111 research outputs found

    Unveiling evolutionary algorithm representation with DU maps

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    Evolutionary algorithms (EAs) have proven to be effective in tackling problems in many different domains. However, users are often required to spend a significant amount of effort in fine-tuning the EA parameters in order to make the algorithm work. In principle, visualization tools may be of great help in this laborious task, but current visualization tools are either EA-specific, and hence hardly available to all users, or too general to convey detailed information. In this work, we study the Diversity and Usage map (DU map), a compact visualization for analyzing a key component of every EA, the representation of solutions. In a single heat map, the DU map visualizes for entire runs how diverse the genotype is across the population and to which degree each gene in the genotype contributes to the solution. We demonstrate the generality of the DU map concept by applying it to six EAs that use different representations (bit and integer strings, trees, ensembles of trees, and neural networks). We present the results of an online user study about the usability of the DU map which confirm the suitability of the proposed tool and provide important insights on our design choices. By providing a visualization tool that can be easily tailored by specifying the diversity (D) and usage (U) functions, the DU map aims at being a powerful analysis tool for EAs practitioners, making EAs more transparent and hence lowering the barrier for their use

    Relict basin closure and crustal shortening budgets during continental collision: An example from Caucasus sediment provenance

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    Comparison of plate convergence with the timing and magnitude of upper crustal shortening in collisional orogens indicates both shortening deficits (200–1700 km) and significant (10–40%) plate deceleration during collision, the cause(s) for which remains debated. The Greater Caucasus Mountains, which result from postcollisional Cenozoic closure of a relict Mesozoic back‐arc basin on the northern margin of the Arabia‐Eurasia collision zone, help reconcile these debates. Here we use U‐Pb detrital zircon provenance data and the regional geology of the Caucasus to investigate the width of the now‐consumed Mesozoic back‐arc basin and its closure history. The provenance data record distinct southern and northern provenance domains that persisted until at least the Miocene. Maximum basin width was likely ~350–400 km. We propose that closure of the back‐arc basin initiated at ~35 Ma, coincident with initial (soft) Arabia‐Eurasia collision along the Bitlis‐Zagros suture, eventually leading to ~5 Ma (hard) collision between the Lesser Caucasus arc and the Scythian platform to form the Greater Caucasus Mountains. Final basin closure triggered deceleration of plate convergence and tectonic reorganization throughout the collision. Postcollisional subduction of such small (102–103 km wide) relict ocean basins can account for both shortening deficits and delays in plate deceleration by accommodating convergence via subduction/underthrusting, although such shortening is easily missed if it occurs along structures hidden within flysch/slate belts. Relict basin closure is likely typical in continental collisions in which the colliding margins are either irregularly shaped or rimmed by extensive back‐arc basins and fringing arcs, such as those in the modern South Pacific.Key PointsU‐Pb provenance indicates Greater Caucasus formed by postcollisional Cenozoic closure of a Mesozoic back arc basin likely ~350–400 km widePostcollisional subduction/underthrusting of such relict basins helps account for shortening deficits and delayed plate decelerationPlate convergence should not be expected to balance upper crustal shortening or the length of subducted slab following collisionPeer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/135981/1/tect20504.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/135981/2/tect20504_am.pd

    Theoretical study of optical properties of anti phase domains in GaP

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    International audienceIII-V/Si heterostructures are currently investigated for silicon photonics and solar energy conversion. In particular, dilute nitride alloy GaAsPN grown on a GaP/Si platform exhibits lattice match with Si and an optimal band gap configuration for tandem solar cell devices. However, monolithic "coherent" growth of the GaP thin layer on Si suffers from the nucleation of extended structural defects, which can hamper device operation as well as the GaP/Si interface level and through their propagation inside the overall heterostructure. However, the effect of such structural defects on optical and transport properties is actually not well understood in details. In this letter, we investigate the anti phase domains defect (also called inversion domains) by means of ab initio calculations giving insights into the alteration of optical and transport properties of GaP due to the defective GaP/Si interface

    Chandra and XMM Observations of the Composite Supernova Remnant G327.1-1.1

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    We present new X-ray imaging and spectroscopy of a composite supernova remnant G327.1-1.1 using the Chandra and XMM-Newton X-ray observatories. G327.1-1.1 has an unusual morphology consisting of a symmetric radio shell and an off center nonthermal component that indicates the presence of a pulsar wind nebula (PWN). Radio observations show a narrow finger of emission extending from the PWN structure towards the northwest. X-ray studies with ASCA, ROSAT, and BeppoSAX revealed elongated extended emission and a compact source at the tip of the finger that may be coincident with the actual pulsar. The high resolution Chandra observations provide new insight into the structure of the inner region of the remnant. The images show a compact source embedded in a cometary structure, from which a trail of X-ray emission extends in the southeast direction. The Chandra images also reveal two prong-like structures that appear to originate from the vicinity of the compact source and extend into a large bubble that is oriented in the north-west direction, opposite from the bright radio PWN. The emission from the entire radio shell is detected in the XMM data and can be characterized by a thermal plasma model with a temperature of 0.3 keV, which we use to estimate the physical properties of the remnant. The peculiar morphology of G327.1-1.1 may be explained by the emission from a moving pulsar and a relic PWN that has been disrupted by the reverse shock.Comment: 12 pages, 10 figures, 4 table

    Oxidation of Monolignols by Members of the Berberine Bridge Enzyme Family Suggests a Role in Plant Cell Wall Metabolism

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    Plant genomes contain a large number of genes encoding for berberine bridge enzyme (BBE)-like enzymes. Despite the widespread occurrence and abundance of this protein family in the plant kingdom, the biochemical function remains largely unexplored. In this study, we have expressed two members of the BBE-like enzyme family from Arabidopsis thaliana in the host organism Komagataella pastoris. The two proteins, termed AtBBE-like 13 and AtBBE-like 15, were purified, and their catalytic properties were determined. In addition, AtBBE-like 15 was crystallized and structurally characterized by x-ray crystallography. Here, we show that the enzymes catalyze the oxidation of aromatic allylic alcohols, such as coumaryl, sinapyl, and coniferyl alcohol, to the corresponding aldehydes and that AtBBE-like 15 adopts the same fold as vanillyl alcohol oxidase as reported previously for berberine bridge enzyme and other FAD-dependent oxidoreductases. Further analysis of the substrate range identified coniferin, the glycosylated storage form of coniferyl alcohol, as a substrate of the enzymes, whereas other glycosylated monolignols were rather poor substrates. A detailed analysis of the motifs present in the active sites of the BBE-like enzymes in A. thaliana suggested that 14 out of 28 members of the family might catalyze similar reactions. Based on these findings, we propose a novel role of BBE-like enzymes in monolignol metabolism that was previously not recognized for this enzyme family

    Design of a lattice-matched III-V-N/Si photovoltaic tandem cell monolithically integrated on silicon substrate

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    International audienceIn this paper, we present a comprehensive study of high efficiencies tandem solar cells monolithically grown on a silicon substrate using GaAsPN absorber layer. InGaAs(N) quantum dots and GaAsPN quantum wells have been grown recently on GaP/Si susbstrate for applications related to light emission. For photovoltaic applications, we consider the GaAsPN diluted nitride alloy as the top junction material due to both its perfect lattice matching with Si and ideal bandgap energy for current generation in association with the Si bottom cell. Numerical simulation of the top cell is performed. The effect of layer thicknesses and doping on the cell efficiency are evidenced. In these structures a tunnel junction (TJ) is needed to interconnect both the top and bottom sub-cells. We compare the simulated performances of different TJ structures and show that the GaP(n+)/Si(p+) TJ is promising to improve performances of the current-voltage characteristic

    Job Strain as a Risk Factor for Peripheral Artery Disease : A Multi-Cohort Study

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    Background Job strain is implicated in many atherosclerotic diseases, but its role in peripheral artery disease (PAD) is unclear. We investigated the association of job strain with hospital records of PAD, using individual-level data from 11 prospective cohort studies from Finland, Sweden, Denmark, and the United Kingdom. Methods and Results Job strain (high demands and low control at work) was self-reported at baseline (1985-2008). PAD records were ascertained from national hospitalization data. We used Cox regression to examine the associations of job strain with PAD in each study, and combined the study-specific estimates in random effects meta-analyses. We used tau(2), I-2, and subgroup analyses to examine heterogeneity. Of the 139 132 participants with no previous hospitalization with PAD, 32 489 (23.4%) reported job strain at baseline. During 1 718 132 person-years at risk (mean follow-up 12.8 years), 667 individuals had a hospital record of PAD (3.88 per 10 000 person-years). Job strain was associated with a 1.41-fold (95% CI, 1.11-1.80) increased average risk of hospitalization with PAD. The study-specific estimates were moderately heterogeneous (tau(2)=0.0427, I-2: 26.9%). Despite variation in their magnitude, the estimates were consistent in both sexes, across the socioeconomic hierarchy and by baseline smoking status. Additional adjustment for baseline diabetes mellitus did not change the direction or magnitude of the observed associations. Conclusions Job strain was associated with small but consistent increase in the risk of hospitalization with PAD, with the relative risks on par with those for coronary heart disease and ischemic stroke.Peer reviewe
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