Molecular diagnosis of Eimeria species affecting naturally infected Gallus gallus.

Abstract - We used PCR to test various protocols and define a technique for DNA extraction directly from chicken-shed stool samples for the identification of Eimeria species that parasitize birds. It was possible to extract and amplify DNA of seven Eimeria species from field stool samples, using both protocols tested; extractions made with phenol/chloroform protocols gave the best results. The primers were specific and sensitive, allowing amplification of samples containing as few as 20 oocysts, both in individual and in a multiplex PCR. Individualized PCR with the phenol/chloroform DNA extraction protocol detected a larger number of Eimeria species. Molecular diagnosis was found to be practical and precise, and can be used for monitoring and epidemiological studies of Eimeria

HYPROP measurements of the unsaturated hydraulic properties of a carbonate rock sample.

The unsaturated hydraulic properties provide important theoretical and practical information about fluid flow in soils and rocks for a range of soil, environmental and engineering applications. In this study we used the evaporation (HYPROP) and chilled-mirror dew point (WP4C) methods to estimate the water retention and unsaturated hydraulic conductivity curves of an Indiana Limestone carbonate rock sample. The obtained data were analyzed in terms of unimodal and bimodal VG (van Genuchten, 1980) and PDI (Peters et al., 2015) type functions. Bimodal functions were found to produce excellent descriptions for the unsaturated hydraulic data we measured, slightly better than the standard unimodal formulations. For our particular test using an Indiana Limestone rock sample, we did not find much improvement when accounting for film and corner flow using the PDI formulation, relative to the VG model. As far as we know, this is the first time the HYPROP methodology was applied to a rock sample

Biochars in soils : towards the required level of scientific understanding

Key priorities in biochar research for future guidance of sustainable policy development have been identified by expert assessment within the COST Action TD1107. The current level of scientific understanding (LOSU) regarding the consequences of biochar application to soil were explored. Five broad thematic areas of biochar research were addressed: soil biodiversity and ecotoxicology, soil organic matter and greenhouse gas (GHG) emissions, soil physical properties, nutrient cycles and crop production, and soil remediation. The highest future research priorities regarding biochar's effects in soils were: functional redundancy within soil microbial communities, bioavailability of biochar's contaminants to soil biota, soil organic matter stability, GHG emissions, soil formation, soil hydrology, nutrient cycling due to microbial priming as well as altered rhizosphere ecology, and soil pH buffering capacity. Methodological and other constraints to achieve the required LOSU are discussed and options for efficient progress of biochar research and sustainable application to soil are presented.Peer reviewe

Systematic review of soil ecosystem services in tropical regions

Soil ecosystem service (SES) approaches evidence the importance of soil for human well-being, contribute to improving dialogue between science and decision-making and encourage the translation of scientific results into public policies. Herein, through systematic review, we assess the state of the art of SES approaches in tropical regions. Through this review, 41 publications were identified; while most of these studies considered SES, a lack of a consistent framework to define SES was apparent. Most studies measured soil natural capital and processes, while only three studies undertook monetary valuation. Although the number of publications increased (from 1 to 41), between 2001 and 2019, the total number of publications for tropical regions is still small. Countries with the largest number of publications were Brazil (n = 8), Colombia (n = 6) and Mexico (n = 4). This observation emphasizes an important knowledge gap pertaining to SES approaches and their link to tropical regions. With global momentum behind SES approaches, there is an opportunity to integrate SES approaches into policy and practice in tropical regions. The use of SES evaluation tools in tropical regions could transform how land use decisions are informed, mitigating soil degradation and protecting the ecosystems that soil underpins

Micronutrient availability in amazonian dark earths and adjacent soils

Amazonian Dark Earths (ADEs) are highly fertile soils in areas with predominance of unfertile soils. However, the variation in nutrient availability between regions and the resilience of ADEs to modern agricultural use is still little known, particularly regarding micronutrient contents. Hence, the present study synthesized current information of ADE impacts on extractable micronutrient (Cu, Ni, Fe, Mn, Zn, B) contents at different soil depths and assessed in detail the role of both soil depth and land-use type on extractable Cu, Ni, Fe, Mn and Zn in nine ADEs and adjacent (ADJ) soils from different Amazonian regions. The land-use systems chosen were secondary old (OF) or young (YF) forests, and agricultural systems (AS) in Iranduba, Belterra and Porto Velho. Only eight studies compared extractable (Mehlich-1) micronutrient contents at 21 sites with ADEs and ADJ soils, but only four studies included depths greater than 30 cm, and B and Ni were evaluated in only one study. Higher Mn and Zn, but lower Fe contents were found in ADEs both from literature data and in the present study, especially in the first 30 cm depth. Increases in extractable Ni and Cu in ADEs varied according to the site and the land use considered. Micronutrient contents tended to decrease with depth, but varied depending on the element, site, soil type and land use. Sites with modern agriculture showed few differences in extractable micronutrient contents, except for a decrease in Fe in Belterra and Mn in Porto Velho. Considering the high amounts of some micro- and macronutrients in ADEs further work is warranted concerning soil management and nutrient balance in plants grown on these soils

A“Dirty” Footprint: Macroinvertebrate diversity in Amazonian Anthropic Soils

International audienceAmazonian rainforests, once thought to be pristine wilderness, are increasingly known to have been widely inhabited, modified, and managed prior to European arrival, by human populations with diverse cultural backgrounds. Amazonian Dark Earths (ADEs) are fertile soils found throughout the Amazon Basin, created by pre-Columbian societies with sedentary habits. Much is known about the chemistry of these soils, yet their zoology has been neglected. Hence, we characterized soil fertility, macroinvertebrate communities, and their activity at nine archeological sites in three Amazonian regions in ADEs and adjacent reference soils under native forest (young and old) and agricultural systems. We found 673 morphospecies and, despite similar richness in ADEs (385 spp.) and reference soils (399 spp.), we identified a tenacious pre-Columbian footprint, with 49% of morphospecies found exclusively in ADEs. Termite and total macroinvertebrate abundance were higher in reference soils, while soil fertility and macroinvertebrate activity were higher in the ADEs, and associated with larger earthworm quantities and biomass. We show that ADE habitats have a unique pool of species, but that modern land use of ADEs decreases their populations, diversity, and contributions to soil functioning. These findings support the idea that humans created and sustained high-fertility ecosystems that persist today, altering biodiversity patterns in Amazonia

Evidence confirms an anthropic origin of Amazonian Dark Earths.

Arising from: Silva et al. Nature Communications https://doi.org/10.1038/s41467-020-20184-2 (2021