nutrient cycling and food chains in aquatic systems. A number of different methods have been proposed for measuring microbial growth rates, but many are not specific for bacteria or do not include the whole population. It is evident that the ideal method should involve minimal handling of the bacterial population and be applied quickly so as not to alter natural or in situ growth rates or to be influenced by bacterial grazers. The use of radioactive nucleicacid precursors especially thymidine, to measure the rate of DNA synthesis has many of the prerequisites of the ideal method. As with all other techniques, there are disadvantages as well as advantages in using measurements of nucleicacid synthesi

HI ``Tails'' from Cometary Globules in IC1396

IC 1396 is a relatively nearby (750 pc), large (>2 deg), HII region ionized by a single O6.5V star and containing bright-rimmed cometary globules. We have made the first arcmin resolution images of atomic hydrogen toward IC 1396, and have found remarkable ``tail''-like structures associated with some of the globules and extending up to 6.5 pc radially away from the central ionizing star. These HI ``tails'' may be material which has been ablated from the globule through ionization and/or photodissociation and then accelerated away from the globule by the stellar wind, but which has since drifted into the ``shadow'' of the globules. This report presents the first results of the Galactic Plane Survey Project recently begun by the Dominion Radio Astrophysical Observatory.Comment: 11 pages, 5 postscript figures, uses aaspp4.sty macros, submitted in uuencoded gzipped tar format, accepted for publication in Astrophysical Journal Letters, colour figures available at http://www.drao.nrc.ca/~schieven/news_sep95/ic1396.htm

Kinematics and the origin of the internal structures in HL Tau jet (HH 151)

Knotty structures of Herbig-Haro jets are common phenomena, and knowing the origin of these structures is essential for understanding the processes of jet formation. Basically, there are two theoretical approaches: different types of instabilities in stationary flow, and velocity variations in the flow. We investigate the structures with different radial velocities in the knots of the HL Tau jet as well as its unusual behaviour starting from 20 arcsec from the source. Collation of radial velocity data with proper motion measurements of emission structures in the jet of HL Tau makes it possible to understand the origin of these structures and decide on the mechanism for the formation of the knotty structures in Herbig-Haro flows. We present observations obtained with a 6 m telescope (Russia) using the SCORPIO camera with scanning Fabry-Perot interferometer. Two epochs of the observations of the HL/XZ Tau region in Halpha emission (2001 and 2007) allowed us to measure proper motions for high and low radial velocity structures. The structures with low and high radial velocities in the HL Tau jet show the same proper motion. The point where the HL Tau jet bents to the north (it coincides with the trailing edge of so-called knot A) is stationary, i.e. does not have any perceptible proper motion and is visible in Halpha emission only. We conclude that the high- and low- velocity structures in the HL Tau jet represent bow-shocks and Mach disks in the internal working surfaces of episodic outflows. The bend of the jet and the brightness increase starting some distance from the source coincides with the observed stationary deflecting shock. The increase of relative surface brightness of bow-shocks could be the result of the abrupt change of the physical conditions of the ambient medium as well as the interaction of a highly collimated flow and the side wind from XZ Tau.Comment: To be published in Astronomy and Astrophysic

Observations of H3+ in the Diffuse Interstellar Medium

Surprisingly large column densities of H3+ have been detected using infrared absorption spectroscopy in seven diffuse cloud sightlines (Cygnus OB2 12, Cygnus OB2 5, HD 183143, HD 20041, WR 104, WR 118, and WR 121), demonstrating that H3+ is ubiquitous in the diffuse interstellar medium. Using the standard model of diffuse cloud chemistry, our H3+ column densities imply unreasonably long path lengths (~1 kpc) and low densities (~3 cm^-3). Complimentary millimeter-wave, infrared, and visible observations of related species suggest that the chemical model is incorrect and that the number density of H3+ must be increased by one to two orders of magnitude. Possible solutions include a reduced electron fraction, an enhanced rate of H2 ionization, and/or a smaller value of the H3+ dissociative recombination rate constant than implied by laboratory experiments.Comment: To be published in Astrophysical Journal, March 200

The equation of state of solid nickel aluminide

The pressure-volume-temperature equation of state of the intermetallic compound NiAl was calculated theoretically, and compared with experimental measurements. Electron ground states were calculated for NiAl in the CsCl structure, using density functional theory, and were used to predict the cold compression curve and the density of phonon states. The Rose form of compression curve was found to reproduce the ab initio calculations well in compression but exhibited significant deviations in expansion. A thermodynamically-complete equation of state was constructed for NiAl. Shock waves were induced in crystals of NiAl by the impact of laser-launched Cu flyers and by launching NiAl flyers into transparent windows of known properties. The TRIDENT laser was used to accelerate the flyers to speeds between 100 and 600m/s. Point and line-imaging laser Doppler velocimetry was used to measure the acceleration of the flyer and the surface velocity history of the target. The velocity histories were used to deduce the stress state, and hence states on the principal Hugoniot and the flow stress. Flyers and targets were recovered from most experiments. The effect of elasticity and plastic flow in the sample and window was assessed. The ambient isotherm reproduced static compression data very well, and the predicted Hugoniot was consistent with shock compression data